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Power-law contribution of the kinetic energy of
reversible self-assembly worm-like chain in
thermal bath.
PhD Student Andrii S. Lukianets
Head of department Pyotr M. Tomchuk
Theoretical Physics | Institute of Physics NASU
”
October 13, 2015
Statistical theory of polymer growth: predictions
𝐻 =
𝑛
π‘ˆπ‘π‘œπ‘›π‘“ π‘Ÿπ‘› +
𝑛
𝐾( 𝑣 𝑛) 2
𝑛
a. The product of aggregation is one-dimensional inextensible worm-like chain. b. Dependence of the total number of dye molecules in all n-mers on the length.
𝑐 𝑛
𝑍 = 𝑒π‘₯𝑝
βˆ’π»
π‘˜π‘‡
98% of all boos that deals with Polymer Physics
1
Aggregation phenomena and chain conformation
c. The product of aggregation is a rigid rod. d. Partition function renormalization.
Statistical mechanics of aggregation in anisotropic solvents: kinetic energy of aggregates and universal power-law behavior far from criticality/ Pergamenshchik
𝑐 𝑛
𝑛
Kinetic energy contribution
Only Potential energy
𝐻 =
𝑛
𝐻 𝑛 =
𝑛
π‘ˆπ‘π‘œπ‘›π‘“
𝑛
+ πΎπ‘‘π‘Ÿ
𝑛
+ πΎπ‘Ÿπ‘œπ‘‘
𝑛
+ 𝐾𝑓𝑙𝑒π‘₯
𝑛
+ 𝑖𝑛𝑑 𝑍 π‘Ž,𝑛 =
1
𝑁𝐢 𝑛 !
πœˆπ‘› π‘ž 𝑒 π‘›βˆ’1 πœ€/π‘˜π‘‡ 𝑁𝐢 𝑛
πœ€
43
The motion of a polymer in a solution
= π΅βˆ’1
𝑛 π‘ž
π‘’βˆ’π‘›(πœ‘βˆ’πœ€/π‘˜π‘‡)
Principled contribution of the kinetic energy
Self-intersection
Modeling and attempts of description:
Kinetic energy contribution to the partition function
e. System modeling
5
𝑑𝑝 𝑒π‘₯𝑝 βˆ’
𝑝2
2π‘š
~π‘š
1
2~𝑛
1
2
Coupled pendulums
𝐾 =
π‘šπ‘™2
2
π‘˜=1
π‘βˆ’1
𝑁 βˆ’ π‘˜ 𝝋 π’Œ
2 +
π‘˜=2
π‘βˆ’1
2 𝑁 βˆ’ π‘˜
π‘˜=2
π‘˜βˆ’1
π‹π’Š 𝝋 π’Œ cos(π‹π’Š βˆ’ 𝝋 π’Œ) 7
𝐾 =
π‘š
2
𝑛=1
𝑁
𝑹 𝒏
2
𝑅 𝑛 = 𝑅1 +
𝑛=1
π‘βˆ’1
π‘Ÿπ‘– π‘Ÿπ‘– = 𝑃𝑖, 𝑃𝑖+1
6
Attempt #1: Kinetic energy of freely jointed chain
𝑦
π‘₯
𝑹 𝒏
𝑹 𝒏+𝟏
𝑹 𝑡
π’“π’Š 𝝋 π‘΅βˆ’πŸ
h. System consists
of N-beads
connected by N-1
links of fixed length
π’‘π’Š =
πœ•π»
πœ• π‹π’Š
8
πœ“(𝑅0, 𝑅𝑓, 𝑑𝑓) = 𝐴
𝑅0
𝑅 𝑓
π’Ÿπ‘Ή 𝑑 𝑒π‘₯𝑝 βˆ’
0
𝑑 𝑓
𝑹 𝒏
𝟐
𝑑
4𝐷
𝑑𝑑
πœ•πœ“
πœ•π‘‘
= 𝐷2
πœ•πœ“2
πœ•π‘…2
πœ“ = 𝐢
𝑛=1
𝑁
𝑅0
𝑅 𝑓
π’Ÿπ‘Ή 𝒏 𝑑 𝑒π‘₯𝑝 βˆ’
𝑀
4π‘˜π‘‡πœπΏ
𝑛=1
𝑁
π‘Ž
0
𝑑 𝑓
𝑹 𝒏
𝟐
𝑑 𝑑𝑑
𝑛=2
𝑁
𝜹
𝑹 𝒏 𝑑 βˆ’ 𝑹 π’βˆ’πŸ 𝑑 2
π‘Ž2 βˆ’ 1
Dynamics of a three-dimensional inextensible chain/ Ferrari, Paturej, Vilgis
10
9
11
Brownian particles: constrains
𝑅0
𝑅𝑓
Attempt #2: Path integral approach to the dynamics of a polymer chain
g. Brownian particle in motion
𝑍 π‘Ž = π’Ÿπ’“π‘– π’Ÿπ’—π’Š 𝑒π‘₯𝑝 βˆ’
𝑖
π‘š
2π‘˜π‘‡
𝒗𝑖
2
𝑹 𝒏
𝑹 𝒏+𝟏
π’“π’Š
π’—π’Š+𝟏
π’—π’Š
12
Path integral form
13
𝑖=1
π‘βˆ’1
𝜹 𝒓𝑖(πŠπ‘–+1 βˆ’ πŠπ‘–)
Attempt #3: Path integral approach to the motion of a polymer chain
g. Constrained trajectories
𝑍 π‘Ž,𝑣 = 𝐴
𝑖=1
π‘βˆ’1
πœ‹
𝛼𝑖
𝛼𝑖+1 = 1 +
π‘π‘œπ‘ 2 πœ‘π‘–,𝑖+1
4𝛼𝑖
𝛼1 = 1
𝑹 𝒏
𝑹 𝒏+𝟏
π’“π’Š
π’—π’Š+𝟏
π’—π’Š
𝑍 π‘Ž,𝑣 =
πœ‹
2
1
𝑙
π‘βˆ’1
2π‘˜π‘‡πœ‹
π‘š
𝑁+1
2
πœ‹
π‘βˆ’1
2 1 +
1
4
𝑖=1
π‘βˆ’2
π‘π‘œπ‘ 2 πœ‘π‘–,𝑖+1
βˆ’
1
2
14
Estimation:
15
Path integral approach to the motion of a polymer chain
π‘π‘œπ‘ 2
πœ‘π‘–,𝑖+1
4
≀
1
4
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Analytical modeling of polymer dynamics in a solution.

  • 1. Power-law contribution of the kinetic energy of reversible self-assembly worm-like chain in thermal bath. PhD Student Andrii S. Lukianets Head of department Pyotr M. Tomchuk Theoretical Physics | Institute of Physics NASU ” October 13, 2015
  • 2. Statistical theory of polymer growth: predictions 𝐻 = 𝑛 π‘ˆπ‘π‘œπ‘›π‘“ π‘Ÿπ‘› + 𝑛 𝐾( 𝑣 𝑛) 2 𝑛 a. The product of aggregation is one-dimensional inextensible worm-like chain. b. Dependence of the total number of dye molecules in all n-mers on the length. 𝑐 𝑛 𝑍 = 𝑒π‘₯𝑝 βˆ’π» π‘˜π‘‡ 98% of all boos that deals with Polymer Physics 1 Aggregation phenomena and chain conformation
  • 3. c. The product of aggregation is a rigid rod. d. Partition function renormalization. Statistical mechanics of aggregation in anisotropic solvents: kinetic energy of aggregates and universal power-law behavior far from criticality/ Pergamenshchik 𝑐 𝑛 𝑛 Kinetic energy contribution Only Potential energy 𝐻 = 𝑛 𝐻 𝑛 = 𝑛 π‘ˆπ‘π‘œπ‘›π‘“ 𝑛 + πΎπ‘‘π‘Ÿ 𝑛 + πΎπ‘Ÿπ‘œπ‘‘ 𝑛 + 𝐾𝑓𝑙𝑒π‘₯ 𝑛 + 𝑖𝑛𝑑 𝑍 π‘Ž,𝑛 = 1 𝑁𝐢 𝑛 ! πœˆπ‘› π‘ž 𝑒 π‘›βˆ’1 πœ€/π‘˜π‘‡ 𝑁𝐢 𝑛 πœ€ 43 The motion of a polymer in a solution = π΅βˆ’1 𝑛 π‘ž π‘’βˆ’π‘›(πœ‘βˆ’πœ€/π‘˜π‘‡) Principled contribution of the kinetic energy Self-intersection
  • 4. Modeling and attempts of description: Kinetic energy contribution to the partition function e. System modeling 5 𝑑𝑝 𝑒π‘₯𝑝 βˆ’ 𝑝2 2π‘š ~π‘š 1 2~𝑛 1 2
  • 5. Coupled pendulums 𝐾 = π‘šπ‘™2 2 π‘˜=1 π‘βˆ’1 𝑁 βˆ’ π‘˜ 𝝋 π’Œ 2 + π‘˜=2 π‘βˆ’1 2 𝑁 βˆ’ π‘˜ π‘˜=2 π‘˜βˆ’1 π‹π’Š 𝝋 π’Œ cos(π‹π’Š βˆ’ 𝝋 π’Œ) 7 𝐾 = π‘š 2 𝑛=1 𝑁 𝑹 𝒏 2 𝑅 𝑛 = 𝑅1 + 𝑛=1 π‘βˆ’1 π‘Ÿπ‘– π‘Ÿπ‘– = 𝑃𝑖, 𝑃𝑖+1 6 Attempt #1: Kinetic energy of freely jointed chain 𝑦 π‘₯ 𝑹 𝒏 𝑹 𝒏+𝟏 𝑹 𝑡 π’“π’Š 𝝋 π‘΅βˆ’πŸ h. System consists of N-beads connected by N-1 links of fixed length π’‘π’Š = πœ•π» πœ• π‹π’Š 8
  • 6. πœ“(𝑅0, 𝑅𝑓, 𝑑𝑓) = 𝐴 𝑅0 𝑅 𝑓 π’Ÿπ‘Ή 𝑑 𝑒π‘₯𝑝 βˆ’ 0 𝑑 𝑓 𝑹 𝒏 𝟐 𝑑 4𝐷 𝑑𝑑 πœ•πœ“ πœ•π‘‘ = 𝐷2 πœ•πœ“2 πœ•π‘…2 πœ“ = 𝐢 𝑛=1 𝑁 𝑅0 𝑅 𝑓 π’Ÿπ‘Ή 𝒏 𝑑 𝑒π‘₯𝑝 βˆ’ 𝑀 4π‘˜π‘‡πœπΏ 𝑛=1 𝑁 π‘Ž 0 𝑑 𝑓 𝑹 𝒏 𝟐 𝑑 𝑑𝑑 𝑛=2 𝑁 𝜹 𝑹 𝒏 𝑑 βˆ’ 𝑹 π’βˆ’πŸ 𝑑 2 π‘Ž2 βˆ’ 1 Dynamics of a three-dimensional inextensible chain/ Ferrari, Paturej, Vilgis 10 9 11 Brownian particles: constrains 𝑅0 𝑅𝑓 Attempt #2: Path integral approach to the dynamics of a polymer chain g. Brownian particle in motion
  • 7. 𝑍 π‘Ž = π’Ÿπ’“π‘– π’Ÿπ’—π’Š 𝑒π‘₯𝑝 βˆ’ 𝑖 π‘š 2π‘˜π‘‡ 𝒗𝑖 2 𝑹 𝒏 𝑹 𝒏+𝟏 π’“π’Š π’—π’Š+𝟏 π’—π’Š 12 Path integral form 13 𝑖=1 π‘βˆ’1 𝜹 𝒓𝑖(πŠπ‘–+1 βˆ’ πŠπ‘–) Attempt #3: Path integral approach to the motion of a polymer chain g. Constrained trajectories 𝑍 π‘Ž,𝑣 = 𝐴 𝑖=1 π‘βˆ’1 πœ‹ 𝛼𝑖 𝛼𝑖+1 = 1 + π‘π‘œπ‘ 2 πœ‘π‘–,𝑖+1 4𝛼𝑖 𝛼1 = 1
  • 8. 𝑹 𝒏 𝑹 𝒏+𝟏 π’“π’Š π’—π’Š+𝟏 π’—π’Š 𝑍 π‘Ž,𝑣 = πœ‹ 2 1 𝑙 π‘βˆ’1 2π‘˜π‘‡πœ‹ π‘š 𝑁+1 2 πœ‹ π‘βˆ’1 2 1 + 1 4 𝑖=1 π‘βˆ’2 π‘π‘œπ‘ 2 πœ‘π‘–,𝑖+1 βˆ’ 1 2 14 Estimation: 15 Path integral approach to the motion of a polymer chain π‘π‘œπ‘ 2 πœ‘π‘–,𝑖+1 4 ≀ 1 4