Bioinformatics(collagen alpha 1)2. 3D structure of Collagen alpha 1
Alignment
Guid tree
Jalview
Fasta
Protein blast
Phylogenetic tree
Map viewer
Conclusion
Application
6. >tr|D3DSM7|D3DSM7_HUMAN Collagen, type VI, alpha 1, isoform CRA_a OS=Homo
sapiens GN=COL6A1 PE=4 SV=1
MRAARALLPLLLQACWTAAQDEPETPRAVAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIQGLTRMPGGRDALKSSVDAV
KYFGKGTYTDCAIKKGLEQLLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGVKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEAISQTIDTIVDMIK
NNVEQVCCSFECQPARGPPGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGY
QGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGP
PGP
KGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPG
PDGA
PGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKG
YRGD
EGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPGYPGNRGAPGIN
GTK
GYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGPPGHQGPPGPDECEILD
II
MKMCCEMQVRPHRPPVRAGQLREHWPAELRDCQGLRRQGHRPAEPGRAGQVRARAV
VRGC
GAVQPQPDAGAREPAQPQHPERAGAQGSHQEPAVDGGRHLHGGGPAVHAGPAAAAQ
PEQP HRPGHH
7. >tr|I0FP93|I0FP93_MACMU Collagen alpha-1(VI) chain OS=Macaca mulatta GN=COL6A1 PE=2
SV=1 MRAARALLPLLLQACWTAGQDEPETPRAVAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDDVEIIQGLTRMPGDRDTLKSRVDAI
KYFGKGTYTDCAIKKGLEQLLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGVKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEVISQTIDTIVDMIK
NNVEQVCCSFECQPARGPPGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGP
KGDPGAFGLKGEKGEPGADGEAGRPGSSGPPGDEGEPGEPGPPGEKGEAGDEGNPGPDGA
PGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGD
EGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGINGTK
GYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGPPGHPGPPGPDECEILDII
MKMCSCCECKCGPIDLLFVLDSSESIGLQNFEIAKDFVVKVIDRLSRDELVKFEPGQSYA
GVVQYSHSQMQEHVSLRSPSIRNVQELKEAIKNLQWMAGGTFTGEALQYTRDQLLPPSPN
NRIALVITDGRSDTQRDTTPLNVLCSPGVQVVSVGIKDVFDFVPGSDQLNVISCQGLAPS
QGRAGLSLVKENYAELLEDAFLKNVTAQICIDKKCPDYTCPIPFSSPADITILLDSSASV
GSHNFDTTKRFAKRLAERFLMAGRTDPAHDVRVAVVQYSGTGQQRPERASLQFLQNYTAL
ASAVDAMDFINDATDVNDALGYVTRFYREASSGAAKKRLLLFSDGNSQGATPAAIEKAVQ
EAQRAGIEIFVVVVGRQVNEPHIRVLVTGKTAEYDVAYGERHLFRVPSYQALLRGVFHQT
VSRKVALG
14. The rhesus(macaca mulatta) genome shares
about 93 percent of its sequence with the
human genome.
16. The rhesus is widely recognized as the best
animal model for human immunodeficiency
virus (HIV) infection.
It also serves as a valuable model for
studying other human infectious diseases and
for vaccine research.
The rhesus macaque genome sequence
enhances essential research in neuroscience,
behavioral biology, reproductive physiology,
endocrinology and cardiovascular studies.