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Data Mining:
Concepts and Techniques
— Chapter 2 —
Jiawei Han, Micheline Kamber, and Jian Pei
University of Illinois at Urbana-Champaign
Simon Fraser University
©2013 Han, Kamber, and Pei. All rights reserved.
August 14, 2014 Data Mining: Concepts and Techniques 2
3
Chapter 2: Getting to Know Your Data
 Data Objects and Attribute Types
 Basic Statistical Descriptions of Data
 Data Visualization
 Measuring Data Similarity and Dissimilarity
 Summary
4
Types of Data Sets
 Record
 Relational records
 Data matrix, e.g., numerical matrix,
crosstabs
 Document data: text documents: term-
frequency vector
 Transaction data
 Graph and network
 World Wide Web
 Social or information networks
 Molecular Structures
 Ordered
 Video data: sequence of images
 Temporal data: time-series
 Sequential Data: transaction sequences
 Genetic sequence data
 Spatial, image and multimedia:
 Spatial data: maps
 Image data:
 Video data:
TID Items
1 Bread, Coke, Milk
2 Beer, Bread
3 Beer, Coke, Diaper, Milk
4 Beer, Bread, Diaper, Milk
5 Coke, Diaper, Milk
5
Important Characteristics of Structured Data
 Dimensionality
 Curse of dimensionality
 Sparsity
 Only presence counts
 Resolution

Patterns depend on the scale
 Distribution
 Centrality and dispersion
6
Data Objects
 Data sets are made up of data objects.
 A data object represents an entity.
 Examples:
 sales database: customers, store items, sales
 medical database: patients, treatments
 university database: students, professors, courses
 Also called samples , examples, instances, data points, objects,
tuples.
 Data objects are described by attributes.
 Database rows -> data objects; columns ->attributes.
7
Attributes
 Attribute (or dimensions, features, variables): a data
field, representing a characteristic or feature of a data
object.
 E.g., customer _ID, name, address
 Types:
 Nominal
 Binary
 Numeric: quantitative

Interval-scaled

Ratio-scaled
8
Attribute Types
 Nominal: categories, states, or “names of things”
 Hair_color = {auburn, black, blond, brown, grey, red, white}
 marital status, occupation, ID numbers, zip codes
 Binary
 Nominal attribute with only 2 states (0 and 1)
 Symmetric binary: both outcomes equally important

e.g., gender
 Asymmetric binary: outcomes not equally important.

e.g., medical test (positive vs. negative)

Convention: assign 1 to most important outcome (e.g., HIV
positive)
 Ordinal
 Values have a meaningful order (ranking) but magnitude between
successive values is not known.
 Size = {small, medium, large}, grades, army rankings
9
Numeric Attribute Types
 Quantity (integer or real-valued)
 Interval

Measured on a scale of equal-sized units

Values have order
 E.g., temperature in C˚or F˚, calendar dates

No true zero-point
 Ratio

Inherent zero-point

We can speak of values as being an order of magnitude
larger than the unit of measurement (10 K˚ is twice as
high as 5 K˚).
 e.g., temperature in Kelvin, length, counts,
monetary quantities
10
Discrete vs. Continuous Attributes
 Discrete Attribute
 Has only a finite or countably infinite set of values

E.g., zip codes, profession, or the set of words in a
collection of documents
 Sometimes, represented as integer variables
 Note: Binary attributes are a special case of discrete
attributes
 Continuous Attribute
 Has real numbers as attribute values

E.g., temperature, height, or weight
 Practically, real values can only be measured and
represented using a finite number of digits
 Continuous attributes are typically represented as floating-
point variables
11
Chapter 2: Getting to Know Your Data
 Data Objects and Attribute Types
 Basic Statistical Descriptions of Data
 Data Visualization
 Measuring Data Similarity and Dissimilarity
 Summary
12
Basic Statistical Descriptions of Data
 Motivation
 To better understand the data: central tendency, variation
and spread
 Data dispersion characteristics
 median, max, min, quantiles, outliers, variance, etc.
 Numerical dimensions correspond to sorted intervals
 Data dispersion: analyzed with multiple granularities of
precision
 Boxplot or quantile analysis on sorted intervals
 Dispersion analysis on computed measures
 Folding measures into numerical dimensions
 Boxplot or quantile analysis on the transformed cube
13
Measuring the Central Tendency
 Mean (algebraic measure) (sample vs. population):
Note: n is sample size and N is population size.
 Weighted arithmetic mean:
 Trimmed mean: chopping extreme values
 Median:
 Middle value if odd number of values, or average of the
middle two values otherwise
 Estimated by interpolation (for grouped data):
 Mode
 Value that occurs most frequently in the data
 Unimodal, bimodal, trimodal
 Empirical formula:
∑=
=
n
i
ix
n
x
1
1
∑
∑
=
=
= n
i
i
n
i
ii
w
xw
x
1
1
width
freq
freqn
Lmedian
median
l
)
)(2/
(1
∑−
+=
)(3 medianmeanmodemean −×=−
N
x∑=µ
Median
interval
August 14, 2014 Data Mining: Concepts and Techniques 14
Symmetric vs. Skewed Data
 Median, mean and mode of
symmetric, positively and negatively
skewed data
positively skewed negatively skewed
symmetric
15
Measuring the Dispersion of Data
 Quartiles, outliers and boxplots
 Quartiles: Q1 (25th
percentile), Q3 (75th
percentile)
 Inter-quartile range: IQR = Q3–Q1
 Five number summary: min, Q1, median,Q3, max
 Boxplot: ends of the box are the quartiles; median is marked; add whiskers,
and plot outliers individually
 Outlier: usually, a value higher/lower than 1.5 x IQR
 Variance and standard deviation (sample: s, population: σ)
 Variance: (algebraic, scalable computation)
 Standard deviation s (or σ) is the square root of variance s2(
orσ2)
∑ ∑∑ = ==
−
−
=−
−
=
n
i
n
i
ii
n
i
i x
n
x
n
xx
n
s
1 1
22
1
22
])(
1
[
1
1
)(
1
1
∑∑ ==
−=−=
n
i
i
n
i
i x
N
x
N 1
22
1
22 1
)(
1
µµσ
16
Boxplot Analysis
 Five-number summary of a distribution
 Minimum, Q1, Median, Q3, Maximum
 Boxplot
 Data is represented with a box
 The ends of the box are at the first and third
quartiles, i.e., the height of the box is IQR
 The median is marked by a line within the box
 Whiskers: two lines outside the box extended
to Minimum and Maximum
 Outliers: points beyond a specified outlier
threshold, plotted individually
August 14, 2014 Data Mining: Concepts and Techniques 17
Visualization of Data Dispersion: 3-D Boxplots
18
Properties of Normal Distribution Curve
 The normal (distribution) curve
 From μ–σ to μ+σ: contains about 68% of the measurements
(μ: mean, σ: standard deviation)
 From μ–2σ to μ+2σ: contains about 95% of it
 From μ–3σ to μ+3σ: contains about 99.7% of it
19
Graphic Displays of Basic Statistical Descriptions
 Boxplot: graphic display of five-number summary
 Histogram: x-axis are values, y-axis repres. frequencies
 Quantile plot: each value xi is paired with fi indicating that
approximately 100 fi% of data are ≤ xi
 Quantile-quantile (q-q) plot: graphs the quantiles of one
univariant distribution against the corresponding quantiles of
another
 Scatter plot: each pair of values is a pair of coordinates and
plotted as points in the plane
20
Histogram Analysis
 Histogram: Graph display of tabulated
frequencies, shown as bars
 It shows what proportion of cases fall
into each of several categories
 Differs from a bar chart in that it is
the area of the bar that denotes the
value, not the height as in bar charts,
a crucial distinction when the
categories are not of uniform width
 The categories are usually specified as
non-overlapping intervals of some
variable. The categories (bars) must
be adjacent
0
5
10
15
20
25
30
35
40
10000 30000 50000 70000 90000
21
Histograms Often Tell More than Boxplots
 The two histograms
shown in the left may
have the same boxplot
representation
 The same values for:
min, Q1, median, Q3,
max
 But they have rather
different data
distributions
Data Mining: Concepts and Techniques 22
Quantile Plot
 Displays all of the data (allowing the user to assess both the
overall behavior and unusual occurrences)
 Plots quantile information
 For a data xi data sorted in increasing order, fi indicates that
approximately 100 fi% of the data are below or equal to the
value xi
23
Quantile-Quantile (Q-Q) Plot
 Graphs the quantiles of one univariate distribution against the
corresponding quantiles of another
 View: Is there is a shift in going from one distribution to another?
 Example shows unit price of items sold at Branch 1 vs. Branch 2 for
each quantile. Unit prices of items sold at Branch 1 tend to be lower
than those at Branch 2.
24
Scatter plot
 Provides a first look at bivariate data to see clusters of points,
outliers, etc
 Each pair of values is treated as a pair of coordinates and
plotted as points in the plane
25
Positively and Negatively Correlated Data
 The left half fragment is positively
correlated
 The right half is negative correlated
26
Uncorrelated Data
27
Chapter 2: Getting to Know Your Data
 Data Objects and Attribute Types
 Basic Statistical Descriptions of Data
 Data Visualization
 Measuring Data Similarity and Dissimilarity
 Summary
28
Data Visualization
 Why data visualization?
 Gain insight into an information space by mapping data onto graphical
primitives
 Provide qualitative overview of large data sets
 Search for patterns, trends, structure, irregularities, relationships among
data
 Help find interesting regions and suitable parameters for further
quantitative analysis
 Provide a visual proof of computer representations derived
 Categorization of visualization methods:
 Pixel-oriented visualization techniques
 Geometric projection visualization techniques
 Icon-based visualization techniques
 Hierarchical visualization techniques
 Visualizing complex data and relations
29
Pixel-Oriented Visualization Techniques
 For a data set of m dimensions, create m windows on the screen, one
for each dimension
 The m dimension values of a record are mapped to m pixels at the
corresponding positions in the windows
 The colors of the pixels reflect the corresponding values
(a) Income (b) Credit Limit (c) transaction volume (d) age
30
Laying Out Pixels in Circle Segments
 To save space and show the connections among multiple dimensions,
space filling is often done in a circle segment
(a) Representing a data record
in circle segment
(b) Laying out pixels in circle segment
Representing about 265,000 50-dimensional Data Items
with the ‘Circle Segments’ Technique
31
Geometric Projection Visualization Techniques
 Visualization of geometric transformations and projections of
the data
 Methods
 Direct visualization
 Scatterplot and scatterplot matrices
 Landscapes
 Projection pursuit technique: Help users find meaningful
projections of multidimensional data
 Prosection views
 Hyperslice
 Parallel coordinates
Data Mining: Concepts and Techniques 32
Direct Data VisualizationRibbonswithTwistsBasedonVorticity
33
Scatterplot Matrices
Matrix of scatterplots (x-y-diagrams) of the k-dim. data [total of (k2/2-k) scatterplots]
UsedbyermissionofM.Ward,WorcesterPolytechnicInstitute
34
news articles
visualized as
a landscape
UsedbypermissionofB.Wright,VisibleDecisionsInc.
Landscapes
 Visualization of the data as perspective landscape
 The data needs to be transformed into a (possibly artificial) 2D spatial
representation which preserves the characteristics of the data
35
Attr. 1 Attr. 2 Attr. kAttr. 3
• • •
Parallel Coordinates
 n equidistant axes which are parallel to one of the screen axes and
correspond to the attributes
 The axes are scaled to the [minimum, maximum]: range of the
corresponding attribute
 Every data item corresponds to a polygonal line which intersects each of the
axes at the point which corresponds to the value for the attribute
36
Parallel Coordinates of a Data Set
37
Icon-Based Visualization Techniques
 Visualization of the data values as features of icons
 Typical visualization methods
 Chernoff Faces
 Stick Figures
 General techniques
 Shape coding: Use shape to represent certain information
encoding
 Color icons: Use color icons to encode more information
 Tile bars: Use small icons to represent the relevant feature
vectors in document retrieval
38
Chernoff Faces
 A way to display variables on a two-dimensional surface, e.g., let x be
eyebrow slant, y be eye size, z be nose length, etc.
 The figure shows faces produced using 10 characteristics--head eccentricity,
eye size, eye spacing, eye eccentricity, pupil size, eyebrow slant, nose size,
mouth shape, mouth size, and mouth opening): Each assigned one of 10
possible values, generated using Mathematica (S. Dickson)
 REFERENCE: Gonick, L. and Smith, W.
The Cartoon Guide to Statistics. New York:
Harper Perennial, p. 212, 1993
 Weisstein, Eric W. "Chernoff Face." From
MathWorld--A Wolfram Web Resource.
mathworld.wolfram.com/ChernoffFace.html
Data Mining: Concepts and Techniques 39
A census data
figure showing
age, income,
gender,
education, etc.
usedbypermissionofG.Grinstein,UniversityofMassachusettesatLowell
Stick Figure
A 5-piece stick
figure (1 body
and 4 limbs w.
different
angle/length)
40
Hierarchical Visualization Techniques
 Visualization of the data using a hierarchical
partitioning into subspaces
 Methods
 Dimensional Stacking
 Worlds-within-Worlds
 Tree-Map
 Cone Trees
 InfoCube
41
Dimensional Stacking
 Partitioning of the n-dimensional attribute space in 2-D
subspaces, which are ‘stacked’ into each other
 Partitioning of the attribute value ranges into classes. The
important attributes should be used on the outer levels.
 Adequate for data with ordinal attributes of low cardinality
 But, difficult to display more than nine dimensions
 Important to map dimensions appropriately
42
Used by permission of M. Ward, Worcester Polytechnic Institute
Visualization of oil mining data with longitude and latitude mapped to the
outer x-, y-axes and ore grade and depth mapped to the inner x-, y-axes
Dimensional Stacking
43
Worlds-within-Worlds
 Assign the function and two most important parameters to innermost
world
 Fix all other parameters at constant values - draw other (1 or 2 or 3
dimensional worlds choosing these as the axes)
 Software that uses this paradigm
 N–vision: Dynamic
interaction through data
glove and stereo displays,
including rotation, scaling
(inner) and translation
(inner/outer)
 Auto Visual: Static
interaction by means of
queries
44
Tree-Map
 Screen-filling method which uses a hierarchical partitioning of
the screen into regions depending on the attribute values
 The x- and y-dimension of the screen are partitioned alternately
according to the attribute values (classes)
Schneiderman@UMD: Tree-Map of a File System Schneiderman@UMD: Tree-Map to support
large data sets of a million items
45
InfoCube
 A 3-D visualization technique where hierarchical
information is displayed as nested semi-transparent
cubes
 The outermost cubes correspond to the top level data,
while the subnodes or the lower level data are
represented as smaller cubes inside the outermost
cubes, and so on
46
Three-D Cone Trees
 3D cone tree visualization technique works
well for up to a thousand nodes or so
 First build a 2D circle tree that arranges its
nodes in concentric circles centered on the
root node
 Cannot avoid overlaps when projected to 2D
 G. Robertson, J. Mackinlay, S. Card. “Cone
Trees: Animated 3D Visualizations of
Hierarchical Information”, ACM SIGCHI'91
 Graph from Nadeau Software Consulting
website: Visualize a social network data set
that models the way an infection spreads from
one person to the next
Visualizing Complex Data and Relations
 Visualizing non-numerical data: text and social networks
 Tag cloud: visualizing user-generated tags
 The importance of tag is
represented by font
size/color
 Besides text data, there are
also methods to visualize
relationships, such as
visualizing social networks
Newsmap: Google News Stories in 2005
48
Chapter 2: Getting to Know Your Data
 Data Objects and Attribute Types
 Basic Statistical Descriptions of Data
 Data Visualization
 Measuring Data Similarity and Dissimilarity
 Summary
49
Similarity and Dissimilarity
 Similarity
 Numerical measure of how alike two data objects are
 Value is higher when objects are more alike
 Often falls in the range [0,1]
 Dissimilarity (e.g., distance)
 Numerical measure of how different two data objects are
 Lower when objects are more alike
 Minimum dissimilarity is often 0
 Upper limit varies
 Proximity refers to a similarity or dissimilarity
50
Data Matrix and Dissimilarity Matrix
 Data matrix
 n data points with p
dimensions
 Two modes
 Dissimilarity matrix
 n data points, but
registers only the
distance
 A triangular matrix
 Single mode


















npx...nfx...n1x
...............
ipx...ifx...i1x
...............
1px...1fx...11x
















0...)2,()1,(
:::
)2,3()
...ndnd
0dd(3,1
0d(2,1)
0
51
Proximity Measure for Nominal Attributes
 Can take 2 or more states, e.g., red, yellow, blue,
green (generalization of a binary attribute)
 Method 1: Simple matching
 m: # of matches, p: total # of variables
 Method 2: Use a large number of binary attributes
 creating a new binary attribute for each of the M
nominal states
p
mpjid −=),(
52
Proximity Measure for Binary Attributes
 A contingency table for binary data
 Distance measure for symmetric
binary variables:
 Distance measure for asymmetric
binary variables:
 Jaccard coefficient (similarity
measure for asymmetric binary
variables):
 Note: Jaccard coefficient is the same as “coherence”:
Object i
Object j
53
Dissimilarity between Binary Variables
 Example
 Gender is a symmetric attribute
 The remaining attributes are asymmetric binary
 Let the values Y and P be 1, and the value N 0
Name Gender Fever Cough Test-1 Test-2 Test-3 Test-4
Jack M Y N P N N N
Mary F Y N P N P N
Jim M Y P N N N N
75.0
211
21
),(
67.0
111
11
),(
33.0
102
10
),(
=
++
+
=
=
++
+
=
=
++
+
=
maryjimd
jimjackd
maryjackd
54
Standardizing Numeric Data
 Z-score:
 X: raw score to be standardized, μ: mean of the population, σ: standard
deviation
 the distance between the raw score and the population mean in units
of the standard deviation
 negative when the raw score is below the mean, “+” when above
 An alternative way: Calculate the mean absolute deviation
where
 standardized measure (z-score):
 Using mean absolute deviation is more robust than using standard
deviation
.)...
21
1
nffff
xx(xnm +++=
|)|...|||(|1
21 fnffffff
mxmxmxns −++−+−=
f
fif
if s
mx
z
−
=
σ
µ−= xz
55
Example:
Data Matrix and Dissimilarity Matrix
point attribute1 attribute2
x1 1 2
x2 3 5
x3 2 0
x4 4 5
Dissimilarity Matrix
(with Euclidean Distance)
x1 x2 x3 x4
x1 0
x2 3.61 0
x3 2.24 5.1 0
x4 4.24 1 5.39 0
Data Matrix
56
Distance on Numeric Data: Minkowski Distance
 Minkowski distance: A popular distance measure
where i = (xi1, xi2, …, xip) and j = (xj1, xj2, …, xjp) are two p-
dimensional data objects, and h is the order (the distance
so defined is also called L-h norm)
 Properties
 d(i, j) > 0 if i ≠ j, and d(i, i) = 0 (Positive definiteness)
 d(i, j) = d(j, i) (Symmetry)
 d(i, j) ≤ d(i, k) + d(k, j) (Triangle Inequality)
 A distance that satisfies these properties is a metric
57
Special Cases of Minkowski Distance
 h = 1: Manhattan (city block, L1
norm) distance
 E.g., the Hamming distance: the number of bits that are different
between two binary vectors
 h = 2: (L2 norm) Euclidean distance
 h → ∞. “supremum” (Lmax
norm, L∞
norm) distance.
 This is the maximum difference between any component (attribute)
of the vectors
)||...|||(|),( 22
22
2
11 pp j
x
i
x
j
x
i
x
j
x
i
xjid −++−+−=
||...||||),(
2211 pp j
x
i
x
j
x
i
x
j
x
i
xjid −++−+−=
58
Example: Minkowski Distance
Dissimilarity Matrices
point attribute 1 attribute 2
x1 1 2
x2 3 5
x3 2 0
x4 4 5
L x1 x2 x3 x4
x1 0
x2 5 0
x3 3 6 0
x4 6 1 7 0
L2 x1 x2 x3 x4
x1 0
x2 3.61 0
x3 2.24 5.1 0
x4 4.24 1 5.39 0
L∞ x1 x2 x3 x4
x1 0
x2 3 0
x3 2 5 0
x4 3 1 5 0
Manhattan (L1)
Euclidean (L2)
Supremum
59
Ordinal Variables
 An ordinal variable can be discrete or continuous
 Order is important, e.g., rank
 Can be treated like interval-scaled
 replace xif by their rank
 map the range of each variable onto [0, 1] by replacing i-th
object in the f-th variable by
 compute the dissimilarity using methods for interval-scaled
variables
1
1
−
−
=
f
if
if M
r
z
},...,1{ fif
Mr ∈
60
Attributes of Mixed Type
 A database may contain all attribute types
 Nominal, symmetric binary, asymmetric binary, numeric,
ordinal
 One may use a weighted formula to combine their effects
 f is binary or nominal:
dij
(f)
= 0 if xif= xjf , or dij
(f)
= 1 otherwise
 f is numeric: use the normalized distance
 f is ordinal
 Compute ranks rif and
 Treat zif as interval-scaled
)(
1
)()(
1
),( f
ij
p
f
f
ij
f
ij
p
f
d
jid
δ
δ
=
=
Σ
Σ
=
1
1
−
−
=
f
if
M
rzif
61
Cosine Similarity
 A document can be represented by thousands of attributes, each recording the
frequency of a particular word (such as keywords) or phrase in the document.
 Other vector objects: gene features in micro-arrays, …
 Applications: information retrieval, biologic taxonomy, gene feature
mapping, ...
 Cosine measure: If d1
and d2
are two vectors (e.g., term-frequency vectors),
then
cos(d1
, d2
) = (d1
• d2
) /||d1
|| ||d2
|| ,
where • indicates vector dot product, ||d||: the length of vector d
62
Example: Cosine Similarity
 cos(d1
, d2
) = (d1
• d2
) /||d1
|| ||d2
|| ,
where • indicates vector dot product, ||d|: the length of vector d
 Ex: Find the similarity between documents 1 and 2.
d1
= (5, 0, 3, 0, 2, 0, 0, 2, 0, 0)
d2
= (3, 0, 2, 0, 1, 1, 0, 1, 0, 1)
d1
•d2
= 5*3+0*0+3*2+0*0+2*1+0*1+0*1+2*1+0*0+0*1 = 25
||d1
||= (5*5+0*0+3*3+0*0+2*2+0*0+0*0+2*2+0*0+0*0)0.5
=(42)0.5
= 6.481
||d2
||= (3*3+0*0+2*2+0*0+1*1+1*1+0*0+1*1+0*0+1*1)0.5
=(17)0.5
= 4.12
cos(d1
, d2
) = 0.94
63
KL Divergence: Comparing Two
Probability Distributions
 The Kullback-Leibler (KL) divergence: Measure the difference between two
probability distributions over the same variable x
 From information theory, closely related to relative entropy, information
divergence, and information for discrimination
 DKL(p(x) || q(x)): divergence of q(x) from p(x), measuring the information lost
when q(x) is used to approximate p(x)
 Discrete form:
 The KL divergence measures the expected number of extra bits required to
code samples from p(x) (“true” distribution) when using a code based on q(x),
which represents a theory, model, description, or approximation of p(x)
 Its continuous form:
 The KL divergence: not a distance measure, not a metric: asymmetric, not
satisfy triangular inequality
64
How to Compute the
KL Divergence?
 Base on the formula, DKL(P,Q) ≥ 0 and DKL(P || Q) = 0 if and only if P = Q.
 How about when p = 0 or q = 0?
 limp→0 p log p = 0
 when p != 0 but q = 0, DKL(p || q) is defined as ∞, i.e., if one event e is
possible (i.e., p(e) > 0), and the other predicts it is absolutely impossible
(i.e., q(e) = 0), then the two distributions are absolutely different
 However, in practice, P and Q are derived from frequency distributions, not
counting the possibility of unseen events. Thus smoothing is needed
 Example: P : (a : 3/5, b : 1/5, c : 1/5). Q : (a : 5/9, b : 3/9, d : 1/9)
 need to introduce a small constant ϵ, e.g., ϵ = 10−3
 The sample set observed in P, SP = {a, b, c}, SQ = {a, b, d}, SU = {a, b, c, d}
 Smoothing, add missing symbols to each distribution, with probability ϵ
 P′ : (a : 3/5 − /ϵ 3, b : 1/5 − /ϵ 3, c : 1/5 − /ϵ 3, d : ϵ)
 Q′ : (a : 5/9 − /ϵ 3, b : 3/9 − /ϵ 3, c : , dϵ : 1/9 − /ϵ 3).
 DKL(P’ || Q’) can be computed easily
65
Chapter 2: Getting to Know Your Data
 Data Objects and Attribute Types
 Basic Statistical Descriptions of Data
 Data Visualization
 Measuring Data Similarity and Dissimilarity
 Summary
Summary
 Data attribute types: nominal, binary, ordinal, interval-scaled,
ratio-scaled
 Many types of data sets, e.g., numerical, text, graph, Web,
image.
 Gain insight into the data by:
 Basic statistical data description: central tendency,
dispersion, graphical displays
 Data visualization: map data onto graphical primitives
 Measure data similarity
 Above steps are the beginning of data preprocessing
 Many methods have been developed but still an active area of
research
References
 W. Cleveland, Visualizing Data, Hobart Press, 1993
 T. Dasu and T. Johnson. Exploratory Data Mining and Data Cleaning. John Wiley, 2003
 U. Fayyad, G. Grinstein, and A. Wierse. Information Visualization in Data Mining and
Knowledge Discovery, Morgan Kaufmann, 2001
 L. Kaufman and P. J. Rousseeuw. Finding Groups in Data: an Introduction to Cluster
Analysis. John Wiley & Sons, 1990.
 H. V. Jagadish et al., Special Issue on Data Reduction Techniques. Bulletin of the Tech.
Committee on Data Eng., 20(4), Dec. 1997
 D. A. Keim. Information visualization and visual data mining, IEEE trans. on Visualization
and Computer Graphics, 8(1), 2002
 D. Pyle. Data Preparation for Data Mining. Morgan Kaufmann, 1999
 S. Santini and R. Jain,” Similarity measures”, IEEE Trans. on Pattern Analysis and
Machine Intelligence, 21(9), 1999
 E. R. Tufte. The Visual Display of Quantitative Information, 2nd
ed., Graphics Press, 2001
 C. Yu et al., Visual data mining of multimedia data for social and behavioral studies,
Information Visualization, 8(1), 2009
August 14, 2014 Data Mining: Concepts and Techniques 68

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Data Mining Chapter 2 Summary

  • 1. 1 Data Mining: Concepts and Techniques — Chapter 2 — Jiawei Han, Micheline Kamber, and Jian Pei University of Illinois at Urbana-Champaign Simon Fraser University ©2013 Han, Kamber, and Pei. All rights reserved.
  • 2. August 14, 2014 Data Mining: Concepts and Techniques 2
  • 3. 3 Chapter 2: Getting to Know Your Data  Data Objects and Attribute Types  Basic Statistical Descriptions of Data  Data Visualization  Measuring Data Similarity and Dissimilarity  Summary
  • 4. 4 Types of Data Sets  Record  Relational records  Data matrix, e.g., numerical matrix, crosstabs  Document data: text documents: term- frequency vector  Transaction data  Graph and network  World Wide Web  Social or information networks  Molecular Structures  Ordered  Video data: sequence of images  Temporal data: time-series  Sequential Data: transaction sequences  Genetic sequence data  Spatial, image and multimedia:  Spatial data: maps  Image data:  Video data: TID Items 1 Bread, Coke, Milk 2 Beer, Bread 3 Beer, Coke, Diaper, Milk 4 Beer, Bread, Diaper, Milk 5 Coke, Diaper, Milk
  • 5. 5 Important Characteristics of Structured Data  Dimensionality  Curse of dimensionality  Sparsity  Only presence counts  Resolution  Patterns depend on the scale  Distribution  Centrality and dispersion
  • 6. 6 Data Objects  Data sets are made up of data objects.  A data object represents an entity.  Examples:  sales database: customers, store items, sales  medical database: patients, treatments  university database: students, professors, courses  Also called samples , examples, instances, data points, objects, tuples.  Data objects are described by attributes.  Database rows -> data objects; columns ->attributes.
  • 7. 7 Attributes  Attribute (or dimensions, features, variables): a data field, representing a characteristic or feature of a data object.  E.g., customer _ID, name, address  Types:  Nominal  Binary  Numeric: quantitative  Interval-scaled  Ratio-scaled
  • 8. 8 Attribute Types  Nominal: categories, states, or “names of things”  Hair_color = {auburn, black, blond, brown, grey, red, white}  marital status, occupation, ID numbers, zip codes  Binary  Nominal attribute with only 2 states (0 and 1)  Symmetric binary: both outcomes equally important  e.g., gender  Asymmetric binary: outcomes not equally important.  e.g., medical test (positive vs. negative)  Convention: assign 1 to most important outcome (e.g., HIV positive)  Ordinal  Values have a meaningful order (ranking) but magnitude between successive values is not known.  Size = {small, medium, large}, grades, army rankings
  • 9. 9 Numeric Attribute Types  Quantity (integer or real-valued)  Interval  Measured on a scale of equal-sized units  Values have order  E.g., temperature in C˚or F˚, calendar dates  No true zero-point  Ratio  Inherent zero-point  We can speak of values as being an order of magnitude larger than the unit of measurement (10 K˚ is twice as high as 5 K˚).  e.g., temperature in Kelvin, length, counts, monetary quantities
  • 10. 10 Discrete vs. Continuous Attributes  Discrete Attribute  Has only a finite or countably infinite set of values  E.g., zip codes, profession, or the set of words in a collection of documents  Sometimes, represented as integer variables  Note: Binary attributes are a special case of discrete attributes  Continuous Attribute  Has real numbers as attribute values  E.g., temperature, height, or weight  Practically, real values can only be measured and represented using a finite number of digits  Continuous attributes are typically represented as floating- point variables
  • 11. 11 Chapter 2: Getting to Know Your Data  Data Objects and Attribute Types  Basic Statistical Descriptions of Data  Data Visualization  Measuring Data Similarity and Dissimilarity  Summary
  • 12. 12 Basic Statistical Descriptions of Data  Motivation  To better understand the data: central tendency, variation and spread  Data dispersion characteristics  median, max, min, quantiles, outliers, variance, etc.  Numerical dimensions correspond to sorted intervals  Data dispersion: analyzed with multiple granularities of precision  Boxplot or quantile analysis on sorted intervals  Dispersion analysis on computed measures  Folding measures into numerical dimensions  Boxplot or quantile analysis on the transformed cube
  • 13. 13 Measuring the Central Tendency  Mean (algebraic measure) (sample vs. population): Note: n is sample size and N is population size.  Weighted arithmetic mean:  Trimmed mean: chopping extreme values  Median:  Middle value if odd number of values, or average of the middle two values otherwise  Estimated by interpolation (for grouped data):  Mode  Value that occurs most frequently in the data  Unimodal, bimodal, trimodal  Empirical formula: ∑= = n i ix n x 1 1 ∑ ∑ = = = n i i n i ii w xw x 1 1 width freq freqn Lmedian median l ) )(2/ (1 ∑− += )(3 medianmeanmodemean −×=− N x∑=µ Median interval
  • 14. August 14, 2014 Data Mining: Concepts and Techniques 14 Symmetric vs. Skewed Data  Median, mean and mode of symmetric, positively and negatively skewed data positively skewed negatively skewed symmetric
  • 15. 15 Measuring the Dispersion of Data  Quartiles, outliers and boxplots  Quartiles: Q1 (25th percentile), Q3 (75th percentile)  Inter-quartile range: IQR = Q3–Q1  Five number summary: min, Q1, median,Q3, max  Boxplot: ends of the box are the quartiles; median is marked; add whiskers, and plot outliers individually  Outlier: usually, a value higher/lower than 1.5 x IQR  Variance and standard deviation (sample: s, population: σ)  Variance: (algebraic, scalable computation)  Standard deviation s (or σ) is the square root of variance s2( orσ2) ∑ ∑∑ = == − − =− − = n i n i ii n i i x n x n xx n s 1 1 22 1 22 ])( 1 [ 1 1 )( 1 1 ∑∑ == −=−= n i i n i i x N x N 1 22 1 22 1 )( 1 µµσ
  • 16. 16 Boxplot Analysis  Five-number summary of a distribution  Minimum, Q1, Median, Q3, Maximum  Boxplot  Data is represented with a box  The ends of the box are at the first and third quartiles, i.e., the height of the box is IQR  The median is marked by a line within the box  Whiskers: two lines outside the box extended to Minimum and Maximum  Outliers: points beyond a specified outlier threshold, plotted individually
  • 17. August 14, 2014 Data Mining: Concepts and Techniques 17 Visualization of Data Dispersion: 3-D Boxplots
  • 18. 18 Properties of Normal Distribution Curve  The normal (distribution) curve  From μ–σ to μ+σ: contains about 68% of the measurements (μ: mean, σ: standard deviation)  From μ–2σ to μ+2σ: contains about 95% of it  From μ–3σ to μ+3σ: contains about 99.7% of it
  • 19. 19 Graphic Displays of Basic Statistical Descriptions  Boxplot: graphic display of five-number summary  Histogram: x-axis are values, y-axis repres. frequencies  Quantile plot: each value xi is paired with fi indicating that approximately 100 fi% of data are ≤ xi  Quantile-quantile (q-q) plot: graphs the quantiles of one univariant distribution against the corresponding quantiles of another  Scatter plot: each pair of values is a pair of coordinates and plotted as points in the plane
  • 20. 20 Histogram Analysis  Histogram: Graph display of tabulated frequencies, shown as bars  It shows what proportion of cases fall into each of several categories  Differs from a bar chart in that it is the area of the bar that denotes the value, not the height as in bar charts, a crucial distinction when the categories are not of uniform width  The categories are usually specified as non-overlapping intervals of some variable. The categories (bars) must be adjacent 0 5 10 15 20 25 30 35 40 10000 30000 50000 70000 90000
  • 21. 21 Histograms Often Tell More than Boxplots  The two histograms shown in the left may have the same boxplot representation  The same values for: min, Q1, median, Q3, max  But they have rather different data distributions
  • 22. Data Mining: Concepts and Techniques 22 Quantile Plot  Displays all of the data (allowing the user to assess both the overall behavior and unusual occurrences)  Plots quantile information  For a data xi data sorted in increasing order, fi indicates that approximately 100 fi% of the data are below or equal to the value xi
  • 23. 23 Quantile-Quantile (Q-Q) Plot  Graphs the quantiles of one univariate distribution against the corresponding quantiles of another  View: Is there is a shift in going from one distribution to another?  Example shows unit price of items sold at Branch 1 vs. Branch 2 for each quantile. Unit prices of items sold at Branch 1 tend to be lower than those at Branch 2.
  • 24. 24 Scatter plot  Provides a first look at bivariate data to see clusters of points, outliers, etc  Each pair of values is treated as a pair of coordinates and plotted as points in the plane
  • 25. 25 Positively and Negatively Correlated Data  The left half fragment is positively correlated  The right half is negative correlated
  • 27. 27 Chapter 2: Getting to Know Your Data  Data Objects and Attribute Types  Basic Statistical Descriptions of Data  Data Visualization  Measuring Data Similarity and Dissimilarity  Summary
  • 28. 28 Data Visualization  Why data visualization?  Gain insight into an information space by mapping data onto graphical primitives  Provide qualitative overview of large data sets  Search for patterns, trends, structure, irregularities, relationships among data  Help find interesting regions and suitable parameters for further quantitative analysis  Provide a visual proof of computer representations derived  Categorization of visualization methods:  Pixel-oriented visualization techniques  Geometric projection visualization techniques  Icon-based visualization techniques  Hierarchical visualization techniques  Visualizing complex data and relations
  • 29. 29 Pixel-Oriented Visualization Techniques  For a data set of m dimensions, create m windows on the screen, one for each dimension  The m dimension values of a record are mapped to m pixels at the corresponding positions in the windows  The colors of the pixels reflect the corresponding values (a) Income (b) Credit Limit (c) transaction volume (d) age
  • 30. 30 Laying Out Pixels in Circle Segments  To save space and show the connections among multiple dimensions, space filling is often done in a circle segment (a) Representing a data record in circle segment (b) Laying out pixels in circle segment Representing about 265,000 50-dimensional Data Items with the ‘Circle Segments’ Technique
  • 31. 31 Geometric Projection Visualization Techniques  Visualization of geometric transformations and projections of the data  Methods  Direct visualization  Scatterplot and scatterplot matrices  Landscapes  Projection pursuit technique: Help users find meaningful projections of multidimensional data  Prosection views  Hyperslice  Parallel coordinates
  • 32. Data Mining: Concepts and Techniques 32 Direct Data VisualizationRibbonswithTwistsBasedonVorticity
  • 33. 33 Scatterplot Matrices Matrix of scatterplots (x-y-diagrams) of the k-dim. data [total of (k2/2-k) scatterplots] UsedbyermissionofM.Ward,WorcesterPolytechnicInstitute
  • 34. 34 news articles visualized as a landscape UsedbypermissionofB.Wright,VisibleDecisionsInc. Landscapes  Visualization of the data as perspective landscape  The data needs to be transformed into a (possibly artificial) 2D spatial representation which preserves the characteristics of the data
  • 35. 35 Attr. 1 Attr. 2 Attr. kAttr. 3 • • • Parallel Coordinates  n equidistant axes which are parallel to one of the screen axes and correspond to the attributes  The axes are scaled to the [minimum, maximum]: range of the corresponding attribute  Every data item corresponds to a polygonal line which intersects each of the axes at the point which corresponds to the value for the attribute
  • 37. 37 Icon-Based Visualization Techniques  Visualization of the data values as features of icons  Typical visualization methods  Chernoff Faces  Stick Figures  General techniques  Shape coding: Use shape to represent certain information encoding  Color icons: Use color icons to encode more information  Tile bars: Use small icons to represent the relevant feature vectors in document retrieval
  • 38. 38 Chernoff Faces  A way to display variables on a two-dimensional surface, e.g., let x be eyebrow slant, y be eye size, z be nose length, etc.  The figure shows faces produced using 10 characteristics--head eccentricity, eye size, eye spacing, eye eccentricity, pupil size, eyebrow slant, nose size, mouth shape, mouth size, and mouth opening): Each assigned one of 10 possible values, generated using Mathematica (S. Dickson)  REFERENCE: Gonick, L. and Smith, W. The Cartoon Guide to Statistics. New York: Harper Perennial, p. 212, 1993  Weisstein, Eric W. "Chernoff Face." From MathWorld--A Wolfram Web Resource. mathworld.wolfram.com/ChernoffFace.html
  • 39. Data Mining: Concepts and Techniques 39 A census data figure showing age, income, gender, education, etc. usedbypermissionofG.Grinstein,UniversityofMassachusettesatLowell Stick Figure A 5-piece stick figure (1 body and 4 limbs w. different angle/length)
  • 40. 40 Hierarchical Visualization Techniques  Visualization of the data using a hierarchical partitioning into subspaces  Methods  Dimensional Stacking  Worlds-within-Worlds  Tree-Map  Cone Trees  InfoCube
  • 41. 41 Dimensional Stacking  Partitioning of the n-dimensional attribute space in 2-D subspaces, which are ‘stacked’ into each other  Partitioning of the attribute value ranges into classes. The important attributes should be used on the outer levels.  Adequate for data with ordinal attributes of low cardinality  But, difficult to display more than nine dimensions  Important to map dimensions appropriately
  • 42. 42 Used by permission of M. Ward, Worcester Polytechnic Institute Visualization of oil mining data with longitude and latitude mapped to the outer x-, y-axes and ore grade and depth mapped to the inner x-, y-axes Dimensional Stacking
  • 43. 43 Worlds-within-Worlds  Assign the function and two most important parameters to innermost world  Fix all other parameters at constant values - draw other (1 or 2 or 3 dimensional worlds choosing these as the axes)  Software that uses this paradigm  N–vision: Dynamic interaction through data glove and stereo displays, including rotation, scaling (inner) and translation (inner/outer)  Auto Visual: Static interaction by means of queries
  • 44. 44 Tree-Map  Screen-filling method which uses a hierarchical partitioning of the screen into regions depending on the attribute values  The x- and y-dimension of the screen are partitioned alternately according to the attribute values (classes) Schneiderman@UMD: Tree-Map of a File System Schneiderman@UMD: Tree-Map to support large data sets of a million items
  • 45. 45 InfoCube  A 3-D visualization technique where hierarchical information is displayed as nested semi-transparent cubes  The outermost cubes correspond to the top level data, while the subnodes or the lower level data are represented as smaller cubes inside the outermost cubes, and so on
  • 46. 46 Three-D Cone Trees  3D cone tree visualization technique works well for up to a thousand nodes or so  First build a 2D circle tree that arranges its nodes in concentric circles centered on the root node  Cannot avoid overlaps when projected to 2D  G. Robertson, J. Mackinlay, S. Card. “Cone Trees: Animated 3D Visualizations of Hierarchical Information”, ACM SIGCHI'91  Graph from Nadeau Software Consulting website: Visualize a social network data set that models the way an infection spreads from one person to the next
  • 47. Visualizing Complex Data and Relations  Visualizing non-numerical data: text and social networks  Tag cloud: visualizing user-generated tags  The importance of tag is represented by font size/color  Besides text data, there are also methods to visualize relationships, such as visualizing social networks Newsmap: Google News Stories in 2005
  • 48. 48 Chapter 2: Getting to Know Your Data  Data Objects and Attribute Types  Basic Statistical Descriptions of Data  Data Visualization  Measuring Data Similarity and Dissimilarity  Summary
  • 49. 49 Similarity and Dissimilarity  Similarity  Numerical measure of how alike two data objects are  Value is higher when objects are more alike  Often falls in the range [0,1]  Dissimilarity (e.g., distance)  Numerical measure of how different two data objects are  Lower when objects are more alike  Minimum dissimilarity is often 0  Upper limit varies  Proximity refers to a similarity or dissimilarity
  • 50. 50 Data Matrix and Dissimilarity Matrix  Data matrix  n data points with p dimensions  Two modes  Dissimilarity matrix  n data points, but registers only the distance  A triangular matrix  Single mode                   npx...nfx...n1x ............... ipx...ifx...i1x ............... 1px...1fx...11x                 0...)2,()1,( ::: )2,3() ...ndnd 0dd(3,1 0d(2,1) 0
  • 51. 51 Proximity Measure for Nominal Attributes  Can take 2 or more states, e.g., red, yellow, blue, green (generalization of a binary attribute)  Method 1: Simple matching  m: # of matches, p: total # of variables  Method 2: Use a large number of binary attributes  creating a new binary attribute for each of the M nominal states p mpjid −=),(
  • 52. 52 Proximity Measure for Binary Attributes  A contingency table for binary data  Distance measure for symmetric binary variables:  Distance measure for asymmetric binary variables:  Jaccard coefficient (similarity measure for asymmetric binary variables):  Note: Jaccard coefficient is the same as “coherence”: Object i Object j
  • 53. 53 Dissimilarity between Binary Variables  Example  Gender is a symmetric attribute  The remaining attributes are asymmetric binary  Let the values Y and P be 1, and the value N 0 Name Gender Fever Cough Test-1 Test-2 Test-3 Test-4 Jack M Y N P N N N Mary F Y N P N P N Jim M Y P N N N N 75.0 211 21 ),( 67.0 111 11 ),( 33.0 102 10 ),( = ++ + = = ++ + = = ++ + = maryjimd jimjackd maryjackd
  • 54. 54 Standardizing Numeric Data  Z-score:  X: raw score to be standardized, μ: mean of the population, σ: standard deviation  the distance between the raw score and the population mean in units of the standard deviation  negative when the raw score is below the mean, “+” when above  An alternative way: Calculate the mean absolute deviation where  standardized measure (z-score):  Using mean absolute deviation is more robust than using standard deviation .)... 21 1 nffff xx(xnm +++= |)|...|||(|1 21 fnffffff mxmxmxns −++−+−= f fif if s mx z − = σ µ−= xz
  • 55. 55 Example: Data Matrix and Dissimilarity Matrix point attribute1 attribute2 x1 1 2 x2 3 5 x3 2 0 x4 4 5 Dissimilarity Matrix (with Euclidean Distance) x1 x2 x3 x4 x1 0 x2 3.61 0 x3 2.24 5.1 0 x4 4.24 1 5.39 0 Data Matrix
  • 56. 56 Distance on Numeric Data: Minkowski Distance  Minkowski distance: A popular distance measure where i = (xi1, xi2, …, xip) and j = (xj1, xj2, …, xjp) are two p- dimensional data objects, and h is the order (the distance so defined is also called L-h norm)  Properties  d(i, j) > 0 if i ≠ j, and d(i, i) = 0 (Positive definiteness)  d(i, j) = d(j, i) (Symmetry)  d(i, j) ≤ d(i, k) + d(k, j) (Triangle Inequality)  A distance that satisfies these properties is a metric
  • 57. 57 Special Cases of Minkowski Distance  h = 1: Manhattan (city block, L1 norm) distance  E.g., the Hamming distance: the number of bits that are different between two binary vectors  h = 2: (L2 norm) Euclidean distance  h → ∞. “supremum” (Lmax norm, L∞ norm) distance.  This is the maximum difference between any component (attribute) of the vectors )||...|||(|),( 22 22 2 11 pp j x i x j x i x j x i xjid −++−+−= ||...||||),( 2211 pp j x i x j x i x j x i xjid −++−+−=
  • 58. 58 Example: Minkowski Distance Dissimilarity Matrices point attribute 1 attribute 2 x1 1 2 x2 3 5 x3 2 0 x4 4 5 L x1 x2 x3 x4 x1 0 x2 5 0 x3 3 6 0 x4 6 1 7 0 L2 x1 x2 x3 x4 x1 0 x2 3.61 0 x3 2.24 5.1 0 x4 4.24 1 5.39 0 L∞ x1 x2 x3 x4 x1 0 x2 3 0 x3 2 5 0 x4 3 1 5 0 Manhattan (L1) Euclidean (L2) Supremum
  • 59. 59 Ordinal Variables  An ordinal variable can be discrete or continuous  Order is important, e.g., rank  Can be treated like interval-scaled  replace xif by their rank  map the range of each variable onto [0, 1] by replacing i-th object in the f-th variable by  compute the dissimilarity using methods for interval-scaled variables 1 1 − − = f if if M r z },...,1{ fif Mr ∈
  • 60. 60 Attributes of Mixed Type  A database may contain all attribute types  Nominal, symmetric binary, asymmetric binary, numeric, ordinal  One may use a weighted formula to combine their effects  f is binary or nominal: dij (f) = 0 if xif= xjf , or dij (f) = 1 otherwise  f is numeric: use the normalized distance  f is ordinal  Compute ranks rif and  Treat zif as interval-scaled )( 1 )()( 1 ),( f ij p f f ij f ij p f d jid δ δ = = Σ Σ = 1 1 − − = f if M rzif
  • 61. 61 Cosine Similarity  A document can be represented by thousands of attributes, each recording the frequency of a particular word (such as keywords) or phrase in the document.  Other vector objects: gene features in micro-arrays, …  Applications: information retrieval, biologic taxonomy, gene feature mapping, ...  Cosine measure: If d1 and d2 are two vectors (e.g., term-frequency vectors), then cos(d1 , d2 ) = (d1 • d2 ) /||d1 || ||d2 || , where • indicates vector dot product, ||d||: the length of vector d
  • 62. 62 Example: Cosine Similarity  cos(d1 , d2 ) = (d1 • d2 ) /||d1 || ||d2 || , where • indicates vector dot product, ||d|: the length of vector d  Ex: Find the similarity between documents 1 and 2. d1 = (5, 0, 3, 0, 2, 0, 0, 2, 0, 0) d2 = (3, 0, 2, 0, 1, 1, 0, 1, 0, 1) d1 •d2 = 5*3+0*0+3*2+0*0+2*1+0*1+0*1+2*1+0*0+0*1 = 25 ||d1 ||= (5*5+0*0+3*3+0*0+2*2+0*0+0*0+2*2+0*0+0*0)0.5 =(42)0.5 = 6.481 ||d2 ||= (3*3+0*0+2*2+0*0+1*1+1*1+0*0+1*1+0*0+1*1)0.5 =(17)0.5 = 4.12 cos(d1 , d2 ) = 0.94
  • 63. 63 KL Divergence: Comparing Two Probability Distributions  The Kullback-Leibler (KL) divergence: Measure the difference between two probability distributions over the same variable x  From information theory, closely related to relative entropy, information divergence, and information for discrimination  DKL(p(x) || q(x)): divergence of q(x) from p(x), measuring the information lost when q(x) is used to approximate p(x)  Discrete form:  The KL divergence measures the expected number of extra bits required to code samples from p(x) (“true” distribution) when using a code based on q(x), which represents a theory, model, description, or approximation of p(x)  Its continuous form:  The KL divergence: not a distance measure, not a metric: asymmetric, not satisfy triangular inequality
  • 64. 64 How to Compute the KL Divergence?  Base on the formula, DKL(P,Q) ≥ 0 and DKL(P || Q) = 0 if and only if P = Q.  How about when p = 0 or q = 0?  limp→0 p log p = 0  when p != 0 but q = 0, DKL(p || q) is defined as ∞, i.e., if one event e is possible (i.e., p(e) > 0), and the other predicts it is absolutely impossible (i.e., q(e) = 0), then the two distributions are absolutely different  However, in practice, P and Q are derived from frequency distributions, not counting the possibility of unseen events. Thus smoothing is needed  Example: P : (a : 3/5, b : 1/5, c : 1/5). Q : (a : 5/9, b : 3/9, d : 1/9)  need to introduce a small constant ϵ, e.g., ϵ = 10−3  The sample set observed in P, SP = {a, b, c}, SQ = {a, b, d}, SU = {a, b, c, d}  Smoothing, add missing symbols to each distribution, with probability ϵ  P′ : (a : 3/5 − /ϵ 3, b : 1/5 − /ϵ 3, c : 1/5 − /ϵ 3, d : ϵ)  Q′ : (a : 5/9 − /ϵ 3, b : 3/9 − /ϵ 3, c : , dϵ : 1/9 − /ϵ 3).  DKL(P’ || Q’) can be computed easily
  • 65. 65 Chapter 2: Getting to Know Your Data  Data Objects and Attribute Types  Basic Statistical Descriptions of Data  Data Visualization  Measuring Data Similarity and Dissimilarity  Summary
  • 66. Summary  Data attribute types: nominal, binary, ordinal, interval-scaled, ratio-scaled  Many types of data sets, e.g., numerical, text, graph, Web, image.  Gain insight into the data by:  Basic statistical data description: central tendency, dispersion, graphical displays  Data visualization: map data onto graphical primitives  Measure data similarity  Above steps are the beginning of data preprocessing  Many methods have been developed but still an active area of research
  • 67. References  W. Cleveland, Visualizing Data, Hobart Press, 1993  T. Dasu and T. Johnson. Exploratory Data Mining and Data Cleaning. John Wiley, 2003  U. Fayyad, G. Grinstein, and A. Wierse. Information Visualization in Data Mining and Knowledge Discovery, Morgan Kaufmann, 2001  L. Kaufman and P. J. Rousseeuw. Finding Groups in Data: an Introduction to Cluster Analysis. John Wiley & Sons, 1990.  H. V. Jagadish et al., Special Issue on Data Reduction Techniques. Bulletin of the Tech. Committee on Data Eng., 20(4), Dec. 1997  D. A. Keim. Information visualization and visual data mining, IEEE trans. on Visualization and Computer Graphics, 8(1), 2002  D. Pyle. Data Preparation for Data Mining. Morgan Kaufmann, 1999  S. Santini and R. Jain,” Similarity measures”, IEEE Trans. on Pattern Analysis and Machine Intelligence, 21(9), 1999  E. R. Tufte. The Visual Display of Quantitative Information, 2nd ed., Graphics Press, 2001  C. Yu et al., Visual data mining of multimedia data for social and behavioral studies, Information Visualization, 8(1), 2009
  • 68. August 14, 2014 Data Mining: Concepts and Techniques 68

Editor's Notes

  1. May we categorize data along the following dimensions? - structured, semi-structured, and unstructured - numeric and categorical - static and dynamic (temporal?) - by application
  2. Note to self (MK): last part of slide does not clearly match slides that follow Introduction slides: In the current version, we only talk about numeric data. Can we add some materials about non-numeric data. - text statistics, TF/IDF - visualization of text statistics such as word cloud - distribution of Internet (IN, SCC, OUT, …) - visualization of social relationship (e.g., http://renlifang.msra.cn/)
  3. Redraw the boxplot! Yes, we need a more real boxplot graph!
  4. JH: Maybe we can remove Loess curve
  5. JH: A better and BASIC histogram figure --- because this one overlaps with a later one!
  6. Note: We need to label the dark plotted points as Q1, Median, Q3 – that would help in understanding this graph. Tell audience: There is a shift in distribution of branch 1 WRT branch 2 in that the unit prices of items sold at branch 1 tend to be lower than those at branch 2.
  7. Need a better and more MEANINGFUL scatter plot! -JH
  8. CC (conference call) 08.11.02: Need to check Wiki to update references.
  9. CC (conference call) 08.11.02: Need to check Wiki to update references.
  10. CC 08/11/02: Need a good survey. JH or JP may find a good book on amazon in order to update this slide. JH’s colleagues may generate some images for book. We may consider the following books. Visualizing Data: Exploring and Explaining Data with the Processing Environment - Paperback - Illustrated (Jan 11, 2008) by Ben Fry. JH: I have ordered the book.
  11. http://books.elsevier.com/companions/1558606890/pictures/Chapter_01/fig1-6b.gif
  12. “two attributes mapped to axes, remaining attributes mapped to angle or length of limbs”. Look at texture pattern.
  13. MK 08/10/18: Is it “Treemap” or “Tree-Map”? - inconsistent in this file.
  14. Picture: http://www.cs.umd.edu/hcil/treemap-history/
  15. JH: I have not found a good infocube picture on the web
  16. http://nadeausoftware.com/articles/visualization
  17. Keep here because keeping it in clustering chapter seems far away. 08.11.02
  18. Distance is just once way of measuring dissimilarity (wiki). Changed “register only the distance” to “registers only the difference” or “dissimiarity”?
  19. MK: I tried to change equations so as to match notation in book, but each time I try to install the equation editor, it fails! Agh!
  20. MK: For lecture, this may be OK here, but I think discussion of standardization/normalization is better kept all together in Chapter 3
  21. MK: Machine learning used the term “feature VECTORS” > I made some changes to the wording of this slide because it implied that our previous data were not vectors, but they were all feature vectors. I also changed the example since the one used was from Tan’s book (see next slide). Chapter 3: Statistics Methods Co-variance distance K-L divergence
  22. 09/09/25MK: New example (previous one was from Tan’s book). Chapter 3: Statistics Methods Co-variance distance K-L divergence
  23. 08/10/23: This slide was out of date. Draft of new version above. Cut out the following: Data description, data exploration, and measure data similarity set the basis for quality data preprocessing A lot of methods have been developed but data preprocessing still an active area of research
  24. MK 08.11.02: This needs to be updated to reflect changes.