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Core Biology
     Robert Lütjens, Ph.D
Addex Pharmaceuticals R&D Day
       May 11, 2010




                                1
Addex Tools for AM Discovery

 Addex has developed new proprietary tools,
  measuring molecular changes at the receptor level
  following its activation by the binding of its ligand

 Those tools were conceived to assess the real
  kinetic changes associated with receptor allosteric
  modulation and, by doing so, remove off-target
  contribution in assay readout


                                                          2
Novel tools for HTS of allosteric modulators:
    Assays developed for Non-GPCRs




                                           3
Non-GPCR AM Discovery

 Current available biological tool arsenal is even poorer than for
GPCRs, and has not been developed with allosteric modulators in
mind

 The most receptor-proximal measurements rely upon events
happening downstream in cascades, sometimes hours after
receptor activation. Readouts are carried out at integration nodes
in canonical pathways, common to numerous signalling cascades
triggered by various ligands


                                                                 4
Signaling pathways of cytokine receptors
      DR3         TNFR1                         IL1R1         TLR




                 RIP1
                 RIP1

      TRADD        TRADD
                 TRAF5 TRAF2
                 TRAF5 TRAF2




      Caspases
      Caspases                           TAK1
                                         TAK1
                                                                       Measured
                                                                       responses
                                                        p38
                                                        p38
                                  IKK
                                   IKK          JNK
                                                JNK
       Death
      pathway
                           NFB
                           NFB


                  NFB                            Stress
                 pathway                         pathway            Cytokine
                                                                    production


      At Addex, we have developed unique assay systems to better
                                                                                   5
      measure allosteric modulation of receptors of interest
ADX Tags Series 2 for non GPCRs
Assay characteristics
                  Type-1 transmembrane
                         receptor




                                   Ligand –induced
                                      activation




                                                           !l
                         Tagged




                                                         na
                                                     si g
                        receptor




    Addex proprietary dynamic & receptor proximal assay performed with live cells
    Monitors conformational and/or multimerization alterations
    Tag positioning may or may not require truncation of receptors
    HTS & Medchem 384-w plates compatible

                                                                                     6
ADX Tags Series 2 for non GPCRs
    Example with TNFR1 NAM Project


Project objective:

Identify orally available, safe, selective, centrally and peripherally
active small molecule antagonist (Negative Allosteric Modulators)
targeting TNFR1 for the treatment of peripheral and central
inflammatory conditions, as well as neurodegenerative diseases




                                                                         7
ADX Tags Series 2 for TNFR1
                                Assay performance

                         Performance                                                   Selectivity                                                Inhibition
                                                                                                                                       300
                                                                         350

                 250                                                                TNF                                                250
                                                                         300
                                                                                                                                                                    A nti-T N FR 1 m A b




                                                                                                                      Relative units
                                                                                   TL1A




                                                        Relative units
                 200                                                     250                                                           200                          E nbrel
                                                                                   IL1-
Relative units




                                                                         200
                 150                                                                                                                   150
                                                                         150
                 100                                                                                                                   100
                                                                         100
                 50                                                                                                                     50
                                                                          50

                  0                                                        0                                                             0
                   -11    -10     -9          -8   -7                      -12   -11    -10   -9   -8       -7   -6                          -7        -6          -5           -4
                            Log [TNF], g/ml                                        Log [com pound], g/m L                                         Lo g [co m po und], g/m l




          Window signal/noise >25x, Z’ (EC80) > 0.6
          Assay is TNFR1 selective
          HTS successfully performed
          Hit rate was 0.6% at > 50% inhibition

                                                                                                                                                                                     8
ADX Tags Series 2 for TNFR1
                              Time-resolved output allows identification of
                              receptor specific signatures
                           250000          T
                                                                    TNFR1
Tag output Intensity (I)




                           200000

                                                                                                                        Signature profiles



                                                           TN
                           150000




                                                            F
                                                                                                           3.010 7
                           100000                                                                                                             TNFR1




                                                                                Tag output Intensity (I)
                                                                                                                                              DR3
                           50000
                                                                                                           2.010 7
                               0
                                    0     100 200 300 400 500 600 700 800
                                        Time following TNF addition (Second)                               1.010 7
                           250000
                                                                      DR3
Tag output Intensity (I)




                           200000
                                                                                                                  0
                                                                                                                  100      200     300     400    500     600
                           150000
                                          T                                                                                         T (s)
                                                         TL




                           100000
                                                           1A




                                                                                                                      I : Tag output (AUC)
                            50000                                                                                     T : Time interval from agonist addition
                                                                                                                      to response peak
                               0
                                    0     100 200 300 400 500 600 700 800
                                        Time following TL1A addition (Second)

                                                                                                                                                                 9
ADX Tags Series 2 for TNFR1
                             Compounds affect receptor signature differently

                                                     ADX61410                                                                ADX29342
                           3.010 7                                                                       3.010 7
                                                     TNF + DR ADX61410                                                       TNF + DR ADX29342
                                                     DR TNF
Tag output Intensity (I)




                                                                               Tag output Intensity (I)
                                                     TNF + DR anti-TNFR1 mAb                                                 DR TNF
                           2.010 7                                                                       2.010 7



                           1.010 7                                                                       1.010 7



                                  0                                                                              0
                                  250   300   350    400     450   500   550                                     250   300   350    400     450   500   550
                                                    T (s)                                                                         T (s)



                                  Both compounds inhibit TNF-induced tag2 TNFR1 activation, but ADX61410
                                  does so without altering global TNFR1 signature profile, whereas ADX29342
                                  strongly changes it



                                                                                                                                                              10
ADX Tags Series 2 for TNFR1
                                       Representative Compounds behave as non-
                                       competitive antagonists (NAMs) of TNFR1
              4.010 7      no compound       ADX60357-2                                                               5.010 7      no compound    ADX29342-1
                            1.87 uM                                                                                                  1.87 uM
                            3.75 uM                                                                                                  3.75 uM
                            7.5 uM                                                                                     4.010 7      7.5 uM
              3.010 7      15 uM                                                                                                    15 uM
                            30 uM                                                                                                    30 uM
                            no compound                                                                                              no compound




                                                                                                          RLU (AUC)
                                                                                                                       3.010 7
RLU (AUC)




              2.010 7

                                                                                                                       2.010 7
                                                                                             EC50                                                                                    EC50
                                                                               no compound   1.212e-009                                                               no compound    9.548e-010
                                                                               1.87 uM       1.346e-009                                                               1.87 uM        8.337e-010
              1.010 7
                                                                               3.75 uM       9.482e-010                                                               3.75 uM        7.267e-010
                                                                               7.5 uM        9.928e-010
                                                                                                                       1.010 7
                                                                                                                                                                      7.5 uM         7.395e-010
                                                                               15 uM         7.246e-010                                                               15 uM          7.406e-010
                                                                               30 uM         3.753e-010                                                               30 uM          5.977e-010
                                                                               no compound   8.853e-010                                                               no compound    8.521e-010
                     0                                                                                                        0
                      -11        -10         -9             -8           -7                                                    -11         -10        -9             -8             -7
                                          Log [TNF], g/ml                                                                                          Log [TNF], g/ml




              5.010 7      no compound      ADX52945-1                                                                5.010 7      no compound   ADX85142-1
                            1.87 uM                                                                                                  1.87 uM
                            3.75 uM                                                                                                  3.75 uM
              4.010 7      7.5 uM                                                                                     4.010 7      7.5 uM
                            15 uM                                                                                                    15 uM
                            30 uM                                                                                                    30 uM
                            no compound                                                                                              no compound
  RLU (AUC)




              3.010 7


                                                                                                           RLU (AUC)
                                                                                                                       3.010 7



              2.010 7                                                                                                 2.010 7
                                                                               EC50                                                                                           EC50
                                                                 no compound   8.259e-010
                                                                                                                                                                no compound   6.951e-010
                                                                 1.87 uM       8.103e-010
                                                                                                                                                                1.87 uM       5.447e-010
                                                                 3.75 uM       7.300e-010
              1.010 7                                                                                                                                          3.75 uM       5.214e-010
                                                                 7.5 uM        8.333e-010                              1.010 7
                                                                                                                                                                7.5 uM        4.240e-010
                                                                 15 uM         8.878e-010
                                                                                                                                                                15 uM         3.683e-010
                                                                 30 uM         7.596e-010
                                                                 no compound   8.883e-010
                                                                                                                                                                30 uM         3.682e-010
                     0                                                                                                                                          no compound   6.328e-010
                      -11          -10            -9             -8             -7                                            0
                                             Log [TNF], g/ml                                                                   -11         -10        -9             -8             -7
                                                                                                                                                   Log [TNF], g/ml
ADX Tags Series 2 for TNFR1
Identification of compounds with PAM or NAM
effects

                                                                 R1                                                                               R2

                                A         Linker 1           B                                                  A         Linker 2            B

                                        ADX29342                                                                        ADX10612
                       120                                                                             80




                                                                           % enhancement over buffer
                       100
% max response (AUC)




                                                                                                       60




                                                                                  Tag Output
                        80
    Tag Output




                        60                                                                             40

                        40
                                                                                                       20
                        20     ADXtag2-IL1R at IL1- EC80                                                     ADXtag2-IL1R at IL1- EC20
                               ADXtag2-TNFR1 at TNF EC80                                                      ADXtag2-TNFR1 at TNF EC20
                         0                                                                              0
                          -7              -6            -5            -4                                 -7              -6             -5             -4
                                        Log [ADX29342], (M)                                                             Log [ADX10612], (M)




                                    Existence of a functional switch from negative to
                                    positive TNFR1 modulation in identified series
                                                                                                                                                            12
ADX Tags Series 2
                                           Applicable to variety of receptor targets

           Assays developed for various receptor families :

                             ADX Tags Series 2 for DR3                                       ADX Tags Series 2 for BMP-2R                                     ADX Tags Series 2 for TrkB
                                                                                                                                                         125000000
                 6000000
                                                                                         400000
                                                                                                                                                         100000000




                                                                                                                                        Relative Units
Relative units




                                                                        Relative Units
                                                                                         300000                                                          75000000
                 4000000

                                                                                                                                                         50000000
                                                                                         200000

                 2000000                                                                                                                                 25000000
                                                                                         100000
                                                                                                                                                                0
                                                                                                                                                                 -10    -9     -8       -7     -6        -5
                      0                                                                      0                                                                         Log [compound], g/ml or M
                       -10     -9    -8      -7       -6      -5   -4                         -11   -10     -9    -8    -7    -6   -5
                                    Log [compound], g/mL                                                  Log [BMP-2], g/ml                                             BDNF, EC50 = 25ng/ml

                                    TL1A, EC50 = 25 ng/ml                                                                                                               K252a on EC80 of BDNF, IC50 = 70 nM
                                                                                                          BMP-2, EC50 = 86 ng/ml
                                    DCR3, IC50 = 4.22 g/ml                                                                                                             EC80 100ng/ml



    Window signal/noise >50x                                                        Window signal/noise >15x                                        Window signal/noise >10x
                                                                                                                                                    Z’ (EC20) > 0.4
                                                                                                                                                    Preparation for HTS ongoing


                                                                                                                                                                                                    13
ADX Tags Series 2 for non GPCRs
    Summary


 Successfully applied to members of the TNF receptor superfamily
  (TNFR1, DR3), as well as of the TGF receptor superfamily
  (BMP-2R), and of the FGF receptor superfamily (TrkB)
 Approach is applicable to all type 1 single-pass transmembrane
  receptors, numerous of these representing attractive drug targets
 Assays successfully amenable to HTS (TNFR1, TrkB and DR3
  ongoing) and used to test compounds synthesized within project
  (TNFR1 NAM project)
 Patent filed

                                                                14
Conclusion

 Addex has developed a set of unique biological tools, addressing
  GPCR as well as non-GPCR drug targets
 These tools have been developed to measure proximally the
  changes linked to receptor activation
 Signal output allows a time-dependent analysis of the receptor
  dynamics, which is crucial for allosteric modulator discovery
 With those tools in hand, we are strongly moving ahead towards
  our objectives which are to identify allosteric modulators for all
  types of receptors


                                                                   15
Addex Biological Patent Portfolio

        Assay               Details of filing
APRA (Accessory Protein       GB 0900860
 Relocalization Assay)    Application filed 2009
                             EP09178233
       Phoenyx
                          Application filed 2009
                             EP10160519
       ProxyLite
                          Application filed 2010

  ADX Tags Series 1             ongoing

                             EP10162068
  ADX Tags Series 2
                          Application filed 2010
                                                   16
Addex R&D Day 2010
11:00-11:15 Welcome & Overview – Vincent Mutel, CEO
11:15-11:45 Allosteric Platform – Robert Lutjens, Head of Core Biology
11:45-12:30 Selected Discovery Programs
    • mGluR4 PAM – Emmanuel Le Poul, Head of CNS
    • GLP1R PAM – Vincent Mutel, CEO
    • IL1R1 NAM – Laurent Galibert, Head of Inflammation
12:30 – 13:30 Lunch
13:30-13:50 ADX71943 – Sonia Poli, Head of Non-Clinical Development
13:50-14:50 ADX48621
    • PD-LID background & context – Tom Babic, i3 Research
    • Status & Plan – Charlotte Keywood, Chief Medical Officer
14:50-15:00 Closing Remarks – Vincent Mutel
15:00-15:45 Tour of Addex & Closing Reception

                                                                         17
allosteric modulators for human health




           www.addexpharma.com

                                         18

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Allosteric Platform Addex R&D day 2010

  • 1. Core Biology Robert Lütjens, Ph.D Addex Pharmaceuticals R&D Day May 11, 2010 1
  • 2. Addex Tools for AM Discovery  Addex has developed new proprietary tools, measuring molecular changes at the receptor level following its activation by the binding of its ligand  Those tools were conceived to assess the real kinetic changes associated with receptor allosteric modulation and, by doing so, remove off-target contribution in assay readout 2
  • 3. Novel tools for HTS of allosteric modulators: Assays developed for Non-GPCRs 3
  • 4. Non-GPCR AM Discovery  Current available biological tool arsenal is even poorer than for GPCRs, and has not been developed with allosteric modulators in mind  The most receptor-proximal measurements rely upon events happening downstream in cascades, sometimes hours after receptor activation. Readouts are carried out at integration nodes in canonical pathways, common to numerous signalling cascades triggered by various ligands 4
  • 5. Signaling pathways of cytokine receptors DR3 TNFR1 IL1R1 TLR RIP1 RIP1 TRADD TRADD TRAF5 TRAF2 TRAF5 TRAF2 Caspases Caspases TAK1 TAK1 Measured responses p38 p38 IKK IKK JNK JNK Death pathway NFB NFB NFB Stress pathway pathway Cytokine production At Addex, we have developed unique assay systems to better 5 measure allosteric modulation of receptors of interest
  • 6. ADX Tags Series 2 for non GPCRs Assay characteristics Type-1 transmembrane receptor Ligand –induced activation !l Tagged na si g receptor  Addex proprietary dynamic & receptor proximal assay performed with live cells  Monitors conformational and/or multimerization alterations  Tag positioning may or may not require truncation of receptors  HTS & Medchem 384-w plates compatible 6
  • 7. ADX Tags Series 2 for non GPCRs Example with TNFR1 NAM Project Project objective: Identify orally available, safe, selective, centrally and peripherally active small molecule antagonist (Negative Allosteric Modulators) targeting TNFR1 for the treatment of peripheral and central inflammatory conditions, as well as neurodegenerative diseases 7
  • 8. ADX Tags Series 2 for TNFR1 Assay performance Performance Selectivity Inhibition 300 350 250 TNF 250 300 A nti-T N FR 1 m A b Relative units TL1A Relative units 200 250 200 E nbrel IL1- Relative units 200 150 150 150 100 100 100 50 50 50 0 0 0 -11 -10 -9 -8 -7 -12 -11 -10 -9 -8 -7 -6 -7 -6 -5 -4 Log [TNF], g/ml Log [com pound], g/m L Lo g [co m po und], g/m l  Window signal/noise >25x, Z’ (EC80) > 0.6  Assay is TNFR1 selective  HTS successfully performed  Hit rate was 0.6% at > 50% inhibition 8
  • 9. ADX Tags Series 2 for TNFR1 Time-resolved output allows identification of receptor specific signatures 250000 T TNFR1 Tag output Intensity (I) 200000 Signature profiles TN 150000 F 3.010 7 100000 TNFR1 Tag output Intensity (I) DR3 50000 2.010 7 0 0 100 200 300 400 500 600 700 800 Time following TNF addition (Second) 1.010 7 250000 DR3 Tag output Intensity (I) 200000 0 100 200 300 400 500 600 150000 T T (s) TL 100000 1A I : Tag output (AUC) 50000 T : Time interval from agonist addition to response peak 0 0 100 200 300 400 500 600 700 800 Time following TL1A addition (Second) 9
  • 10. ADX Tags Series 2 for TNFR1 Compounds affect receptor signature differently ADX61410 ADX29342 3.010 7 3.010 7 TNF + DR ADX61410 TNF + DR ADX29342 DR TNF Tag output Intensity (I) Tag output Intensity (I) TNF + DR anti-TNFR1 mAb DR TNF 2.010 7 2.010 7 1.010 7 1.010 7 0 0 250 300 350 400 450 500 550 250 300 350 400 450 500 550 T (s) T (s) Both compounds inhibit TNF-induced tag2 TNFR1 activation, but ADX61410 does so without altering global TNFR1 signature profile, whereas ADX29342 strongly changes it 10
  • 11. ADX Tags Series 2 for TNFR1 Representative Compounds behave as non- competitive antagonists (NAMs) of TNFR1 4.010 7 no compound ADX60357-2 5.010 7 no compound ADX29342-1 1.87 uM 1.87 uM 3.75 uM 3.75 uM 7.5 uM 4.010 7 7.5 uM 3.010 7 15 uM 15 uM 30 uM 30 uM no compound no compound RLU (AUC) 3.010 7 RLU (AUC) 2.010 7 2.010 7 EC50 EC50 no compound 1.212e-009 no compound 9.548e-010 1.87 uM 1.346e-009 1.87 uM 8.337e-010 1.010 7 3.75 uM 9.482e-010 3.75 uM 7.267e-010 7.5 uM 9.928e-010 1.010 7 7.5 uM 7.395e-010 15 uM 7.246e-010 15 uM 7.406e-010 30 uM 3.753e-010 30 uM 5.977e-010 no compound 8.853e-010 no compound 8.521e-010 0 0 -11 -10 -9 -8 -7 -11 -10 -9 -8 -7 Log [TNF], g/ml Log [TNF], g/ml 5.010 7 no compound ADX52945-1 5.010 7 no compound ADX85142-1 1.87 uM 1.87 uM 3.75 uM 3.75 uM 4.010 7 7.5 uM 4.010 7 7.5 uM 15 uM 15 uM 30 uM 30 uM no compound no compound RLU (AUC) 3.010 7 RLU (AUC) 3.010 7 2.010 7 2.010 7 EC50 EC50 no compound 8.259e-010 no compound 6.951e-010 1.87 uM 8.103e-010 1.87 uM 5.447e-010 3.75 uM 7.300e-010 1.010 7 3.75 uM 5.214e-010 7.5 uM 8.333e-010 1.010 7 7.5 uM 4.240e-010 15 uM 8.878e-010 15 uM 3.683e-010 30 uM 7.596e-010 no compound 8.883e-010 30 uM 3.682e-010 0 no compound 6.328e-010 -11 -10 -9 -8 -7 0 Log [TNF], g/ml -11 -10 -9 -8 -7 Log [TNF], g/ml
  • 12. ADX Tags Series 2 for TNFR1 Identification of compounds with PAM or NAM effects R1 R2 A Linker 1 B A Linker 2 B ADX29342 ADX10612 120 80 % enhancement over buffer 100 % max response (AUC) 60 Tag Output 80 Tag Output 60 40 40 20 20 ADXtag2-IL1R at IL1- EC80 ADXtag2-IL1R at IL1- EC20 ADXtag2-TNFR1 at TNF EC80 ADXtag2-TNFR1 at TNF EC20 0 0 -7 -6 -5 -4 -7 -6 -5 -4 Log [ADX29342], (M) Log [ADX10612], (M) Existence of a functional switch from negative to positive TNFR1 modulation in identified series 12
  • 13. ADX Tags Series 2 Applicable to variety of receptor targets Assays developed for various receptor families : ADX Tags Series 2 for DR3 ADX Tags Series 2 for BMP-2R ADX Tags Series 2 for TrkB 125000000 6000000 400000 100000000 Relative Units Relative units Relative Units 300000 75000000 4000000 50000000 200000 2000000 25000000 100000 0 -10 -9 -8 -7 -6 -5 0 0 Log [compound], g/ml or M -10 -9 -8 -7 -6 -5 -4 -11 -10 -9 -8 -7 -6 -5 Log [compound], g/mL Log [BMP-2], g/ml BDNF, EC50 = 25ng/ml TL1A, EC50 = 25 ng/ml K252a on EC80 of BDNF, IC50 = 70 nM BMP-2, EC50 = 86 ng/ml DCR3, IC50 = 4.22 g/ml EC80 100ng/ml Window signal/noise >50x Window signal/noise >15x Window signal/noise >10x Z’ (EC20) > 0.4 Preparation for HTS ongoing 13
  • 14. ADX Tags Series 2 for non GPCRs Summary  Successfully applied to members of the TNF receptor superfamily (TNFR1, DR3), as well as of the TGF receptor superfamily (BMP-2R), and of the FGF receptor superfamily (TrkB)  Approach is applicable to all type 1 single-pass transmembrane receptors, numerous of these representing attractive drug targets  Assays successfully amenable to HTS (TNFR1, TrkB and DR3 ongoing) and used to test compounds synthesized within project (TNFR1 NAM project)  Patent filed 14
  • 15. Conclusion  Addex has developed a set of unique biological tools, addressing GPCR as well as non-GPCR drug targets  These tools have been developed to measure proximally the changes linked to receptor activation  Signal output allows a time-dependent analysis of the receptor dynamics, which is crucial for allosteric modulator discovery  With those tools in hand, we are strongly moving ahead towards our objectives which are to identify allosteric modulators for all types of receptors 15
  • 16. Addex Biological Patent Portfolio Assay Details of filing APRA (Accessory Protein GB 0900860 Relocalization Assay) Application filed 2009 EP09178233 Phoenyx Application filed 2009 EP10160519 ProxyLite Application filed 2010 ADX Tags Series 1 ongoing EP10162068 ADX Tags Series 2 Application filed 2010 16
  • 17. Addex R&D Day 2010 11:00-11:15 Welcome & Overview – Vincent Mutel, CEO 11:15-11:45 Allosteric Platform – Robert Lutjens, Head of Core Biology 11:45-12:30 Selected Discovery Programs • mGluR4 PAM – Emmanuel Le Poul, Head of CNS • GLP1R PAM – Vincent Mutel, CEO • IL1R1 NAM – Laurent Galibert, Head of Inflammation 12:30 – 13:30 Lunch 13:30-13:50 ADX71943 – Sonia Poli, Head of Non-Clinical Development 13:50-14:50 ADX48621 • PD-LID background & context – Tom Babic, i3 Research • Status & Plan – Charlotte Keywood, Chief Medical Officer 14:50-15:00 Closing Remarks – Vincent Mutel 15:00-15:45 Tour of Addex & Closing Reception 17
  • 18. allosteric modulators for human health www.addexpharma.com 18