2017-09-27-scholarly-html-ro

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Stian Soiland-Reyes

Scholarly HTML and Research Object eLife/stencila meeting, 2017-09-27 https://slides.com/soilandreyes/2017-09-27-ro/

https://doi.org/10.1007/978-3-319-60131-1_33
http://csarven.ca/dokieli-rww

A core value of librarianship lies in providing users with equal and immediate access to information. This is frequently not possible, however, particularly when it concerns providing access to academic research literature available through costly journal subscriptions. Drawing on a range of examples, this presentation describes individual and collective actions that librarians have taken to overcome commercial barriers and help to ensure equitable online access to research and scholarship. It also addresses initiatives and services that both academic and public libraries could be implementing and more broadly supporting if unrestricted access to information is truly a goal. Participants will be asked to consider their own perspectives on the open access movement, its intentions and limitations, and how they might support it in their own professional lives.

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Taverna is becoming an Apache Incubator project. What are the effects on Taverna as an open source project and its future development? HTML version: http://slides.com/soilandreyes/2014-10-30-taverna-incubator/ Wiki version: http://dev.mygrid.org.uk/wiki/display/developer/Taverna+as+an+Apache+Incubator+project Presented 2014-10-30 at Taverna Open Development Workshop http://dev.mygrid.org.uk/wiki/display/developer/Taverna+Open+Development+Workshop

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Presentation at BOSC 2013 / ISMB 2013. (PowerPoint 2013 source) PDF: https://www.slideshare.net/soilandreyes/2013-0719bosc-2013myexperimentresearchobjectsslides See also poster at http://www.slideshare.net/soilandreyes/2013-0718bosc-2013myexperimentresearchobjectsposter-24242509 or submitted abstract: https://docs.google.com/document/d/1jaAuPV-EnbsyI14L56HKHBQP7eDVfeXGLlK-LwohnWw/edit?usp=sharing We have evolved Research Objects as a mechanism to preserve digital resources related to research, by providing mechanisms, formats and architecture for describing aggregated resources (hypothesis, workflow, datasets, scripts, services), their relations (is input for, explains, used by), provenance (graph was derived from dataset A, B and C) and attribution (who contributed what, and when?). The website myExperiment is already popular for collaborating on, publishing and sharing scientific workflows, however we have found that for understanding and preserving a workflow over time, its definition is not enough, specially faced with workflow decay, services and tools that change over time. We have therefore adapted the research object model as a foundation for the myExperiment packs, allowing uploading of workflow runs, inputs, outputs and other files relevant to the workflow, relating them with annotations and integrated the Wf4Ever architecture for performing decay analysis and tracking a research object’s evolution as it and its constituent resources change over time.

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