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Breeder Interface
Need for breeder interface

•   To store, retrieve and use performance data
    in more efficient breeding decisions


•   To connect and make available in user
    friendly query the publicly available
    genomics, genetics and breeding data
Functions
• Data uploading
   – Phenotypic data
   – Genotipic data
   – QTL information
      • LA, LD, PBA
      • Genomicselection
   – Sequence information
• Interfaces developed to browse, query and download
  the data by variety, location, trait, marker
  (allele), year, pedigree
   – Parents selection
• Tools and automation for genetic analysis
Breeder Toolbox @ GDR
Breeder Toolbox @ GDR
Fruitbreedomics
Fruitbreedomics

• GDR BT allowsforphenotype or quantitative
  selection
• Developmentof a newmarker–traitmodule
  – Markersattributes
     • Relative effect on each trait – allele attributes
     • Genomicattributes on a gbrowser: position e info on the
       region (ld, genes, ..)
  – Accounting for multiple markers per trait
     • Weighting system formarkersby trait
     • Genomicselection
  – Multi-stageselection

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FruitBreedomics 1st Stakeholder Day meeting Breeding Interface

  • 2. Need for breeder interface • To store, retrieve and use performance data in more efficient breeding decisions • To connect and make available in user friendly query the publicly available genomics, genetics and breeding data
  • 3. Functions • Data uploading – Phenotypic data – Genotipic data – QTL information • LA, LD, PBA • Genomicselection – Sequence information • Interfaces developed to browse, query and download the data by variety, location, trait, marker (allele), year, pedigree – Parents selection • Tools and automation for genetic analysis
  • 6.
  • 8. Fruitbreedomics • GDR BT allowsforphenotype or quantitative selection • Developmentof a newmarker–traitmodule – Markersattributes • Relative effect on each trait – allele attributes • Genomicattributes on a gbrowser: position e info on the region (ld, genes, ..) – Accounting for multiple markers per trait • Weighting system formarkersby trait • Genomicselection – Multi-stageselection