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Spatial Statistical
Descriptors
Tony Fast
NIST Workshop
+
How do we discuss the variety in materials science
information?

Materials are hierarchical and multi-physics.
+
Statistics are material descriptors
β-Titanium
REDUCED OUTPUT:
Grain size
Grain Faces
Number of Grains
Mean Curvature
Nearest Grain Analysis
+

First Order Statistics
n 

Effective statistics the describe a material volume
n 
n 

n 

Effective Statistics require:
n 

n 

n 

Volume Fraction, Phase Distribution, Mean’s, Standard Deviation’s
Often times the value is a single feature parameters, but the
information in spatial materials data contains information about the
distribution.
n  The distribution increases the number of variables in the system,
but adds to the fidelity of the material feature description.

Data processing
n  Which could inject incorrect assumptions?
Limited return on the Time invested

How do we get more information out of spatial datasets & faster?
+

Goals of today: Advanced Spatial
Statistics and Signal Processing
n 

Practical manipulation of multidimensional and multimodal
datasets.

n 

New statistics tools to quantify material structures.

n 

The variety of metadata and the uniformity of data.

n 

Advanced methods for extracting structure-propertyprocessing connections.

n 

To start thinking differently about the data you generate,
ingest, and manipulate.
+

Focus on Scalability
n 

Datasets are getting larger, more channels can be extracted,
and the features are less understood.

n 

Exploring the new space of data requires scalable
parametric and statistical material feature descriptors.
+

Types of Higher-Order Statistics
n 

Moving Window Average – Code demo of image processing
filters

n 

Neighborhood Connectivity – Code demo of Delaunay
tessellation and Voronoi Triangulation.
n 
n 

Shortest network path
GraphTehoryTest

n 

Chord Length Distribution -Probably a chord of length d will
contiguously span a region containing some feature

n 

Pair Correlation Functions – In depth

n 

Vector-resolved spatial statistics – In depth
+
Spatial Statistics
n 

Spatial statistics are a joint probability of material feature
domain with a posterior probability relating to a spatial
information.
Spatial statistics are the probability of finding <Feature A> and
<Feature B> separated by a <Vector,Distance> of <d-Tuple>"

n 

Main Spatial Statistics to discuss
n 

n 

Pair Correlation Function
n  Probability of two features two separated by a vector of magnitude
r
Vector resolved spatial statistics
n  Probability of two features two separated by a vector t
n  The pair correlation function is a reduced projection of the vector
resolved statistics
+ The Breakdown
Index into features in the
spatial materials signal
•  Direct or latent variables
•  Basis function representation

Digital Signals i & j
•  Gridded or Point Cloud
•  Experimental or Simulated
•  Periodic or non-periodic
•  Any scale

Numerator is occurrence of true
conditions
•  Summation only occurs when
s + t is a valid vector

Spatial Statistics
•  Conditional, joint
probability
Joint Probability of two features i & j
•  If i=j, autocorrelation
•  otherwise, crosscorrelation
Index or vector into a spatial condition

Denominator :Number of tests on
the spatial condition
•  Number of valid s+t vectors
+

Vector Resolved Spatial Correlation Function
of a Gridded Image

n 

Computing this relationship directly is costly.

n 

Since it is a convolution, we will use the Fourier transform
again.
n 

Used to compute the numerator and denominator separately.

Code that Animates the
statistics
+

There is a Fourier Convolution
Property
n 

Wikipedia
+

First Consideration: Signal pattern
n 

The input signals must be on an
even grid to use DFT
methods.

Pattern

Point
Boundaries

n 

Work around
n 

Non-Uniform FFT’s ( Most accurate )

n 

Binning point cloud data ( Introduces uncertainty )

Gridded
+

The Fourier Transform introduces
periodicity.
+ Second Consideration: Periodicity Part 1
Source

Experiment

Simulation

Boundary Conditions

Boundary Conditions

Nonperiodic

Ø

Nonperiodic

Periodic

Ø
Ø

Group Discussion
If the denominator is the number of counts, how will it change with t?
+
The Denominator
n 

If any dimensions are nonperiodic then the denominator
always varies with position. The number of times a variable
can be tested.

when
n 

Convolution!

n 

Needs to be computed less
frequently than the numerator.

n 

Partial Periodicity is possible.
+ Second Consideration: Periodicity Part 2
Source

Experiment

Simulation

Boundary Conditions

Boundary Conditions

Nonperiodic

Nonperiodic

Ø

Ø

1

Ø

Periodic

1
+

Pair Correlation Functions and
Spatial Statistics
n 

Pair Correlation functions are a projection of the spatial
statistics. Either the magnitudes of the vectors or an average
of the vectors about their angle.

n 

Group exercise : design a workflow to compute pair
correlation functions on periodic point cloud data.

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An Slight Overview of the Critical Elements of Spatial Statistics

  • 2. + How do we discuss the variety in materials science information? Materials are hierarchical and multi-physics.
  • 3. + Statistics are material descriptors β-Titanium REDUCED OUTPUT: Grain size Grain Faces Number of Grains Mean Curvature Nearest Grain Analysis
  • 4. + First Order Statistics n  Effective statistics the describe a material volume n  n  n  Effective Statistics require: n  n  n  Volume Fraction, Phase Distribution, Mean’s, Standard Deviation’s Often times the value is a single feature parameters, but the information in spatial materials data contains information about the distribution. n  The distribution increases the number of variables in the system, but adds to the fidelity of the material feature description. Data processing n  Which could inject incorrect assumptions? Limited return on the Time invested How do we get more information out of spatial datasets & faster?
  • 5. + Goals of today: Advanced Spatial Statistics and Signal Processing n  Practical manipulation of multidimensional and multimodal datasets. n  New statistics tools to quantify material structures. n  The variety of metadata and the uniformity of data. n  Advanced methods for extracting structure-propertyprocessing connections. n  To start thinking differently about the data you generate, ingest, and manipulate.
  • 6. + Focus on Scalability n  Datasets are getting larger, more channels can be extracted, and the features are less understood. n  Exploring the new space of data requires scalable parametric and statistical material feature descriptors.
  • 7. + Types of Higher-Order Statistics n  Moving Window Average – Code demo of image processing filters n  Neighborhood Connectivity – Code demo of Delaunay tessellation and Voronoi Triangulation. n  n  Shortest network path GraphTehoryTest n  Chord Length Distribution -Probably a chord of length d will contiguously span a region containing some feature n  Pair Correlation Functions – In depth n  Vector-resolved spatial statistics – In depth
  • 8. + Spatial Statistics n  Spatial statistics are a joint probability of material feature domain with a posterior probability relating to a spatial information. Spatial statistics are the probability of finding <Feature A> and <Feature B> separated by a <Vector,Distance> of <d-Tuple>" n  Main Spatial Statistics to discuss n  n  Pair Correlation Function n  Probability of two features two separated by a vector of magnitude r Vector resolved spatial statistics n  Probability of two features two separated by a vector t n  The pair correlation function is a reduced projection of the vector resolved statistics
  • 9. + The Breakdown Index into features in the spatial materials signal •  Direct or latent variables •  Basis function representation Digital Signals i & j •  Gridded or Point Cloud •  Experimental or Simulated •  Periodic or non-periodic •  Any scale Numerator is occurrence of true conditions •  Summation only occurs when s + t is a valid vector Spatial Statistics •  Conditional, joint probability Joint Probability of two features i & j •  If i=j, autocorrelation •  otherwise, crosscorrelation Index or vector into a spatial condition Denominator :Number of tests on the spatial condition •  Number of valid s+t vectors
  • 10. + Vector Resolved Spatial Correlation Function of a Gridded Image n  Computing this relationship directly is costly. n  Since it is a convolution, we will use the Fourier transform again. n  Used to compute the numerator and denominator separately. Code that Animates the statistics
  • 11. + There is a Fourier Convolution Property n  Wikipedia
  • 12. + First Consideration: Signal pattern n  The input signals must be on an even grid to use DFT methods. Pattern Point Boundaries n  Work around n  Non-Uniform FFT’s ( Most accurate ) n  Binning point cloud data ( Introduces uncertainty ) Gridded
  • 13. + The Fourier Transform introduces periodicity.
  • 14. + Second Consideration: Periodicity Part 1 Source Experiment Simulation Boundary Conditions Boundary Conditions Nonperiodic Ø Nonperiodic Periodic Ø Ø Group Discussion If the denominator is the number of counts, how will it change with t?
  • 15. + The Denominator n  If any dimensions are nonperiodic then the denominator always varies with position. The number of times a variable can be tested. when n  Convolution! n  Needs to be computed less frequently than the numerator. n  Partial Periodicity is possible.
  • 16. + Second Consideration: Periodicity Part 2 Source Experiment Simulation Boundary Conditions Boundary Conditions Nonperiodic Nonperiodic Ø Ø 1 Ø Periodic 1
  • 17. + Pair Correlation Functions and Spatial Statistics n  Pair Correlation functions are a projection of the spatial statistics. Either the magnitudes of the vectors or an average of the vectors about their angle. n  Group exercise : design a workflow to compute pair correlation functions on periodic point cloud data.