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Evaluating vaccination strategies
to control foot-and-mouth disease:
A country comparison study
A simulation modelling study by the QUADS Epiteam:
Robert SANSON, Thomas RAWDON, Graeme GARNER,
Mark STEVENSON, Sharon ROCHE, Charlotte COOK,
Colin BIRCH, Tom SMYLIE, Kelly PATYK, Caroline DUBÉ,
Zhidong YU, Kim FORDE-FOLLE
Introduction
 Quadrilateral Countries: (Australia, Canada, New Zealand, USA) plus
others e.g. UK, Ireland and Netherlands
 Conducted FMD disease spread comparison projects since 2005
 Current focus – FMD vaccination and EDIs:
 Phase I FMD vaccination study – used a UK FMD outbreak exercise
scenario to compare benefits of Vaccination vs. Stamping out (SO):
 Roche SE, Garner MG, Sanson RL, Cook C, Birch C, Backer JA, Dubé C, Patyk KA, Stevenson MA, Yu Z,
Rawdon TG, Gauntlett F. Evaluating vaccination strategies to control foot-and-mouth disease: a model
comparison study. Epidemiology & Infection 2015 143 (6), 1256-1275: http://dx.doi.org/10.1017/S0950268814001927
 Phase II FMD vaccination study – five countries repeated the
simulations to assess in country specific settings:
 Farm population data, introduction scenarios, response policy and resourcing specific to each country
 Rawdon TG, Stevenson MA, Sanson RL, Garner MG, Cook C, Roche SE, Birch CPD, Dube C, Patyk KA,
Smylie T, Yu ZD. Evaluating vaccination strategies to control foot-and-mouth disease: a country comparison study.
Epidemiology & Infection 2018 146(9):1138-1150: http://dx.doi.org/10.1017/S0950268818001243
Introduction
 Quadrilateral Countries: (Australia, Canada, New Zealand, USA) plus
others e.g. UK, Ireland and Netherlands
 Conducted FMD disease spread comparison projects since 2005
 Current focus – FMD vaccination and EDIs:
 Phase I FMD vaccination study – used a UK FMD outbreak exercise
scenario to compare benefits of Vaccination vs. Stamping out (SO):
 Roche SE, Garner MG, Sanson RL, Cook C, Birch C, Backer JA, Dubé C, Patyk KA, Stevenson MA, Yu Z,
Rawdon TG, Gauntlett F. Evaluating vaccination strategies to control foot-and-mouth disease: a model
comparison study. Epidemiology & Infection 2015 143 (6), 1256-1275: http://dx.doi.org/10.1017/S0950268814001927
 Phase II FMD vaccination study – five countries repeated the
simulations to assess in country specific settings:
 Farm population data, introduction scenarios, response policy and resourcing specific to each country
 Rawdon TG, Stevenson MA, Sanson RL, Garner MG, Cook C, Roche SE, Birch CPD, Dube C, Patyk KA,
Smylie T, Yu ZD. Evaluating vaccination strategies to control foot-and-mouth disease: a country comparison study.
Epidemiology & Infection 2018 146(9):1138-1150: http://dx.doi.org/10.1017/S0950268818001243
Introduction
 Quadrilateral Countries: (Australia, Canada, New Zealand, USA) plus
others e.g. UK, Ireland and Netherlands
 Conducted FMD disease spread comparison projects since 2005
 Current focus – FMD vaccination and EDIs:
 Phase I FMD vaccination study – used a UK FMD outbreak exercise
scenario to compare benefits of Vaccination vs. Stamping out (SO):
 Roche SE, Garner MG, Sanson RL, Cook C, Birch C, Backer JA, Dubé C, Patyk KA, Stevenson MA, Yu Z,
Rawdon TG, Gauntlett F. Evaluating vaccination strategies to control foot-and-mouth disease: a model
comparison study. Epidemiology & Infection 2015 143 (6), 1256-1275: http://dx.doi.org/10.1017/S0950268814001927
 Phase II FMD vaccination study – five countries repeated the
simulations to assess in country specific settings:
 Farm population data, introduction scenarios, response policy and resourcing specific to each country
 Rawdon TG, Stevenson MA, Sanson RL, Garner MG, Cook C, Roche SE, Birch CPD, Dube C, Patyk KA,
Smylie T, Yu ZD. Evaluating vaccination strategies to control foot-and-mouth disease: a country comparison study.
Epidemiology & Infection 2018 146(9):1138-1150: http://dx.doi.org/10.1017/S0950268818001243
Study Objectives
 Assess the robustness of particular vaccination strategies
under different demographics and country specific settings –
five countries
 Strategies were selected to explore key areas of interest when
developing disease response policy, including:
 Vaccination timing (early vs. late)
 Cattle farms only (vs. all farm types)
 Limiting vaccination to high-risk zones
 Limiting vaccination resources (personnel and/or doses available)
Methods - approach Australia
UK
USA
Canada NZ
 5 countries:
 Australia, United Kingdom, USA, New Zealand, Canada
 4 modelling platforms:
 AusSpread (Australia), Exodis (UK), InterSpread Plus (NZ
and Canada), NAADSM (USA)
 Each country used country-specific: denominator data, spread
parameters, response policy and ‘manpower’ settings
 Each country created a ‘large scale’ outbreak scenario:
 Ran a plausible introduction scenario and simulated 100 iterations of the
‘silent phase’ following FMD virus introduction
 From these, an iteration chosen representing 90th percentile in terms of
numbers of infected premises (IPs) – this was used to start all further
testing of vaccination strategies
Note: Zone size fixed - effects of vaccine zone size not evaluated in this study
Methods - vaccination strategies tested
Strategy Zone size Timing Species
Areas
vaccinated
Resources
SO NA NA NA NA NA
VS1 3km 10d All All Resource limits
VS2 3km 17d All All Resource limits
VS3 3km 17d
Cattle farms
only (All spp.)
All Resource limits
VS4 3km 17d All High risk areas Resource limits
VS5 3km 10d All All Unlimited resources
Note: Zone size fixed - effects of vaccine zone size not evaluated in this study
Methods - analysis
 Descriptive analyses: SO vs VS1-VS5
 3-D graphs to assess ‘pay-off’ related to:
 Number of infected premises (IPs)
 Outbreak duration
 Doses used – representing # ‘extra’ animals culled as part of a
‘vaccinate-to-remove’ strategy
 Negative binomial regression of variables associated with the number
of IPs
 Multiple linear regression of variables associated with outbreak
duration
SO = Stamping out only
VS1 = Early vaccination
VS2 = Late vaccination
VS3 = Late vaccination & cattle farms only
VS4 = Late vaccination and high risk areas only
VS5 = Early vaccination & unlimited resources
Results – NZ outputs
SO = Stamping out only
VS1 = Early vaccination
VS2 = Late vaccination
VS3 = Late vaccination & cattle farms only
VS4 = Late vaccination and high risk areas only
VS5 = Early vaccination & unlimited resources
Results – Canada
= ‘Stamping out’ only
= Early vaccination
= Late vaccination
= Late vaccination & cattle farms only
= Late vaccination and high risk areas only
= Early vaccination & unlimited resources
• Defining response
objective
• The need to weigh
up various potential
objectives
Results – response objectives matter
Results – Regression coefficients associated
with response objective (#IPs or Duration)
Variable #IPs Duration Comment
Timing
1.11
(1.07 to 1.14)
--
Late vaccination (17d) significantly increases
number of IPs compared to early vaccination
(10d). Duration not significantly affected
Species -- --
‘Cattle farm-only’ vaccination not significantly
different to all-farm vaccination
High risk areas
1.06
(1.03 to 1.10)
7.59
(5 to 10)
Vaccination of high risk areas significantly
increases number of IPs and Duration
Resources
0.90
(0.87 to 0.94)
-8.25
(-11 to -5)
Consistent protective effect of ‘unlimited
resources’ on both number of IPs and duration
Note: Zone size fixed - effects of vaccine zone size not evaluated in this study
Discussion
 The study highlights the effectiveness of
vaccination as an adjunct to ‘Stamping Out’ for
severe FMD outbreaks
 A consistent pattern is identified across the
countries in the effectiveness of certain
vaccination strategies
 Findings guide key decisions when considering
vaccination during a severe FMD outbreak
Discussion (contd..)
 Findings across the 5 countries reinforced the findings of
previous QUADs study based on a UK specific scenario:
Timing: the importance of an early decision to
vaccinate
Risk-based strategies: species-specific approaches
show potential, while risk-area approaches currently
weak
Resources: key role played by effective resourcing of
the response
Note: Effects of vaccine zone size and type were not evaluated in this study
Conclusions
 Study also highlights the importance of a clearly defined response
objective
 Response objectives often compete:
 Total #IPs: traditional measure
 Duration: may be a more critical an outcome than Total #IPs
 # Animals vaccinated:
 OIE policy setting: Vaccinate-to-remain OR vaccinate-to-remove
 Species-specific strategies more relevant under current OIE settings
 Important for decision makers/response managers to understand
the critical importance of defining a required outcome (objective)
Conclusions (contd..)
 Study demonstrates the value of International
collaboration
 Future work includes:
 Early Decision Indicators (EDI): Predicting when a large outbreak might
be developing
 Optimum resourcing: Understand the optimum resources for the
response effort (vaccination)
 Risk-based strategies: such as species-specific vaccination – another
crucial area for research
 Economics: linking model outcomes to economics ($$) including OIE
policy constraints, trade and socio-economic effects
Thank you
The QUADS EpiTeam
- would like to acknowledge the support of all
participating countries -
We would like to thank:
Supporting Governments, Departments and Organisations:
 Department for Environment Food and Rural Affairs, Scottish Government
and Welsh Government – U.K.
 Ministry for Primary Industries – New Zealand
 Canadian Food Inspection Agency
 Alberta Agriculture and Forestry
 U.S. Department of Agriculture
 Department of Agriculture and Water Resources - Australia
 National Centre for Food Protection and Defence
 National Veterinary Institute
 AsureQuality Limited
 University of Melbourne
 University of Minnesota
18

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Evaluating vaccination strategies to control foot-and-mouth disease: A country comparison study

  • 1. Evaluating vaccination strategies to control foot-and-mouth disease: A country comparison study A simulation modelling study by the QUADS Epiteam: Robert SANSON, Thomas RAWDON, Graeme GARNER, Mark STEVENSON, Sharon ROCHE, Charlotte COOK, Colin BIRCH, Tom SMYLIE, Kelly PATYK, Caroline DUBÉ, Zhidong YU, Kim FORDE-FOLLE
  • 2. Introduction  Quadrilateral Countries: (Australia, Canada, New Zealand, USA) plus others e.g. UK, Ireland and Netherlands  Conducted FMD disease spread comparison projects since 2005  Current focus – FMD vaccination and EDIs:  Phase I FMD vaccination study – used a UK FMD outbreak exercise scenario to compare benefits of Vaccination vs. Stamping out (SO):  Roche SE, Garner MG, Sanson RL, Cook C, Birch C, Backer JA, Dubé C, Patyk KA, Stevenson MA, Yu Z, Rawdon TG, Gauntlett F. Evaluating vaccination strategies to control foot-and-mouth disease: a model comparison study. Epidemiology & Infection 2015 143 (6), 1256-1275: http://dx.doi.org/10.1017/S0950268814001927  Phase II FMD vaccination study – five countries repeated the simulations to assess in country specific settings:  Farm population data, introduction scenarios, response policy and resourcing specific to each country  Rawdon TG, Stevenson MA, Sanson RL, Garner MG, Cook C, Roche SE, Birch CPD, Dube C, Patyk KA, Smylie T, Yu ZD. Evaluating vaccination strategies to control foot-and-mouth disease: a country comparison study. Epidemiology & Infection 2018 146(9):1138-1150: http://dx.doi.org/10.1017/S0950268818001243
  • 3. Introduction  Quadrilateral Countries: (Australia, Canada, New Zealand, USA) plus others e.g. UK, Ireland and Netherlands  Conducted FMD disease spread comparison projects since 2005  Current focus – FMD vaccination and EDIs:  Phase I FMD vaccination study – used a UK FMD outbreak exercise scenario to compare benefits of Vaccination vs. Stamping out (SO):  Roche SE, Garner MG, Sanson RL, Cook C, Birch C, Backer JA, Dubé C, Patyk KA, Stevenson MA, Yu Z, Rawdon TG, Gauntlett F. Evaluating vaccination strategies to control foot-and-mouth disease: a model comparison study. Epidemiology & Infection 2015 143 (6), 1256-1275: http://dx.doi.org/10.1017/S0950268814001927  Phase II FMD vaccination study – five countries repeated the simulations to assess in country specific settings:  Farm population data, introduction scenarios, response policy and resourcing specific to each country  Rawdon TG, Stevenson MA, Sanson RL, Garner MG, Cook C, Roche SE, Birch CPD, Dube C, Patyk KA, Smylie T, Yu ZD. Evaluating vaccination strategies to control foot-and-mouth disease: a country comparison study. Epidemiology & Infection 2018 146(9):1138-1150: http://dx.doi.org/10.1017/S0950268818001243
  • 4. Introduction  Quadrilateral Countries: (Australia, Canada, New Zealand, USA) plus others e.g. UK, Ireland and Netherlands  Conducted FMD disease spread comparison projects since 2005  Current focus – FMD vaccination and EDIs:  Phase I FMD vaccination study – used a UK FMD outbreak exercise scenario to compare benefits of Vaccination vs. Stamping out (SO):  Roche SE, Garner MG, Sanson RL, Cook C, Birch C, Backer JA, Dubé C, Patyk KA, Stevenson MA, Yu Z, Rawdon TG, Gauntlett F. Evaluating vaccination strategies to control foot-and-mouth disease: a model comparison study. Epidemiology & Infection 2015 143 (6), 1256-1275: http://dx.doi.org/10.1017/S0950268814001927  Phase II FMD vaccination study – five countries repeated the simulations to assess in country specific settings:  Farm population data, introduction scenarios, response policy and resourcing specific to each country  Rawdon TG, Stevenson MA, Sanson RL, Garner MG, Cook C, Roche SE, Birch CPD, Dube C, Patyk KA, Smylie T, Yu ZD. Evaluating vaccination strategies to control foot-and-mouth disease: a country comparison study. Epidemiology & Infection 2018 146(9):1138-1150: http://dx.doi.org/10.1017/S0950268818001243
  • 5. Study Objectives  Assess the robustness of particular vaccination strategies under different demographics and country specific settings – five countries  Strategies were selected to explore key areas of interest when developing disease response policy, including:  Vaccination timing (early vs. late)  Cattle farms only (vs. all farm types)  Limiting vaccination to high-risk zones  Limiting vaccination resources (personnel and/or doses available)
  • 6. Methods - approach Australia UK USA Canada NZ  5 countries:  Australia, United Kingdom, USA, New Zealand, Canada  4 modelling platforms:  AusSpread (Australia), Exodis (UK), InterSpread Plus (NZ and Canada), NAADSM (USA)  Each country used country-specific: denominator data, spread parameters, response policy and ‘manpower’ settings  Each country created a ‘large scale’ outbreak scenario:  Ran a plausible introduction scenario and simulated 100 iterations of the ‘silent phase’ following FMD virus introduction  From these, an iteration chosen representing 90th percentile in terms of numbers of infected premises (IPs) – this was used to start all further testing of vaccination strategies Note: Zone size fixed - effects of vaccine zone size not evaluated in this study
  • 7. Methods - vaccination strategies tested Strategy Zone size Timing Species Areas vaccinated Resources SO NA NA NA NA NA VS1 3km 10d All All Resource limits VS2 3km 17d All All Resource limits VS3 3km 17d Cattle farms only (All spp.) All Resource limits VS4 3km 17d All High risk areas Resource limits VS5 3km 10d All All Unlimited resources Note: Zone size fixed - effects of vaccine zone size not evaluated in this study
  • 8. Methods - analysis  Descriptive analyses: SO vs VS1-VS5  3-D graphs to assess ‘pay-off’ related to:  Number of infected premises (IPs)  Outbreak duration  Doses used – representing # ‘extra’ animals culled as part of a ‘vaccinate-to-remove’ strategy  Negative binomial regression of variables associated with the number of IPs  Multiple linear regression of variables associated with outbreak duration
  • 9. SO = Stamping out only VS1 = Early vaccination VS2 = Late vaccination VS3 = Late vaccination & cattle farms only VS4 = Late vaccination and high risk areas only VS5 = Early vaccination & unlimited resources Results – NZ outputs
  • 10. SO = Stamping out only VS1 = Early vaccination VS2 = Late vaccination VS3 = Late vaccination & cattle farms only VS4 = Late vaccination and high risk areas only VS5 = Early vaccination & unlimited resources Results – Canada
  • 11. = ‘Stamping out’ only = Early vaccination = Late vaccination = Late vaccination & cattle farms only = Late vaccination and high risk areas only = Early vaccination & unlimited resources • Defining response objective • The need to weigh up various potential objectives Results – response objectives matter
  • 12. Results – Regression coefficients associated with response objective (#IPs or Duration) Variable #IPs Duration Comment Timing 1.11 (1.07 to 1.14) -- Late vaccination (17d) significantly increases number of IPs compared to early vaccination (10d). Duration not significantly affected Species -- -- ‘Cattle farm-only’ vaccination not significantly different to all-farm vaccination High risk areas 1.06 (1.03 to 1.10) 7.59 (5 to 10) Vaccination of high risk areas significantly increases number of IPs and Duration Resources 0.90 (0.87 to 0.94) -8.25 (-11 to -5) Consistent protective effect of ‘unlimited resources’ on both number of IPs and duration Note: Zone size fixed - effects of vaccine zone size not evaluated in this study
  • 13. Discussion  The study highlights the effectiveness of vaccination as an adjunct to ‘Stamping Out’ for severe FMD outbreaks  A consistent pattern is identified across the countries in the effectiveness of certain vaccination strategies  Findings guide key decisions when considering vaccination during a severe FMD outbreak
  • 14. Discussion (contd..)  Findings across the 5 countries reinforced the findings of previous QUADs study based on a UK specific scenario: Timing: the importance of an early decision to vaccinate Risk-based strategies: species-specific approaches show potential, while risk-area approaches currently weak Resources: key role played by effective resourcing of the response Note: Effects of vaccine zone size and type were not evaluated in this study
  • 15. Conclusions  Study also highlights the importance of a clearly defined response objective  Response objectives often compete:  Total #IPs: traditional measure  Duration: may be a more critical an outcome than Total #IPs  # Animals vaccinated:  OIE policy setting: Vaccinate-to-remain OR vaccinate-to-remove  Species-specific strategies more relevant under current OIE settings  Important for decision makers/response managers to understand the critical importance of defining a required outcome (objective)
  • 16. Conclusions (contd..)  Study demonstrates the value of International collaboration  Future work includes:  Early Decision Indicators (EDI): Predicting when a large outbreak might be developing  Optimum resourcing: Understand the optimum resources for the response effort (vaccination)  Risk-based strategies: such as species-specific vaccination – another crucial area for research  Economics: linking model outcomes to economics ($$) including OIE policy constraints, trade and socio-economic effects
  • 17. Thank you The QUADS EpiTeam - would like to acknowledge the support of all participating countries -
  • 18. We would like to thank: Supporting Governments, Departments and Organisations:  Department for Environment Food and Rural Affairs, Scottish Government and Welsh Government – U.K.  Ministry for Primary Industries – New Zealand  Canadian Food Inspection Agency  Alberta Agriculture and Forestry  U.S. Department of Agriculture  Department of Agriculture and Water Resources - Australia  National Centre for Food Protection and Defence  National Veterinary Institute  AsureQuality Limited  University of Melbourne  University of Minnesota 18