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Curing Cancer with Alfresco and the
American Society for Clinical
Pathologists
Ron Swan
CTO
Ray Wijangco
Alfresco Practice Manager
Agenda
• About ASCP
• Solution Overview
• Roadmap
• Architecture Overview
What is Pathology?
• pa·thol·o·gy
noun: the study of diseases and of the
changes that they cause
: changes in a person, an animal, or a plant
that are caused by disease
• 18,000 Practicing Pathologists in US
• Average age is 50 years and increasing
• Representing 70-80% of the world’s total
• Roughly 70-80% of disease diagnosis comes
from a laboratory
Problems facing Pathology
• Medical errors
• Missed 1st opinions
• Misclassification of diagnoses
• Wait times for diagnosis are increasing in some cases
• Market Forces
• Greater access to healthcare
• Decreasing number of laboratory healthcare providers
Solution Overview
ASCP Alfresco Applications
Asset Warehouse
Alfresco Share
Vault Web
Indexing Interface
ASCPedia
Consumer Search
Managed by Asset
Administrator to start
workflows / upload
assets
Experts index content by
discipline, including
workflow review by
peers and admin.
Consumer search
interface to access
images
Our history with Alfresco
• 2008 - Initial development of Asset Library using
Alfresco Community
• 2012 - Rewrite of the Asset Library using
Alfresco Enterprise
• 2014 – Development of ASCPedia
Asset Warehouse
• Librarian / Admin Tool
• OOTB Alfresco Share
• Manage
Contributions
• Prepare / Organize
Unindexed Assets
• Apply / Admin
Metadata
• Start Indexing
Workflows
Vault Web
• Asset Indexing Tool
• Bulk Indexing
• Annotations
• Pathology Terms / Tagging
• Workflow
• Peer Review Process
• Final Admin Approval
• Based on Expertise
ASCPedia
Challenges of working in a lab
• Workflow issues
• Glass slides break or are lost
• Comparisons to previous
patient specimens are
challenging
• Hoarding of reference slides
• Remote Diagnosis
• Slides often need to be
shipped to an expert
• Lack of real time collaboration
Opportunities in Pathology
• Pathology is becoming digital
• Full Slide Scans ~3gb an image
• Crowdsourcing & sharing have become
mainstream
• Virtual Training
• Shared Viewing
• Image Annotations
• Machine Learning
• Image comparison
• Clinical Decision Support
Interesting Features
Crowdsourcing
Annotations
Curated Collections
Google Glass
Integration Prototype
Roadmap
Image Analysis
•Cross referencing images
• Pathology to Radiology
• Time lapse
• To known abnormalities
Image Recognition
Applying facial recognition software to your
biopsy
"Clinical Decision Support systems link health observations
with health knowledge to influence health choices by
clinicians for improved health care” - Robert Hayward of the
Centre for Health Evidence
Other possibilities
• Case management tool
• Provide medical knowledge and diagnosis to
countries in need.
• Collaborative Viewing
• Allow experienced Pathologists to virtually
train others
Architecture Overview
MS SQL Server
Alfresco Server
NAS
External Solr
Asset Warehouse
Vault Web
ASCPedia
Annotation Server
(OpenSlide)
PathTerms
Amazon Web Services – S3
ASCPedia User
High Level Architecture
Vault Web Architecture
• Custom Java Spring MVC
• Activiti / Workflow Driven
• TSG OpenAnnotate for Asset Annotations
• Integration with PathTerms for Medical
Keywords
• Authentication with ASCP’s CRM
ASCPedia Architecture
• Single Page App / Backbone.js
• External Solr for Search / Metadata
• Published metadata from Alfresco Repository
• Access content via Alfresco WebScripts
• Integration with CRM
Demo
Question & Answers
Thank You!

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Curing Cancer with Alfresco and Digital Pathology

  • 1. Curing Cancer with Alfresco and the American Society for Clinical Pathologists Ron Swan CTO Ray Wijangco Alfresco Practice Manager
  • 2. Agenda • About ASCP • Solution Overview • Roadmap • Architecture Overview
  • 3. What is Pathology? • pa·thol·o·gy noun: the study of diseases and of the changes that they cause : changes in a person, an animal, or a plant that are caused by disease • 18,000 Practicing Pathologists in US • Average age is 50 years and increasing • Representing 70-80% of the world’s total • Roughly 70-80% of disease diagnosis comes from a laboratory
  • 4. Problems facing Pathology • Medical errors • Missed 1st opinions • Misclassification of diagnoses • Wait times for diagnosis are increasing in some cases • Market Forces • Greater access to healthcare • Decreasing number of laboratory healthcare providers
  • 6. ASCP Alfresco Applications Asset Warehouse Alfresco Share Vault Web Indexing Interface ASCPedia Consumer Search Managed by Asset Administrator to start workflows / upload assets Experts index content by discipline, including workflow review by peers and admin. Consumer search interface to access images
  • 7. Our history with Alfresco • 2008 - Initial development of Asset Library using Alfresco Community • 2012 - Rewrite of the Asset Library using Alfresco Enterprise • 2014 – Development of ASCPedia
  • 8. Asset Warehouse • Librarian / Admin Tool • OOTB Alfresco Share • Manage Contributions • Prepare / Organize Unindexed Assets • Apply / Admin Metadata • Start Indexing Workflows
  • 9. Vault Web • Asset Indexing Tool • Bulk Indexing • Annotations • Pathology Terms / Tagging • Workflow • Peer Review Process • Final Admin Approval • Based on Expertise
  • 11. Challenges of working in a lab • Workflow issues • Glass slides break or are lost • Comparisons to previous patient specimens are challenging • Hoarding of reference slides • Remote Diagnosis • Slides often need to be shipped to an expert • Lack of real time collaboration
  • 12. Opportunities in Pathology • Pathology is becoming digital • Full Slide Scans ~3gb an image • Crowdsourcing & sharing have become mainstream • Virtual Training • Shared Viewing • Image Annotations • Machine Learning • Image comparison • Clinical Decision Support
  • 19. Image Analysis •Cross referencing images • Pathology to Radiology • Time lapse • To known abnormalities
  • 20. Image Recognition Applying facial recognition software to your biopsy
  • 21. "Clinical Decision Support systems link health observations with health knowledge to influence health choices by clinicians for improved health care” - Robert Hayward of the Centre for Health Evidence
  • 22. Other possibilities • Case management tool • Provide medical knowledge and diagnosis to countries in need. • Collaborative Viewing • Allow experienced Pathologists to virtually train others
  • 24. MS SQL Server Alfresco Server NAS External Solr Asset Warehouse Vault Web ASCPedia Annotation Server (OpenSlide) PathTerms Amazon Web Services – S3 ASCPedia User High Level Architecture
  • 25. Vault Web Architecture • Custom Java Spring MVC • Activiti / Workflow Driven • TSG OpenAnnotate for Asset Annotations • Integration with PathTerms for Medical Keywords • Authentication with ASCP’s CRM
  • 26. ASCPedia Architecture • Single Page App / Backbone.js • External Solr for Search / Metadata • Published metadata from Alfresco Repository • Access content via Alfresco WebScripts • Integration with CRM
  • 27. Demo