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CELLULAR
NANOTECHNOLOGIES 1
Plasma membrane is about 50 atoms thick and serves as a
                 selective barrier.
Membranes include 1. sensors which enable the cell to respond to the
environment and 2. highly selective channels and pumps. Mechanical
properties of the membranes are remarkable. Enlarges and changes
shape as needed with no loss of integrity.
The lipid bilayer.
       A. An electron micrograph
The lipids in the cell
membrane are
amphipathic.
Phosphatidylcholine is the most common type of phospholipid.

                                         Positive
                                        negative
Three kinds of membrane lipids, all amphipathic, incude
phospholipids, sterols, and glycolipids.



                             Hydrophilic heads
Due to thermal motions, lipid molecules within a monolayer rotate very
rapidly and diffuse rapidly within the fluid membrane. Any drop in
temperature decreases the rate of lipid movement, making the lipid
bilayer less fluid. This inhibits many functions of the cell’s membranes.
All this has been
confirmed in whole
cells.
Viscosity - Fluidity
                (fluidity = 1/viscosity)
Classical Mechanical Definition
Resistance to an isotropic flow
Determines fluid strain rate

Membrane Biology Definition
Commonly defined as the ease of movement of a theoretical particle
  through the lipid membrane
Governs many physiological and metabolic functions of the cell
Determines mobility of intermembrane proteins
Membrane Viscosity
Changes in membrane viscosity are often
  indicative of intracellular conditions
affecting functions such as
• Carrier mediated Transport
• Membrane bound receptors
• Membrane bound enzymes
• Membrane fluidity is important to a cell for many
  reasons.
    – 1. Enables membrane proteins to diffuse rapidly
      and interact with one another - crucial in cell
      signaling etc.
    – 2. Provides a simple means of distributing
      membrane lipids and proteins by diffusion from
      sites of insertion.
    – 3. Allows membranes to fuse with one another and
      mix their molecules
    – 4. Ensures that membrane molecules are distributed
      evenly between daughter cells.
• Remember though, cell has control - cytoskeleton and other
   interactions can limit the mobility of specific lipids and proteins.
• The fluidity of a lipid bilayer depends on its
  composition.
  – As temperature and environment changes, the
    fluidity of the cell’s membranes must be kept
    functional.
  – The closer and more regular the packing of the
    tails, the more viscous and less fluid the bilayer
    will be
  – The length and degree of saturation with
    hydrogens affect their packing
     • shorter tails can not interact as much: more fluid
     • one of the two hydrocarbon tails often has a double
       bond - unsaturated. This creates a kink - less
       packing, more fluid.
CLIP
Cholesterol fills in the spaces left by the kinks; stiffens the bilayer and
makes it less fluid and less permeable.
> Tm


> Tm
Fluidity of blood cells membranes
• changes in membrane fluidity of blood cells have been reported during
  development and aging and as a result of physiological cell functions.
Membrane fluidity changes of blood cells have been described in
• thrombocythaemia,
• hyperlipidaemia,
• hypercholesterolaemia,
• hypertension,
• diabetes mellitus,
• obesity,
• septic conditions
• allergic and burnt patients
• alcoholics,
• Alzheimer's disease
Current Methods
        to assess membrane fluidity

FRAP (Fluorescence recovery after
   photobleaching)
• Focused laser beam photobleaches area on
   membrane
defects: Induced cross-linking from photo-oxidation
 May damage functional proteins
 Error is a function of laser beam radius
Fluorescence Anisotropy
• Internal rotation changes polarization plane
Defects: Rapid photobleaching
Filter absorption of signal
Stokes-Einstein equation:




the diffusion coefficient, D, for a particle in a free volume
depends on the Boltzmann constant (k), the absolute
temperature (T), the viscosity of the solution (h), and the
hydrodynamic radius (R) of the particle (or molecule).
However, lipids and proteins do not all float freely in the membrane.
The cell controls the movement of many proteins. Cells have ways of
confining particular plasma membrane proteins to localized
areas, creating membrane domains which are functionally specialized.

Proteins are
moved together
when signaled by
                                                      Bound by the
receptors like           Tethered to the              extracellular matrix
adhesion                 cell cortex
molecules.
                                                            Stopped by
                                                            diffusion
                                                            barriors.

Held by proteins on another cell
FLUORESCENCE
 ANISOTROPY
LIGHT
SOURCE
Limiti di intervallo



• Solido: r = 1
• Liquido a Fluidità infinita: r = 0
• 0<r<1
DPH
     DD




TMA-DPH
Fluorescence anisotropy imaging




   r values are showed in a pseudo-color scale
• SYSTEMIC SCLEROSIS




   Membrane Meno fluide in SSc
Fluorescence anisotropy for DPH of mononuclear cells
from normal controls (NC), IgA nephropathy (IGAN) subjects.



                      nephropathy
Lung cancer
Dot plot of fluidity variable in groups with different stages of the disease




fluidity




             Sok M. et al.; Ann Thorac Surg 2002;73:1567-1571
Predicted log relative risk (relative to the reference value at the median, for tumors as a
     function of fluidity , assessed by Cox modeling with restricted cubic splines)




                  Sok M. et al.; Ann Thorac Surg 2002;73:1567-1571
Nanomechanical analysis of
      cancer cells
the dynamic reorganization of the cytoskeleton has become a specific point of
interest regarding changes in cell morphology, motility, adhesion and invasion



  a change in the physical properties, in particular cell elasticity, of tissue cells has been
      recognized as an indication of disease and has emerged as a marker for cellular
  phenotypic events associated with cell adhesion and cytoskeletal organization
  In particular, several studies have shown a reduction in stiffness with increasing
      metastatic efficiency in human cancer cell lines using several different in vitro
      biomechanical assays
Labelling for DNA/Ber-EP4/F-actin (Fig. 1c) and DNA/Ber-
EP4/Calretinin (Fig. 1d) both showed staining of the small, round cells
for Ber-EP4 (red), a marker for metastatic adenocarcinoma cells, thus
confirming that the round, balled cells (shown optically in Fig. 1a) were
indeed metastatic adenocarcinoma cells.
 Arrowheads 1/4 tumour, arrow 1/4 mesothelial cells.
AFM: atomic force microscope
SFM: scanning force microscope              AFM
                           AFM probe scans over the
                 laser
    photodiode             surface (in contact)




         probe



                 piezo-
                                 e.g. living cells, chromatin
                 element
                                 fibers
Cantilever tip must be positioned on a
proper position of the cell body
Data collected from seven different clinical
 samples (positive for metastatic tumour, n
 40; negative for metastatic tumour, n 48)
 yielded average E values (mean+s.d. of
 0.53+0.10 kPa for tumour and 1.97+0.70
 kPa for benign mesothelial cells ,
 respectively
tumours




     control




elasticity
200nm
48n
m




28n
m
MOLECULES ENRICHED WITHIN LIPID RAFTS/CAVEOLAE

Cholesterol, sphingolipids, saturated lipids




                    (Palmitoilate)
COINVOLGIMENTO DEI LIPID RAFTS


Malattia di Alzheimer
Infiammazione
Malattie Cardiovascolari
Distrofia Muscolare
Parkinson
Lupus eritematoso
Malattie da Prioni (encefalopatie spongiformi)
Tumori
Ipertensione
FIG. 8. Signaling through caveolae




• Signaling through caveolae. The -adrenergic receptor ( -AR; blue) is a
  conventional G protein-coupled receptor with seven membrane-
  spanning domains. When stimulated, the activation of adenylyl
  cyclase, increases intracellular cAMP concentrations, resulting in the
  activation of protein kinase A (PKA). On the right, an activated
  epidermal growth factor receptor (EGF-R) is also shown docking with
  the caveola, leading to the activation of a proliferative pathway
  involving several caveolae-associated proteins of the p42/44 mitogen-
  activated protein kinase cascade (Ras/Raf/MEK/ERK).
Imaging lipid rafts
Imaging lipid rafts : AFM
Imaging lipid rafts : Phase-partitioning probes
lissamine rhodamine dipalmitoylphosphatidylethanolamine (rho-
DPPE)
 indocarbocyanine dye DiI
Partition in fluid phase (non-rafts)




Perylene
Partitions in ordered phase (rafts)
Imaging lipid rafts : phase sensitive probes


Laurdan is an environmentally sensitive fluorescence probe
that exhibits a 50-nm red shift as membranes undergo phase
transition from gel to fluid, due to altered water penetration
into the lipid bilayer
Ordered   Fluid phase
phase     (non-rafts)
(rafts)
Imaging lipid rafts :
 Fluorescence Excimer formation technique
ExcimerFormation
fluorophore-fluorophore interactions
Excimer
formation
imaging
Imaging lipid rafts : E.M.
Isolation and study of lipid rafts
A




B
Electrophoresis/ WB with antibodies
                                                               Flot-1 (49 kDa)


                                                               CD55 (70 kDa)


                                                               Fyn (59 kDa)


                                                               ALP (38 kDa)


                                                               Cav-1 (21 kDa)


                                                               Mit (60 kDa)


                                                               TfR (85 kDa)


                                                               GM1


                                 1 2 3 4 5 6        7 8 9 10



Gradient distribution of proteins of Caki-1 cells
A new form of mass
      spectrometry can
      determine a
      membrane’s chemical
      composition
Secondarya resolution of
      with ion mass
spectrometry (SIMS)
      less than 100
the sample is bombarded
      nanometers
with an incident ion or
molecular beam. The
beam locally vaporizes
the sample into secondary
molecular and atomic
ions. In time-of-flight
SIMS, the incident
ion beam is pulsed, and
the secondary ion mass-

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11membranes4

  • 2. Plasma membrane is about 50 atoms thick and serves as a selective barrier.
  • 3. Membranes include 1. sensors which enable the cell to respond to the environment and 2. highly selective channels and pumps. Mechanical properties of the membranes are remarkable. Enlarges and changes shape as needed with no loss of integrity.
  • 4. The lipid bilayer. A. An electron micrograph
  • 5. The lipids in the cell membrane are amphipathic.
  • 6. Phosphatidylcholine is the most common type of phospholipid. Positive negative
  • 7. Three kinds of membrane lipids, all amphipathic, incude phospholipids, sterols, and glycolipids. Hydrophilic heads
  • 8.
  • 9. Due to thermal motions, lipid molecules within a monolayer rotate very rapidly and diffuse rapidly within the fluid membrane. Any drop in temperature decreases the rate of lipid movement, making the lipid bilayer less fluid. This inhibits many functions of the cell’s membranes. All this has been confirmed in whole cells.
  • 10. Viscosity - Fluidity (fluidity = 1/viscosity) Classical Mechanical Definition Resistance to an isotropic flow Determines fluid strain rate Membrane Biology Definition Commonly defined as the ease of movement of a theoretical particle through the lipid membrane Governs many physiological and metabolic functions of the cell Determines mobility of intermembrane proteins
  • 11. Membrane Viscosity Changes in membrane viscosity are often indicative of intracellular conditions affecting functions such as • Carrier mediated Transport • Membrane bound receptors • Membrane bound enzymes
  • 12. • Membrane fluidity is important to a cell for many reasons. – 1. Enables membrane proteins to diffuse rapidly and interact with one another - crucial in cell signaling etc. – 2. Provides a simple means of distributing membrane lipids and proteins by diffusion from sites of insertion. – 3. Allows membranes to fuse with one another and mix their molecules – 4. Ensures that membrane molecules are distributed evenly between daughter cells. • Remember though, cell has control - cytoskeleton and other interactions can limit the mobility of specific lipids and proteins.
  • 13. • The fluidity of a lipid bilayer depends on its composition. – As temperature and environment changes, the fluidity of the cell’s membranes must be kept functional. – The closer and more regular the packing of the tails, the more viscous and less fluid the bilayer will be – The length and degree of saturation with hydrogens affect their packing • shorter tails can not interact as much: more fluid • one of the two hydrocarbon tails often has a double bond - unsaturated. This creates a kink - less packing, more fluid.
  • 14.
  • 15.
  • 16. CLIP
  • 17. Cholesterol fills in the spaces left by the kinks; stiffens the bilayer and makes it less fluid and less permeable.
  • 19.
  • 20. Fluidity of blood cells membranes • changes in membrane fluidity of blood cells have been reported during development and aging and as a result of physiological cell functions. Membrane fluidity changes of blood cells have been described in • thrombocythaemia, • hyperlipidaemia, • hypercholesterolaemia, • hypertension, • diabetes mellitus, • obesity, • septic conditions • allergic and burnt patients • alcoholics, • Alzheimer's disease
  • 21. Current Methods to assess membrane fluidity FRAP (Fluorescence recovery after photobleaching) • Focused laser beam photobleaches area on membrane defects: Induced cross-linking from photo-oxidation May damage functional proteins Error is a function of laser beam radius Fluorescence Anisotropy • Internal rotation changes polarization plane Defects: Rapid photobleaching Filter absorption of signal
  • 22.
  • 23. Stokes-Einstein equation: the diffusion coefficient, D, for a particle in a free volume depends on the Boltzmann constant (k), the absolute temperature (T), the viscosity of the solution (h), and the hydrodynamic radius (R) of the particle (or molecule).
  • 24.
  • 25. However, lipids and proteins do not all float freely in the membrane. The cell controls the movement of many proteins. Cells have ways of confining particular plasma membrane proteins to localized areas, creating membrane domains which are functionally specialized. Proteins are moved together when signaled by Bound by the receptors like Tethered to the extracellular matrix adhesion cell cortex molecules. Stopped by diffusion barriors. Held by proteins on another cell
  • 27.
  • 28.
  • 29.
  • 30.
  • 32.
  • 33. Limiti di intervallo • Solido: r = 1 • Liquido a Fluidità infinita: r = 0 • 0<r<1
  • 34. DPH DD TMA-DPH
  • 35.
  • 36. Fluorescence anisotropy imaging r values are showed in a pseudo-color scale
  • 37. • SYSTEMIC SCLEROSIS Membrane Meno fluide in SSc
  • 38. Fluorescence anisotropy for DPH of mononuclear cells from normal controls (NC), IgA nephropathy (IGAN) subjects. nephropathy
  • 40. Dot plot of fluidity variable in groups with different stages of the disease fluidity Sok M. et al.; Ann Thorac Surg 2002;73:1567-1571
  • 41. Predicted log relative risk (relative to the reference value at the median, for tumors as a function of fluidity , assessed by Cox modeling with restricted cubic splines) Sok M. et al.; Ann Thorac Surg 2002;73:1567-1571
  • 43. the dynamic reorganization of the cytoskeleton has become a specific point of interest regarding changes in cell morphology, motility, adhesion and invasion a change in the physical properties, in particular cell elasticity, of tissue cells has been recognized as an indication of disease and has emerged as a marker for cellular phenotypic events associated with cell adhesion and cytoskeletal organization In particular, several studies have shown a reduction in stiffness with increasing metastatic efficiency in human cancer cell lines using several different in vitro biomechanical assays
  • 44. Labelling for DNA/Ber-EP4/F-actin (Fig. 1c) and DNA/Ber- EP4/Calretinin (Fig. 1d) both showed staining of the small, round cells for Ber-EP4 (red), a marker for metastatic adenocarcinoma cells, thus confirming that the round, balled cells (shown optically in Fig. 1a) were indeed metastatic adenocarcinoma cells. Arrowheads 1/4 tumour, arrow 1/4 mesothelial cells.
  • 45. AFM: atomic force microscope SFM: scanning force microscope AFM AFM probe scans over the laser photodiode surface (in contact) probe piezo- e.g. living cells, chromatin element fibers
  • 46. Cantilever tip must be positioned on a proper position of the cell body
  • 47. Data collected from seven different clinical samples (positive for metastatic tumour, n 40; negative for metastatic tumour, n 48) yielded average E values (mean+s.d. of 0.53+0.10 kPa for tumour and 1.97+0.70 kPa for benign mesothelial cells , respectively
  • 48. tumours control elasticity
  • 49. 200nm
  • 50.
  • 52.
  • 53.
  • 54. MOLECULES ENRICHED WITHIN LIPID RAFTS/CAVEOLAE Cholesterol, sphingolipids, saturated lipids (Palmitoilate)
  • 55.
  • 56. COINVOLGIMENTO DEI LIPID RAFTS Malattia di Alzheimer Infiammazione Malattie Cardiovascolari Distrofia Muscolare Parkinson Lupus eritematoso Malattie da Prioni (encefalopatie spongiformi) Tumori Ipertensione
  • 57.
  • 58. FIG. 8. Signaling through caveolae • Signaling through caveolae. The -adrenergic receptor ( -AR; blue) is a conventional G protein-coupled receptor with seven membrane- spanning domains. When stimulated, the activation of adenylyl cyclase, increases intracellular cAMP concentrations, resulting in the activation of protein kinase A (PKA). On the right, an activated epidermal growth factor receptor (EGF-R) is also shown docking with the caveola, leading to the activation of a proliferative pathway involving several caveolae-associated proteins of the p42/44 mitogen- activated protein kinase cascade (Ras/Raf/MEK/ERK).
  • 60.
  • 62. Imaging lipid rafts : Phase-partitioning probes lissamine rhodamine dipalmitoylphosphatidylethanolamine (rho- DPPE) indocarbocyanine dye DiI Partition in fluid phase (non-rafts) Perylene Partitions in ordered phase (rafts)
  • 63.
  • 64. Imaging lipid rafts : phase sensitive probes Laurdan is an environmentally sensitive fluorescence probe that exhibits a 50-nm red shift as membranes undergo phase transition from gel to fluid, due to altered water penetration into the lipid bilayer
  • 65.
  • 66. Ordered Fluid phase phase (non-rafts) (rafts)
  • 67.
  • 68. Imaging lipid rafts : Fluorescence Excimer formation technique
  • 69.
  • 71.
  • 74. Isolation and study of lipid rafts
  • 75. A B
  • 76. Electrophoresis/ WB with antibodies Flot-1 (49 kDa) CD55 (70 kDa) Fyn (59 kDa) ALP (38 kDa) Cav-1 (21 kDa) Mit (60 kDa) TfR (85 kDa) GM1 1 2 3 4 5 6 7 8 9 10 Gradient distribution of proteins of Caki-1 cells
  • 77. A new form of mass spectrometry can determine a membrane’s chemical composition Secondarya resolution of with ion mass spectrometry (SIMS) less than 100 the sample is bombarded nanometers with an incident ion or molecular beam. The beam locally vaporizes the sample into secondary molecular and atomic ions. In time-of-flight SIMS, the incident ion beam is pulsed, and the secondary ion mass-