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Spiggs in Space: evolution and biogeography of stickleback armor
across Vancouver Island, BC, Canada watersheds.
Anela Layugan ‘17, Zoe LaFrance-Armstrong ‘16, Meyru Bhanti ‘17, Jingzhu Hao ‘17, Kristen Sheldon ‘17, Meredith Houghton ‘17, Sam Most ‘17, Carly Johnson ‘17, Natalya Specian ’17
Sponsors: Rich King & John Baker, Department of Biology
Acknowledgments:	
   This	
   work	
   was	
   supported	
   in	
  
part	
  by	
  a	
  Na4onal	
  Geographic	
  grant	
  to	
  Dr.	
  Susan	
  
Foster.	
  We	
  also	
  wish	
  to	
  thank	
  the	
  BC	
  field	
  crew.	
  
Background
Our Approach
Adaptive radiations can offer unique insights into evolutionary processes,
enhancing our understanding of the ways in which diversification is initiated at the
onset of environmental change, as well as elucidating the processes by which the
evolution of new species occurs (King et al., 2016). One of the most promising
sources of insight is found in the post-glacial freshwater adaptive radiation of the
threespine stickleback fish, Gasterosteus aculeatus. However, many populations
are at risk of extinction through human-caused environmental change & species
introductions. Loss of novel diversity in sticklebacks limits, for example, our
understanding of the evolution & expression of genes important in skeletal
development in other vertebrates, including humans.
Ectodysplasin (Eda) and Paired-Like Homeodomain 1 (PitX1) are highly conserved
in vertebrates and are the major controlling loci for lateral plates and the pelvic
girdle in sticklebacks, respectively. These structures function together to form a box
around the fish, thus aiding in predator escape if captured (Reimchen, 1994).
Ancestral populations are generally fixed for complete lateral plate morphs and full
pelvic girdle expression (e.g., Bell & Foster, 1994) due to the large number of
piscivorous predators and high ion concentration in the ocean.
However, post-glacial, derived populations could experience both relaxed selection
from predators and selection against full expression of armor traits in the relatively
low-ion regime of freshwater lakes (Barrett et al., 2010). Additionally, a small
number of populations are polymorphic for plate (complete, partial, low; sensu Bell,
1976) and/or pelvic girdle expression either via fluctuating selection (Reimchen,
2000) or gene flow from nearby oceanic (i.e., anadromous) populations.
The natural hydrological regime and stream connectivity in many watersheds is
altered for anthropocentric benefit, often inhibiting movement of fish up or
downstream. Even though the design of modern dams and weirs considers
biological impacts, movement of small fish such as stickleback is restricted with
even the smallest of impediments (Raeymaekers et al., 2008). Moreover, many
lakes are stocked with non-native piscivorous species such as Rainbow & Cutthroat
Trout, changing the selection regime and thus leading to the loss of some low-
armor, stickleback populations (Baker et al., 2010).
Here we take advantage of the stickleback freshwater radiation & our
understanding of the ecological & genetic factors in body armor trait expression to
explore how gene flow, natural selection, & population loss shapes the geographic
distribution of body armor morphs in four watersheds on Vancouver Island, BC.
Discussion
Biogeography
Evolution
Learn More!
Data Acquisition
Principal Components Analysis
Correlation of ‘Armor Scores’
with lake chemistry & predators
Multiple Regression
Watershed Mapping
Population Collections
Nimpkish	
  River	
   Cowichan	
  River	
  
Comox	
  Valley	
  Campbell	
  River	
  
+/+	
  
+/-­‐	
  
-­‐/-­‐	
  
Gene	
  	
  
Flow	
  
Dis4nct,	
   but	
   very	
   closely-­‐linked	
   loci	
   regulate	
  
different	
   aspects	
   of	
   bony	
   armor	
   plates	
   in	
  
s4cklebacks.	
  Armor	
  plate	
  height	
  and	
  width	
  were	
  
separately	
   fine-­‐mapped	
   using	
   thousands	
   of	
   F2	
  
fish	
  from	
  a	
  gene4c	
  cross	
  between	
  a	
  large-­‐plated	
  
marine	
   s4ckleback	
   and	
   an	
   armor-­‐reduced	
  
freshwater	
   s4ckleback.	
   The	
   two	
   QTL	
   intervals	
  
(red	
   and	
   green	
   bars)	
   barely	
   overlap.	
   (from	
  
Indjeian	
  et	
  al.,	
  2016)	
  
Body	
   shape	
   is	
   a	
   set	
   of	
   correlated	
   gene4c	
   and	
  
environmentally	
  plas4c	
  traits.	
  Lake	
  depth,	
  habitat	
  
complexity	
   (i.e.,	
   vegeta4on),	
   food	
   sources	
   (i.e.,	
  
plankton	
   vs	
   benthos),	
   and	
   salinity	
   have	
   been	
  
linked	
  to	
  overall	
  body	
  shape	
  changes	
  resul4ng	
  in	
  
the	
   limne4c-­‐benthic	
   con4nuum	
   ubiquitous	
   in	
  
s4ckleback	
   shape	
   studies	
   (e.g.,	
   Bell	
   &	
   Foster,	
  
1994).	
   Our	
   data	
   suggests	
   that	
   maximum	
   body	
  
depth	
  and	
  ventral	
  body	
  width	
  may	
  also	
  be	
  linked	
  
to	
  selecDon	
  on	
  skeletal	
  armor	
  features.	
  
Lateral	
   plate	
   phenotype	
   is	
   largely	
  
controlled	
  by	
  EDAC	
  and	
  EDAL	
  alleles	
  with	
  a	
  
number	
   of	
   puta4ve	
   and	
   unknown	
  
enhancer	
  loci	
  (	
  e.g.,	
  see	
  ChrXX	
  to	
  the	
  leY).	
  
Here	
  we	
  assume	
  par4al	
  dominance	
  of	
  the	
  
EDAC	
   allele	
   for	
   lateral	
   plate	
   morph	
   (i.e.,	
  
complete,	
  par4al,	
  low)	
  expression.	
  	
  	
  
Contrary to expectations, neither predator regime, lake size, nor tannins
explained variation in armor traits in our data. Reimchen (2013) found in nearby
Haida Gwaii populations that fish predators tended to account for more robust
armor phenotypes, but that this was modified by an interaction between lake
size and water color (i.e., tannins). This same study did not find a correlation
between armor and ions while Bell (2000) and Smith et al., (2014) both found
significant correlations, though in opposite directions.
We found that armor was negatively correlated with ion concentration in
freshwater populations, a counterintuitive outcome. Ions in general, and Ca++
availability specifically should allow for greater boney armor development.
However, predators could drive armor defense traits primarily, and if ions are
limited then a trade-off with other traits would be expected. In low pH lakes
(such as most within our study area) Ca++ is limited and armor incurs a greater
energetic investment as ions decrease in availability. This may play out as a
cost to growth and/or reproduction that we did not consider in the current study.
Nevertheless, it remains unclear why a negative correlation between armor and
ions exists in our study or in Bell’s (2000) study of Alaskan populations.
Perhaps the most interesting pattern we’ve uncovered is seen simply in the
biogeographic distribution of plate morphs and in the variation across
watersheds and putative ancestral (oceanic) stocks. Plate polymorphisms exist
in oceanic populations around Vancouver Island, but appear to be restricted to
lower salinity Georgia Strait and Strait of Juan de Fuca populations (see map
immediately below). The possibility of significant genetic variation in founding
stocks at the watershed scale is intriguing and has not been widely considered.
Freshwater populations are adapted to local conditions as is commonly
described for post-glacial stickleback (e.g., Bell & Foster, 1994). Although,
watershed-level phenomena can limit adaptation, a fact not typically considered
in most studies. In our watersheds, gene flow is widely variant with, for example,
Nimpkish watershed exhibiting upstream gene flow but not downstream, and
Campbell watershed showing only downstream gene flow due to a dam
precluding upstream movement. In Nimpkish lakes, high levels gene flow
maintains a plate polymorphism even though local selection likely acts against
high plate morphs. In Campbell River lakes, upstream migration is halted by the
John Hart Lake Dam, thus upstream populations have become fixed for low
plate morph, but in this watershed introduced predators, cutthroat and rainbow
trout, may have played a role in the loss of some low-armor populations.
Projected	
  Coordinate	
  System:	
  NAD83	
  Environment	
  BC	
  Albers.	
  Data	
  Sources:	
  Bri4sh	
  Columbia	
  Ministry	
  of	
  Energy,	
  Mines	
  and	
  Petroleum	
  Resources;	
  Bri4sh	
  Columbia	
  Ministry	
  of	
  
Environment;	
  GeoGra4s.	
  Contains	
  informa4on	
  licensed	
  under	
  the	
  Open	
  Government	
  License	
  –	
  Canada.	
  Maps	
  created	
  by	
  A.	
  Layugan.	
  Scale	
  bars	
  for	
  each	
  watershed	
  ~25km.	
  
!(
!(
!( !(
!(
!(
!(
!(
!(
!(
!(
!(
!(
!(
*	
  
*	
  
*	
  
!(
!(
!(
!(
!(
!(
!(
!(
!(
Three-­‐dimensional	
  plots	
  showing	
  PC1-­‐PC1,	
  Armor	
  Box,	
  Body	
  Shape,	
  and	
  Lateral	
  Plates	
  respec4vely	
  by	
  watershed.	
  Red	
  are	
  for	
  the	
  oceanic	
  popula4ons	
  and	
  blue	
  is	
  the	
  freshwater	
  
popula4ons.	
  All	
  axes	
  are	
  ploged	
  on	
  the	
  same	
  scale	
  but	
  separately	
  by	
  watershed	
  for	
  clarity.	
  Note	
  that	
  the	
  oceanic	
  types	
  reside	
  in	
  different	
  3D	
  ‘Armor	
  Space’,	
  an	
  important	
  point	
  for	
  
inferring	
  direc4on	
  of	
  evolu4onary	
  change	
  in	
  this	
  system.	
  
Nimpkish	
  River	
   Cowichan	
  River	
   Comox	
  Valley	
  Campbell	
  River	
  

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Stickleback evolution across Vancouver Island watersheds

  • 1. Spiggs in Space: evolution and biogeography of stickleback armor across Vancouver Island, BC, Canada watersheds. Anela Layugan ‘17, Zoe LaFrance-Armstrong ‘16, Meyru Bhanti ‘17, Jingzhu Hao ‘17, Kristen Sheldon ‘17, Meredith Houghton ‘17, Sam Most ‘17, Carly Johnson ‘17, Natalya Specian ’17 Sponsors: Rich King & John Baker, Department of Biology Acknowledgments:   This   work   was   supported   in   part  by  a  Na4onal  Geographic  grant  to  Dr.  Susan   Foster.  We  also  wish  to  thank  the  BC  field  crew.   Background Our Approach Adaptive radiations can offer unique insights into evolutionary processes, enhancing our understanding of the ways in which diversification is initiated at the onset of environmental change, as well as elucidating the processes by which the evolution of new species occurs (King et al., 2016). One of the most promising sources of insight is found in the post-glacial freshwater adaptive radiation of the threespine stickleback fish, Gasterosteus aculeatus. However, many populations are at risk of extinction through human-caused environmental change & species introductions. Loss of novel diversity in sticklebacks limits, for example, our understanding of the evolution & expression of genes important in skeletal development in other vertebrates, including humans. Ectodysplasin (Eda) and Paired-Like Homeodomain 1 (PitX1) are highly conserved in vertebrates and are the major controlling loci for lateral plates and the pelvic girdle in sticklebacks, respectively. These structures function together to form a box around the fish, thus aiding in predator escape if captured (Reimchen, 1994). Ancestral populations are generally fixed for complete lateral plate morphs and full pelvic girdle expression (e.g., Bell & Foster, 1994) due to the large number of piscivorous predators and high ion concentration in the ocean. However, post-glacial, derived populations could experience both relaxed selection from predators and selection against full expression of armor traits in the relatively low-ion regime of freshwater lakes (Barrett et al., 2010). Additionally, a small number of populations are polymorphic for plate (complete, partial, low; sensu Bell, 1976) and/or pelvic girdle expression either via fluctuating selection (Reimchen, 2000) or gene flow from nearby oceanic (i.e., anadromous) populations. The natural hydrological regime and stream connectivity in many watersheds is altered for anthropocentric benefit, often inhibiting movement of fish up or downstream. Even though the design of modern dams and weirs considers biological impacts, movement of small fish such as stickleback is restricted with even the smallest of impediments (Raeymaekers et al., 2008). Moreover, many lakes are stocked with non-native piscivorous species such as Rainbow & Cutthroat Trout, changing the selection regime and thus leading to the loss of some low- armor, stickleback populations (Baker et al., 2010). Here we take advantage of the stickleback freshwater radiation & our understanding of the ecological & genetic factors in body armor trait expression to explore how gene flow, natural selection, & population loss shapes the geographic distribution of body armor morphs in four watersheds on Vancouver Island, BC. Discussion Biogeography Evolution Learn More! Data Acquisition Principal Components Analysis Correlation of ‘Armor Scores’ with lake chemistry & predators Multiple Regression Watershed Mapping Population Collections Nimpkish  River   Cowichan  River   Comox  Valley  Campbell  River   +/+   +/-­‐   -­‐/-­‐   Gene     Flow   Dis4nct,   but   very   closely-­‐linked   loci   regulate   different   aspects   of   bony   armor   plates   in   s4cklebacks.  Armor  plate  height  and  width  were   separately   fine-­‐mapped   using   thousands   of   F2   fish  from  a  gene4c  cross  between  a  large-­‐plated   marine   s4ckleback   and   an   armor-­‐reduced   freshwater   s4ckleback.   The   two   QTL   intervals   (red   and   green   bars)   barely   overlap.   (from   Indjeian  et  al.,  2016)   Body   shape   is   a   set   of   correlated   gene4c   and   environmentally  plas4c  traits.  Lake  depth,  habitat   complexity   (i.e.,   vegeta4on),   food   sources   (i.e.,   plankton   vs   benthos),   and   salinity   have   been   linked  to  overall  body  shape  changes  resul4ng  in   the   limne4c-­‐benthic   con4nuum   ubiquitous   in   s4ckleback   shape   studies   (e.g.,   Bell   &   Foster,   1994).   Our   data   suggests   that   maximum   body   depth  and  ventral  body  width  may  also  be  linked   to  selecDon  on  skeletal  armor  features.   Lateral   plate   phenotype   is   largely   controlled  by  EDAC  and  EDAL  alleles  with  a   number   of   puta4ve   and   unknown   enhancer  loci  (  e.g.,  see  ChrXX  to  the  leY).   Here  we  assume  par4al  dominance  of  the   EDAC   allele   for   lateral   plate   morph   (i.e.,   complete,  par4al,  low)  expression.       Contrary to expectations, neither predator regime, lake size, nor tannins explained variation in armor traits in our data. Reimchen (2013) found in nearby Haida Gwaii populations that fish predators tended to account for more robust armor phenotypes, but that this was modified by an interaction between lake size and water color (i.e., tannins). This same study did not find a correlation between armor and ions while Bell (2000) and Smith et al., (2014) both found significant correlations, though in opposite directions. We found that armor was negatively correlated with ion concentration in freshwater populations, a counterintuitive outcome. Ions in general, and Ca++ availability specifically should allow for greater boney armor development. However, predators could drive armor defense traits primarily, and if ions are limited then a trade-off with other traits would be expected. In low pH lakes (such as most within our study area) Ca++ is limited and armor incurs a greater energetic investment as ions decrease in availability. This may play out as a cost to growth and/or reproduction that we did not consider in the current study. Nevertheless, it remains unclear why a negative correlation between armor and ions exists in our study or in Bell’s (2000) study of Alaskan populations. Perhaps the most interesting pattern we’ve uncovered is seen simply in the biogeographic distribution of plate morphs and in the variation across watersheds and putative ancestral (oceanic) stocks. Plate polymorphisms exist in oceanic populations around Vancouver Island, but appear to be restricted to lower salinity Georgia Strait and Strait of Juan de Fuca populations (see map immediately below). The possibility of significant genetic variation in founding stocks at the watershed scale is intriguing and has not been widely considered. Freshwater populations are adapted to local conditions as is commonly described for post-glacial stickleback (e.g., Bell & Foster, 1994). Although, watershed-level phenomena can limit adaptation, a fact not typically considered in most studies. In our watersheds, gene flow is widely variant with, for example, Nimpkish watershed exhibiting upstream gene flow but not downstream, and Campbell watershed showing only downstream gene flow due to a dam precluding upstream movement. In Nimpkish lakes, high levels gene flow maintains a plate polymorphism even though local selection likely acts against high plate morphs. In Campbell River lakes, upstream migration is halted by the John Hart Lake Dam, thus upstream populations have become fixed for low plate morph, but in this watershed introduced predators, cutthroat and rainbow trout, may have played a role in the loss of some low-armor populations. Projected  Coordinate  System:  NAD83  Environment  BC  Albers.  Data  Sources:  Bri4sh  Columbia  Ministry  of  Energy,  Mines  and  Petroleum  Resources;  Bri4sh  Columbia  Ministry  of   Environment;  GeoGra4s.  Contains  informa4on  licensed  under  the  Open  Government  License  –  Canada.  Maps  created  by  A.  Layugan.  Scale  bars  for  each  watershed  ~25km.   !( !( !( !( !( !( !( !( !( !( !( !( !( !( *   *   *   !( !( !( !( !( !( !( !( !( Three-­‐dimensional  plots  showing  PC1-­‐PC1,  Armor  Box,  Body  Shape,  and  Lateral  Plates  respec4vely  by  watershed.  Red  are  for  the  oceanic  popula4ons  and  blue  is  the  freshwater   popula4ons.  All  axes  are  ploged  on  the  same  scale  but  separately  by  watershed  for  clarity.  Note  that  the  oceanic  types  reside  in  different  3D  ‘Armor  Space’,  an  important  point  for   inferring  direc4on  of  evolu4onary  change  in  this  system.   Nimpkish  River   Cowichan  River   Comox  Valley  Campbell  River