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Aishath Reena
Jung JaeHee
Mariyam Shama
Nur Yasmin
Aminath Nadha
0336105
0332948
0336069
0336968
0336126
● Tripronuclear (3PN) zygotes have one oocyte nucleus and two sperm
nuclei.
● Discarded in clinics, during in vitro fertilization (IVF) clinical trials
● In this study, Tripronuclear (3PN) zygotes are used to investigate
CRISPR/Cas9-mediated gene editing in human cells.
● Used because of ethical concerns regarding gene editing in normal
embryos
● Ideal model system to examine the targeting efficiency and off-target
effects of CRISPR/Cas9 during early human embryonic development
Dispermy
Components
- gRNA: guide RNA, used to direct the
Cas9 protein to bind and cleave a
particular DNA sequence for genome
editing
- Cas: CRISPR-associated System,
endonuclease protein; able to cleave
nucleic acid.
- *PAM: protospacer adjacent motif, a short
specific sequence, essential for cleavage
by Cas endonuclease
*NHEJ: Non-Homologous End Joining
Objective: To cleave and repair HBB gene coding for protein Hemoglobin
using CRISPR/Cas9 system - can be used to correct mutations which leads
to disorders such as 𝛃-thalassemia.
* 𝛃-thalassemia is a genetic blood disorder (inability to produce RBC)
Application: CRISPR can efficiently cleave the
endogenous gene in human tripronuclear zygotes
(3PN) resulting in double strand break (DSB) which can
be repaired by non-homologous end joining (NHEJ)
and homologous recombination directed repair (HDR).
CRISPR
cas9
plasmid
Identification
& collection of
tripronuclear
zygotic
embryos
Embryo
vitrification
and
recovery
Analysis of
CRISPR/Cas9
induced
cleavages
Injection of GFP mRNA
and Cas9/gRNA/ssDNA in
different concentration
combinations into 3PN
zygotes intra-
cytoplasmically
Whole genome
amplification
using Embryos
Whole-exome
sequencing,
data
processing,
and off-target
analysis
A)DSBs may be repaired
through the double-
strand break repair (DSBR)
pathway or the non-
crossover synthesis-
dependent strand
annealing (SDSA) pathway
B)The HBD locus from the
7 recombined 3PN
embryos were similarly
examined as above.*
Indicates that the HBD
locus failed to be
amplified in two of the
embryos.
C)Repair of DSBs
generated by
CRISPR/Cas9 occurs
mainly through NHEJ.
If HDR is utilized, the
non-crossover
pathway is preferred.
- Of the 54 PCR-amplified embryos, 28 were cleaved by Cas9, indicating
an efficiency of ∼52%
- 4 of the 28 Cas9-cleaved embryos (14.3%) were clearly edited using the
ssDNA oligo as a repair template
- 7 out of the 28 cleaved embryos (25%) shows recombination of the HBB
gene with HBD , even in the presence of co-injected exogenous ssDNA
donor template
Advantage Limitation
- Increased Experimental
Convenience
- Less ethical concern as
3PN are discarded in
clinics anyway
- Used as an alternative to
normal human zygote
- Off-target changes leading
to unintended mutations
- Difficult to apply RNA
polymerase Ⅱ for gRNA
production
- Efficiency of delivery
method depends on the
type of target cells/tissues
Current developments
● Clinical applications are premature
● Introduction of a naturally occurring allele into early human 3PN
zygotes (Fan, 2016).
Future perspectives
● Need to improve the specificity and accuracy before proceeding to
clinical applications
● Need to understand the mechanisms more comprehensively
● Genetic mutations can be corrected in early embryos at a premature
stage (developing treatments for genetic disorders)
Reference
Liang, P., Xu, Y., Zhang, X., Ding, C., Huang, R., Zhang, Z., Lv, J.,
Xie, X., Chen, Y., Li, Y., Sun, Y., Bai, Y., Songyang, Z., Ma, W.,
Zhou, C. and Huang, J. (2015). CRISPR/Cas9-mediated gene
editing in human tripronuclear zygotes. Protein & Cell, 6(5),
pp.363-372.
Kang, X., He, W., Huang, Y., Yu,. Chen, Y., Gao, X., Sun, X., Fan,
Y. (2016). Introducing precise genetic modifications into
human 3PN embryos by CRISPR/Cas9-mediated genome
editing. J Assist Reprod Genet, 33(5), pp. 581-588

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CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes

  • 1. Aishath Reena Jung JaeHee Mariyam Shama Nur Yasmin Aminath Nadha 0336105 0332948 0336069 0336968 0336126
  • 2. ● Tripronuclear (3PN) zygotes have one oocyte nucleus and two sperm nuclei. ● Discarded in clinics, during in vitro fertilization (IVF) clinical trials ● In this study, Tripronuclear (3PN) zygotes are used to investigate CRISPR/Cas9-mediated gene editing in human cells. ● Used because of ethical concerns regarding gene editing in normal embryos ● Ideal model system to examine the targeting efficiency and off-target effects of CRISPR/Cas9 during early human embryonic development Dispermy
  • 3. Components - gRNA: guide RNA, used to direct the Cas9 protein to bind and cleave a particular DNA sequence for genome editing - Cas: CRISPR-associated System, endonuclease protein; able to cleave nucleic acid. - *PAM: protospacer adjacent motif, a short specific sequence, essential for cleavage by Cas endonuclease *NHEJ: Non-Homologous End Joining
  • 4. Objective: To cleave and repair HBB gene coding for protein Hemoglobin using CRISPR/Cas9 system - can be used to correct mutations which leads to disorders such as 𝛃-thalassemia. * 𝛃-thalassemia is a genetic blood disorder (inability to produce RBC) Application: CRISPR can efficiently cleave the endogenous gene in human tripronuclear zygotes (3PN) resulting in double strand break (DSB) which can be repaired by non-homologous end joining (NHEJ) and homologous recombination directed repair (HDR).
  • 5. CRISPR cas9 plasmid Identification & collection of tripronuclear zygotic embryos Embryo vitrification and recovery Analysis of CRISPR/Cas9 induced cleavages Injection of GFP mRNA and Cas9/gRNA/ssDNA in different concentration combinations into 3PN zygotes intra- cytoplasmically Whole genome amplification using Embryos Whole-exome sequencing, data processing, and off-target analysis
  • 6. A)DSBs may be repaired through the double- strand break repair (DSBR) pathway or the non- crossover synthesis- dependent strand annealing (SDSA) pathway B)The HBD locus from the 7 recombined 3PN embryos were similarly examined as above.* Indicates that the HBD locus failed to be amplified in two of the embryos. C)Repair of DSBs generated by CRISPR/Cas9 occurs mainly through NHEJ. If HDR is utilized, the non-crossover pathway is preferred.
  • 7. - Of the 54 PCR-amplified embryos, 28 were cleaved by Cas9, indicating an efficiency of ∼52% - 4 of the 28 Cas9-cleaved embryos (14.3%) were clearly edited using the ssDNA oligo as a repair template - 7 out of the 28 cleaved embryos (25%) shows recombination of the HBB gene with HBD , even in the presence of co-injected exogenous ssDNA donor template
  • 8. Advantage Limitation - Increased Experimental Convenience - Less ethical concern as 3PN are discarded in clinics anyway - Used as an alternative to normal human zygote - Off-target changes leading to unintended mutations - Difficult to apply RNA polymerase Ⅱ for gRNA production - Efficiency of delivery method depends on the type of target cells/tissues
  • 9. Current developments ● Clinical applications are premature ● Introduction of a naturally occurring allele into early human 3PN zygotes (Fan, 2016). Future perspectives ● Need to improve the specificity and accuracy before proceeding to clinical applications ● Need to understand the mechanisms more comprehensively ● Genetic mutations can be corrected in early embryos at a premature stage (developing treatments for genetic disorders)
  • 10. Reference Liang, P., Xu, Y., Zhang, X., Ding, C., Huang, R., Zhang, Z., Lv, J., Xie, X., Chen, Y., Li, Y., Sun, Y., Bai, Y., Songyang, Z., Ma, W., Zhou, C. and Huang, J. (2015). CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes. Protein & Cell, 6(5), pp.363-372. Kang, X., He, W., Huang, Y., Yu,. Chen, Y., Gao, X., Sun, X., Fan, Y. (2016). Introducing precise genetic modifications into human 3PN embryos by CRISPR/Cas9-mediated genome editing. J Assist Reprod Genet, 33(5), pp. 581-588

Editor's Notes

  1. - construction and use of CRISPR plasmids - identification and collection of 3PN embryos - embryo vitrification and recovery - analysis of CRISPR/Cas9 induced cleavages ( Five embryos with double peaks near the PAM sequence were randomly selected for the T7E1 assay) - Whole genome amplification using Embryos Whole-exome sequencing, data processing, and off-target analysis
  2. Whole-exome sequencing, data processing & off target analysis: exome sequenced on illumina HiSeq 2000 PE100 (Whole-exome sequencing is a widely used next-generation sequencing (NGS) method that involves sequencing the protein-coding regions of the genome.) three gRNAs (named G1, G2, and G3) that targeted different regions of the HBB gene, transfected the gRNA-Cas9 expression vectors into human 293T cells Sequencing analysis of the two regions targeted by G1 and G2 revealed distinct indel spectra, reflecting different NHEJ repair preferences at these two sites 7 recombined 3PN embryos were amplified and examined, we found that the HBD locus in the 5 successfully-amplified embryos remained intact, containing no HBB sequences results suggest that homologous recombination in human early embryos preferentially occur through the non-crossover HDR pathway
  3. In human embryos, repair of DSBs generated by CRISPR/Cas9 occurs mainly through NHEJ.
  4. Since it is a precise genome editing tool, it increased the experimental convenience Although some ethical concerns arose regarding this experiment, using 3PN are less ethical since they are discarded in IVF clinics anyway. 3PNs can be used as an alternative to normal human zygotes Limitations During this study, off target changes were detected, which lead to unwanted mutations Due to extensive posttranscriptional processing and modification of mRNA transcribed by RNA polymerase II, it is currently difficult to apply RNA polymerase II for gRNA production. Efficiency of delivery methods of CRISPR depends on the type of target cells or tissues
  5. The clinical applications of CRISPR/Cas9 mediated genome editing in human embryos is still premature at this stage This study was done in 2015, and in 2016, a couple of scientists successfully introduced a naturally occurring allele into an early human tripronuclear zygotes Due to the mosaicism and mutations at non targeted site, we Need to improve the specificity and accuracy of CRISPR/Cas9 system before proceeding to this technique-mediated clinical applications We need to more comprehensively understand the mechanisms of CRISPR/Cas9-mediated genome editing in human cells Using these principles, in the future, genetic mutations can be corrected in an early embryonic premature stage, enhancing treatments for genetic disorders Because the edited embryos are genetically mosaic, it would be impossible to predict gene editing outcomes through pre-implantation genetic diagnosis (PGD)..