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         Modelling “calçots” production by means of Gompertz equation
                        M. Plans1*, J. Simó1 , F.Casañas1, J.Sabaté1
     *
         marcal.plans@upc.edu,1 Departament d’Enginyeria Agroalimentària i
                 Biotecnologia, Universitat Politècnica de Catalunya

                                              Abstract
     “Calçots”, the second-year onion resprouts, are produced from November to
     May. Plants are harvested individually when an acceptable amount of “calçots”
     reach the commercial size. In order to optimize the culture management a
     modified Gompertz equation was used to model the commercial “calçots”
     production. Prediction of plant yield evolution appeared enough good to
     establish significant differences between the three populations checked.
             Keywords: onion, sigmoid, yield.
1.       Introduction
             “Calçots” are the second-year onion resprouts of the “Ceba Blanca
     Tardana de Lleida” landrace. In “calçots” production all the resprouts from one
     onion are harvested at the same time when an acceptable amount of “calçots”
     (≥50%) reach the commercial size (1.7 cm – 2.5 cm in diameter and 20 cm in
     length, according to the Protected Geographical Indication “Calçot de Valls”
     regulations). Each onion yields between 1 and 20 “calçots”, but their thickness
     is negatively correlated with the number of “calçots” per onion, so in the most
     productive onions many “calçots” never reach the commercial requirements.
     The production lasts from mid-November to the end of April, and a more or
     less constant release of marketable product is needed during this period. As
     there is genetic variability in earliness, farmers use combinations of genotypes
     and/or planting dates to adjust the production to the consumers demand but
     these combinations are made quite inefficiently.
            An optimum management of the crop would require a deep knowledge
     and precise monitoring of the growth dynamics. Biological systems modelling
     allows predicting development, to determine the critical points and to optimize
     processes [1]. Our objectives are: i) to model the commercial “calçots”
     production in a population and ii) to compare the checked populations, in order
     to improve the culture management.
2.       Material and methods
            One hundred onions of three different populations were monitored plant
     by plant. During seven months, the number of commercial “calçots” in each
     onion was scored every two weeks.



     XIII Conferencia Española y III Encuentro Iberoamericano de Biometría   CEIB2011
     7 a 9 de septiembre de 2011                                             Barcelona
2                                       Template for the oral communications
            The data recorded in the three populations suggested that the evolution
     of the number of commercial “calçots” (y) can be described by a sigmoid
     function which shows three phases corresponding to latency, growth and
     steady state phase. This function requires three parameters: the lag time (λ),
     the maximum growth rate (µmax) and the asymptotic value for long time (A), in
     the same way that bacterial growth was described by Gompertz and modified
     by Zwietering (Table 1)[1].

          Table 1. Original and modified Gompertz equations for bacterial growth.
                Gompertz Equation                Modified Gompertz Equation
                                                               ·e              
          y  a·exp   exp  b  c·x     y  A·exp   exp  max ·   t   1 
                                                              A                 


            Nonlinear least squares, determined using Gauss-Newton algorithm [2],
     were used to estimate the parameters of modified Gompertz equation for each
     plant. A One-Way ANOVA has been used in search of statistical significant
     differences between the three populations for the three fitting parameters (λ,
     µmax, A ). Computations were carried out by R-program [3] and Agricolae
     packages [4].
            Plants that did not reach four commercial “calçots” at the end of the
     season were discarded as this number is not sufficient to show trends in the
     model. Anywhere, in a next future such unproductive onions will not be
     present in the new varieties that are being obtained by breeding.
3.       Results and discussion
            Significant differences occurred between populations referring to the
     mean values for λ . For µmax population P1 and P2 were significantly different
     from P3, and for parameter A population P2 was significantly different from
     P3 (Table 2).
            The variation into population estimated by means of the standard
     deviation is due to genetic and environmental differences between plants and
     are those expected in a population of an allogamous open pollinated landrace.
     The new improved varieties obtained from these and other populations will
     decrease their internal variability as breeding processes tend to increase the
     frequencies of the favourable alleles and concentrate the phenotypes around
     the mean.
3
Table 2. Mean values (± SE of the mean) of the parameters for each population
  Population         λ (week)          µmax (week-1)             A                       R2
       P1          4.55c * ± 0.39      2.25b ± 0.27       7.97ab ± 0.41       0.970 ± 0.002
       P2          5.98b ± 0.33        1.87b ± 0.12       8.62a ± 0.38        0.978 ± 0.002
       P3          7.50a ± 0.51        3.24a ± 0.60       6.87b ± 0.39        0.972 ± 0.003
*Mean values in a column followed by a different letter are significantly different (p≤0.05) with
the LSD test.
         The goodness of the model adjustment estimated in each population
(R2) is similar to the one reported by Yin when modelling the wheat grain-
filling, using the Gompertz model [5].
        In our case, population P1 would correspond to an early population,
starting to produce and reaching the maximum number of commercial
“calçots” earlier than P2 and P3 (Figure 1). Population P2 would represent a
late population, as the maximum number of commercial “calçots” appears 18
weeks after planting coinciding with the usually maximum consumers
demand. Furthermore, its average production of 8.62 commercial “calçots” is
very high. Population P3 showed the lowest yield and the highest growth rate.




            Figure 1. Average curves of commercial “calçots” evolution for each
                                     population
       The biological reasons underlying the good adjustment of the model
would be a combination of genetic factors determining the potential number of
resprouts, onion size, earliness in sprouting and cold resistance, altogether with
environmental factors affecting the phenotypic expression of this traits, such
as temperature and water availability during the culture.
4                                       Template for the oral communications
4.       Conclusions
            The modified Gompertz model fits properly (R2min,individual=0.79) to the
     individual evolution of each plant and also suggests a biologic meaning for the
     differences found between plants and populations.
            As differences have been established between populations, the
     information given by the model could be used to identify or create
     complementary populations. This would be very useful to design a planting
     strategy ensuring a “calçots” production parallel to the expected consumer’s
     demand along the season.
5.       Contact
     Address:
                                  Marçal Plans Pujolràs
                Departement d’Enginyeria Agroalimentaria i Biotecnologia.
                           Universitat Politècnica de Catalunya
                              Avda. del canal Olímpic, S/N
                                   08860 Castelldefels
                                          Spain
     Telephone: (+34) 93-5521226
     e-mail: marcal.plans@upc.edu
     www: http://www.esab.upc.edu/
6.       Bibliography
     [1] Zwietering, M. H. et al. (1990) Modeling of the bacterial-growth curve.
     Appl. Environ. Microbiol, 56, (6) 1875.
     [2] Bates, D. M. and Chambers, J. M. (1992) Nonlinear models. Chapter 10 of
     Statistical Models in S eds J. M. Chambers and T. J. Hastie, Wadsworth &
     Brooks/Cole
     [3] R Development Core Team (2011). R: A language and environment for
      statistical computing. R Foundation for Statistical Computing,
      Vienna, Austria. URL http://www.R-project.org/.
     [4] Felipe de Mendiburu (2010). Agricolae: Statistical Procedures for
     Agricultural Research. R package version 1.0-9. http://CRAN.R-
     project.org/package =agricolae
     [5] Yin, X. et al. J. (2003). A flexible signoid function of determinate growth.
     Annals of Botany, 91, 361-371.

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Modelling Calçot Production By Means Of Gompertz Equation

  • 1. 1 Modelling “calçots” production by means of Gompertz equation M. Plans1*, J. Simó1 , F.Casañas1, J.Sabaté1 * marcal.plans@upc.edu,1 Departament d’Enginyeria Agroalimentària i Biotecnologia, Universitat Politècnica de Catalunya Abstract “Calçots”, the second-year onion resprouts, are produced from November to May. Plants are harvested individually when an acceptable amount of “calçots” reach the commercial size. In order to optimize the culture management a modified Gompertz equation was used to model the commercial “calçots” production. Prediction of plant yield evolution appeared enough good to establish significant differences between the three populations checked. Keywords: onion, sigmoid, yield. 1. Introduction “Calçots” are the second-year onion resprouts of the “Ceba Blanca Tardana de Lleida” landrace. In “calçots” production all the resprouts from one onion are harvested at the same time when an acceptable amount of “calçots” (≥50%) reach the commercial size (1.7 cm – 2.5 cm in diameter and 20 cm in length, according to the Protected Geographical Indication “Calçot de Valls” regulations). Each onion yields between 1 and 20 “calçots”, but their thickness is negatively correlated with the number of “calçots” per onion, so in the most productive onions many “calçots” never reach the commercial requirements. The production lasts from mid-November to the end of April, and a more or less constant release of marketable product is needed during this period. As there is genetic variability in earliness, farmers use combinations of genotypes and/or planting dates to adjust the production to the consumers demand but these combinations are made quite inefficiently. An optimum management of the crop would require a deep knowledge and precise monitoring of the growth dynamics. Biological systems modelling allows predicting development, to determine the critical points and to optimize processes [1]. Our objectives are: i) to model the commercial “calçots” production in a population and ii) to compare the checked populations, in order to improve the culture management. 2. Material and methods One hundred onions of three different populations were monitored plant by plant. During seven months, the number of commercial “calçots” in each onion was scored every two weeks. XIII Conferencia Española y III Encuentro Iberoamericano de Biometría CEIB2011 7 a 9 de septiembre de 2011 Barcelona
  • 2. 2 Template for the oral communications The data recorded in the three populations suggested that the evolution of the number of commercial “calçots” (y) can be described by a sigmoid function which shows three phases corresponding to latency, growth and steady state phase. This function requires three parameters: the lag time (λ), the maximum growth rate (µmax) and the asymptotic value for long time (A), in the same way that bacterial growth was described by Gompertz and modified by Zwietering (Table 1)[1]. Table 1. Original and modified Gompertz equations for bacterial growth. Gompertz Equation Modified Gompertz Equation    ·e  y  a·exp   exp  b  c·x   y  A·exp   exp  max ·   t   1    A  Nonlinear least squares, determined using Gauss-Newton algorithm [2], were used to estimate the parameters of modified Gompertz equation for each plant. A One-Way ANOVA has been used in search of statistical significant differences between the three populations for the three fitting parameters (λ, µmax, A ). Computations were carried out by R-program [3] and Agricolae packages [4]. Plants that did not reach four commercial “calçots” at the end of the season were discarded as this number is not sufficient to show trends in the model. Anywhere, in a next future such unproductive onions will not be present in the new varieties that are being obtained by breeding. 3. Results and discussion Significant differences occurred between populations referring to the mean values for λ . For µmax population P1 and P2 were significantly different from P3, and for parameter A population P2 was significantly different from P3 (Table 2). The variation into population estimated by means of the standard deviation is due to genetic and environmental differences between plants and are those expected in a population of an allogamous open pollinated landrace. The new improved varieties obtained from these and other populations will decrease their internal variability as breeding processes tend to increase the frequencies of the favourable alleles and concentrate the phenotypes around the mean.
  • 3. 3 Table 2. Mean values (± SE of the mean) of the parameters for each population Population λ (week) µmax (week-1) A R2 P1 4.55c * ± 0.39 2.25b ± 0.27 7.97ab ± 0.41 0.970 ± 0.002 P2 5.98b ± 0.33 1.87b ± 0.12 8.62a ± 0.38 0.978 ± 0.002 P3 7.50a ± 0.51 3.24a ± 0.60 6.87b ± 0.39 0.972 ± 0.003 *Mean values in a column followed by a different letter are significantly different (p≤0.05) with the LSD test. The goodness of the model adjustment estimated in each population (R2) is similar to the one reported by Yin when modelling the wheat grain- filling, using the Gompertz model [5]. In our case, population P1 would correspond to an early population, starting to produce and reaching the maximum number of commercial “calçots” earlier than P2 and P3 (Figure 1). Population P2 would represent a late population, as the maximum number of commercial “calçots” appears 18 weeks after planting coinciding with the usually maximum consumers demand. Furthermore, its average production of 8.62 commercial “calçots” is very high. Population P3 showed the lowest yield and the highest growth rate. Figure 1. Average curves of commercial “calçots” evolution for each population The biological reasons underlying the good adjustment of the model would be a combination of genetic factors determining the potential number of resprouts, onion size, earliness in sprouting and cold resistance, altogether with environmental factors affecting the phenotypic expression of this traits, such as temperature and water availability during the culture.
  • 4. 4 Template for the oral communications 4. Conclusions The modified Gompertz model fits properly (R2min,individual=0.79) to the individual evolution of each plant and also suggests a biologic meaning for the differences found between plants and populations. As differences have been established between populations, the information given by the model could be used to identify or create complementary populations. This would be very useful to design a planting strategy ensuring a “calçots” production parallel to the expected consumer’s demand along the season. 5. Contact Address: Marçal Plans Pujolràs Departement d’Enginyeria Agroalimentaria i Biotecnologia. Universitat Politècnica de Catalunya Avda. del canal Olímpic, S/N 08860 Castelldefels Spain Telephone: (+34) 93-5521226 e-mail: marcal.plans@upc.edu www: http://www.esab.upc.edu/ 6. Bibliography [1] Zwietering, M. H. et al. (1990) Modeling of the bacterial-growth curve. Appl. Environ. Microbiol, 56, (6) 1875. [2] Bates, D. M. and Chambers, J. M. (1992) Nonlinear models. Chapter 10 of Statistical Models in S eds J. M. Chambers and T. J. Hastie, Wadsworth & Brooks/Cole [3] R Development Core Team (2011). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/. [4] Felipe de Mendiburu (2010). Agricolae: Statistical Procedures for Agricultural Research. R package version 1.0-9. http://CRAN.R- project.org/package =agricolae [5] Yin, X. et al. J. (2003). A flexible signoid function of determinate growth. Annals of Botany, 91, 361-371.