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Climate services and early warning systems
for infectious disease outbreaks
Rachel Lowe
Royal Society Dorothy Hodgkin Fellow
London School of Hygiene & Tropical Medicine
24 October 2017, THET annual conference, London, UK
Global framework for climate services (GFCS)
2
• Manage the risks of climate variability and change.
• Transform climate information into relevant, usable decision-support tools.
All these sectors have a big impact on our health!
Climate services for health
• Partnership
• Research
• Product development & delivery
• Evaluation
• Capacity building
• Co-developed by health and climate
professionals.
3
Lowe et al. Dengue EWS
Lowe et al. Capacity Building
From global observations to local interventions
4
The Economist
Early warning and response systems
• Early warning systems that account for
multiple disease risk factors can help to
implement timely control measures.
• Seasonal climate forecasts provide an
opportunity to anticipate epidemics
several months in advance.
5
Dengue in Brazil
6
• Model framework developed in collaboration with
European-Brazilian climate and health institutions.
• Data (dengue, climate, cartographic, demographic,
socio-economic) to formulate model, produce
probabilistic dengue predictions for >550 microregions.
• Optimum trigger alert thresholds determined for
scenarios of medium-risk and high-risk of dengue,
according to incidence alert levels defined by the
Ministry of Health.
Lowe et al., 2014, Lancet Infect Dis
Probabilistic dengue forecasts in Brazil
7
• Early warning framework applied to predict dengue risk for the World Cup in Brazil.
• Category boundaries: 100 and 300 cases per 100,000 inhabitants.
Probability of observing correct category
8
Low Medium High
Lowe et al., 2016, eLife
Comparison of forecast to null model
9
Comparison of hit rate and false alarm rate for forecast model (blue) and
seasonal average null model (orange) for June 2000-2014.
2014 event
hit rate: 57% (33%)
false alarm rate (type I error rate): 23% (13%)
miss rate (type II error rate): 43% (67%)Lowe et al., 2016, eLife
El Niño and dengue in Ecuador
10
• El Niño a robust predictor of dengue
outbreaks in El Oro province.
• Seasonal climate forecasts more skillful
during El Niño events.
• Forecasts of temperature, rainfall and El Niño
could provide dengue early warnings.
Stewart-Ibarra & Lowe, 2013, AJTMH
El Niño
parameter
estimate
El Oro
El Niño and rainfall association (JFM, 2 mon lag)
11
On February 26, 2016, over 170 mm of rain fell in 10 hours, and coincided
with high tides, causing the worst flooding since the 1997-1998 El Niño.
Climate and dengue associations
12
Cooler and drier than usual  less dengue
Warmer and wetter than usual  more dengue
Lowe et al., 2017 Lancet Planet Health
Precipitation Temperature
Ensemble climate forecasts (24 members) for
precipitation and minimum temperature 2016, Ecuador
DENGUE PRECIP
MIN TEMP ENSO
Current practice: average over last 5 years
13
Climate-driven dengue forecast, Machala 2016
14
84% chance of
exceeding
threshold of
95% upper CI
for previous
five years
Month
log(dengueincidencerate)
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0246810
J F M A M J J A S O N
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Mean (2011−2015)
Upper 95% CI (2011−2015)
Predicted median 2016
95% prediction interval
Peak occurred earlier than expected
15
Month
log(dengueincidencerate)
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0246810
J F M A M J J A S O N
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Observed
Mean (2011−2015)
Upper 95% CI (2011−2015)
Predicted median 2016
95% prediction interval
Lowe et al., 2017 Lancet Planet Health
Timing: climate forecasts
Magnitude: correct misreporting
Decision making scenarios
16
LATIN AMERICA
QUEENSLAND
MEDITERRANEAN
UK
• Scenario A:
Manage simultaneous outbreaks
in endemic settings
(dengue, chikungunya, Zika, yellow fever).
• Scenario B:
Resist local transmission
in disease free yet mosquito-infested areas
(infected returned travellers, suitable climate).
16
Thank you for your attention!
Questions?
rachel.lowe@lshtm.ac.uk
@drrachellowe
17

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Day 2 Speaker Presentation - Dr Rachel Lowe

  • 1. Climate services and early warning systems for infectious disease outbreaks Rachel Lowe Royal Society Dorothy Hodgkin Fellow London School of Hygiene & Tropical Medicine 24 October 2017, THET annual conference, London, UK
  • 2. Global framework for climate services (GFCS) 2 • Manage the risks of climate variability and change. • Transform climate information into relevant, usable decision-support tools. All these sectors have a big impact on our health!
  • 3. Climate services for health • Partnership • Research • Product development & delivery • Evaluation • Capacity building • Co-developed by health and climate professionals. 3 Lowe et al. Dengue EWS Lowe et al. Capacity Building
  • 4. From global observations to local interventions 4 The Economist
  • 5. Early warning and response systems • Early warning systems that account for multiple disease risk factors can help to implement timely control measures. • Seasonal climate forecasts provide an opportunity to anticipate epidemics several months in advance. 5
  • 6. Dengue in Brazil 6 • Model framework developed in collaboration with European-Brazilian climate and health institutions. • Data (dengue, climate, cartographic, demographic, socio-economic) to formulate model, produce probabilistic dengue predictions for >550 microregions. • Optimum trigger alert thresholds determined for scenarios of medium-risk and high-risk of dengue, according to incidence alert levels defined by the Ministry of Health.
  • 7. Lowe et al., 2014, Lancet Infect Dis Probabilistic dengue forecasts in Brazil 7 • Early warning framework applied to predict dengue risk for the World Cup in Brazil. • Category boundaries: 100 and 300 cases per 100,000 inhabitants.
  • 8. Probability of observing correct category 8 Low Medium High Lowe et al., 2016, eLife
  • 9. Comparison of forecast to null model 9 Comparison of hit rate and false alarm rate for forecast model (blue) and seasonal average null model (orange) for June 2000-2014. 2014 event hit rate: 57% (33%) false alarm rate (type I error rate): 23% (13%) miss rate (type II error rate): 43% (67%)Lowe et al., 2016, eLife
  • 10. El Niño and dengue in Ecuador 10 • El Niño a robust predictor of dengue outbreaks in El Oro province. • Seasonal climate forecasts more skillful during El Niño events. • Forecasts of temperature, rainfall and El Niño could provide dengue early warnings. Stewart-Ibarra & Lowe, 2013, AJTMH El Niño parameter estimate El Oro El Niño and rainfall association (JFM, 2 mon lag)
  • 11. 11 On February 26, 2016, over 170 mm of rain fell in 10 hours, and coincided with high tides, causing the worst flooding since the 1997-1998 El Niño.
  • 12. Climate and dengue associations 12 Cooler and drier than usual  less dengue Warmer and wetter than usual  more dengue Lowe et al., 2017 Lancet Planet Health Precipitation Temperature Ensemble climate forecasts (24 members) for precipitation and minimum temperature 2016, Ecuador DENGUE PRECIP MIN TEMP ENSO
  • 13. Current practice: average over last 5 years 13
  • 14. Climate-driven dengue forecast, Machala 2016 14 84% chance of exceeding threshold of 95% upper CI for previous five years Month log(dengueincidencerate) ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● 0246810 J F M A M J J A S O N ● ● ● Mean (2011−2015) Upper 95% CI (2011−2015) Predicted median 2016 95% prediction interval
  • 15. Peak occurred earlier than expected 15 Month log(dengueincidencerate) ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● 0246810 J F M A M J J A S O N ● ● ● ● Observed Mean (2011−2015) Upper 95% CI (2011−2015) Predicted median 2016 95% prediction interval Lowe et al., 2017 Lancet Planet Health Timing: climate forecasts Magnitude: correct misreporting
  • 16. Decision making scenarios 16 LATIN AMERICA QUEENSLAND MEDITERRANEAN UK • Scenario A: Manage simultaneous outbreaks in endemic settings (dengue, chikungunya, Zika, yellow fever). • Scenario B: Resist local transmission in disease free yet mosquito-infested areas (infected returned travellers, suitable climate). 16
  • 17. Thank you for your attention! Questions? rachel.lowe@lshtm.ac.uk @drrachellowe 17