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Sensitive Cell-based And Biochemical Assays Using                                                                                                          Epic ®                Label-free
                                                                                              Technology On The EnSpire  ® Multimode Plate Reader

                                                                                              Heidi Morgan, M.S., Janet Park-Bewsher, Paul Butler, Tim Cloutier, Ph.D.



    1         Abstract                                                                           2         EnSpire Label-free Cell-Based Assays                                         3        EnSpire Label-free Biochemical Assays                                                       4      EnSpire Label-free Is Both Sensitive
Here we show how the PerkinElmer EnSpire®                                                     To demonstrate that the EnSpire label-free platform yields                            Below, we use the EnSpire label-free instrument to analyze                                                      & Non-Invasive
                                                                                              comparable data to the Corning® Epic® label-free system and                           direct binding interactions between Carbonic Anhydrase II (30
Multimode Plate Reader with Corning® Epic® label-
                                                                                              provides a powerful complementary assay platform relative to                          kDa) and a set of small molecule compounds ranging from 157
free technology can be used in 96- and 384-well                                               labeled technologies, we performed a comparative analysis to                          to 350 Daltons. The saturation binding curve KD values for all
microplate formats to non-invasively identify and                                             the Epic® system and labeled technologies for multiple GPCR                           interactions are consistent with Epic label-free generated data
characterize multiple G protein-coupled receptor                                              signaling pathways and protein:protein and protein:small                              and previously published studies (Myszka, D.G. Analysis of
(GPCR) pathways in living cells using an orthogonal                                           molecule biomolecular interactions. Our results show the                              small-molecule interactions using Biacore S51 technology. Anal.
                                                                                              EnSpire label-free platform compares favorably to the Epic®                           Biochem. 329, 316-323 (2004).).These results indicate that the
approach. Furthermore, this orthogonal platform                                               system in terms of sensitivity and detection, while                                   EnSpire label-free system generates reproducible and high-
enables the use of both label-free and labeled                                                simultaneously showing high correlation to published                                  quality information for protein:small molecule interactions.
technologies to comprehensively identify and                                                  pharmacological and binding data with several labeled assays.
characterize target and ligand behavior in both cell-                                                                                                                                                         Molecular       EnSpire        EnSpire         Epic          Biacore**
based and biochemical assays, with greater                                                                                                                                                 Compound
                                                                                                                                                                                                              Weight (Da)       Z’           KD [nM]        KD [nM]         KD [nM]

confidence. By successfully monitoring the ligand-                                                                                                                                  Benzenesulfonamide             157          0.72           880         Not Tested         848

induced dynamic mass redistribution (DMR) in living                                                                                                                                 Carbachol                      183       No Binding    No Binding      Not Tested     Not Tested
cells and the ligand-dependent response                                                                                                                                             4-Carboxybenzene
interrogating protein:protein and protein:small                                                                                                                                     sulfonamide (CBS)
                                                                                                                                                                                                                   201          0.52           615             700            893
                                                                                                                                                                                                                                                                                          Target Signal Sensitivity: Agonist          The EnSpire label-free platform imposed
molecule biomolecular interactions, we demonstrate                                                                                                                                  Acetazolamide                  222       Not Tested         55             27              19         Activation Using the EnSpire Label-free     no detrimental effects to cell viability
                                                                                                                                                                                                                                                                                          Platform used to calculate Z’. The          subsequent to the label-free scans as
that this label-free technology is a comprehensive                                                                                                                                  Dansylamide                    250       Not Tested        701             513            760         sensitivity is such that partial and full   demonstrated with the ATPlite®
and versatile tool for GPCR research enabling the                                                                                                                                   Furosemide                     330          0.51           787             550            513         agonists can be detected using label-free   cytotoxicity assay. Experiment was
generation of physiologically-relevant data.                                                                                                                                        (±)-Sulpiride                  341          0.50            89*            29*            186*
                                                                                                                                                                                                                                                                                          technology as well as inverse and full      conducted with A431 endogenous cells.
                                                                                                                                                                                                                                                                                          antagonists (data not shown).
                                                                                                                                                                                    *Concentration in µM
                                                                                                                                                                                    **Myszka, D.G. Analysis of small-molecule interactions using Biacore S51 technology. Anal. Biochem.
                                                                                                                                                                                    329, 316-323 (2004)


                                                                                              Human epidermoid carcinoma A431, Chinese Hamster Ovary                                The initial step in the biochemical assay protocol involves immobilization of
                                                                                              (CHO-K1), human astrocytoma 1321N1, and Human Embryonic                               the target onto the amine-coupling surface of the EnSpire label-free                                     6      The EnSpire Label-free Platform Offers:
                                                                                                                                                                                    biochemical microplate biosensor. (The reference area of the biosensor
                                                                                              Kidney 293 (HEK293) cells were used to test agonist and                               prevents non-specific target immobilization.) Next, the unbound target is
                                                                                              antagonist activity of either endogenously or recombinantly                           washed away followed by further equilibration of the biosensor and the initial
                                                                                                                                                                                                                                                                                          • More fully characterized information about both
                                                                                              expressed GPCR receptors, including Adrenergic-β2 (β2AR),                             baseline read. Finally, the analyte is added to the immobilized target enabling                       cellular and biochemical systems
                                                                                              Muscarinic 1 (M1), Opioid Mu (OP3), Purinergic P2Y11 and                              the final read. Relative to adjacent well referencing utilized by other label-free                    • Pathway-independent analysis & non-invasive, more
                                                                                              Adenosine A1, using the EnSpire with label-free technology and                        instruments, the EnSpire label-free platform self-referencing technology
                                                                                              several leading labeled cAMP and Ca2+ detection technologies.                         delivers data with lower variability and eliminates the need to assign                                physiologically relevant data
                                                                                                                                                                                    reference wells.                                                                                      • Ability to study difficult targets or weak biological
                                                         Cell-Based Assays                                                                                                                                                                                                                interactions
                                                         Epic® technology measures                                                                                                                                                                                                        • Highly sensitive, robust monitoring of direct
                                                         changes in light refraction
                                                         resulting from dynamic mass
                                                                                                                                                                                                                                                                                          protein:ligand binding events especially those weak
                                                         redistribution (DMR) within the                                                                                                                                                                                                  interactions that would be difficult to detect using
                                                         cell which occurs in response to                                                                                                                                                                                                 labeled assays.
                                                         receptor activation or
                                                         deactivation in a zone within the
                                                                                                                                                                                                                                                                                          • Direct monitoring of small molecule binding to an
                                                         cell’s monolayer. The change is                                                                                                                                                                                                  immobilized protein with extremely high sensitivity.
                                                         indicated by a change in                                                                                                                                                                                                         • Reduced cost and time required for assay
                                                         wavelength.
                                                                                                                                                                                                                                                                                          development for most targets by applying a label-free
                                                                                                                                                                                                                                                                                          strategy as described.
                                                          Biochemical Assays                                                                                                                                                                                                              • Robust measurement of small molecule binding
                                                          Label-free biochemical assays                                                                                                                                                                                                   ranging from 157 Da to 350 Da with KD values
                                                          measure changes in the index of
                                                          refraction upon a binding event.                                                                                                                                                                                                comparable to published Biacore® SPR data. This
                                                          As in cellular assays, the                                                                                                                                                                                                      observation indicates that in situations where SPR
                                                          change is indicated by a shift in                                                                                                                                                                                               becomes a throughput bottleneck in the biophysical
                                                          wavelength.
                                                                                                                                                                                                                                                                                          process, use of the plate-based EnSpire with Epic®
                                                                                                                                                                                                                                                                                          label-free technology for studies based on KD prior to
                                                                                                                                                                                                                                                                                          SPR, will reduce the sample backlog of ka and kd ‘s
                                                                                               Agonist and antagonist dose-response curves and assay robustness for Gs, Gq and Gi                                                                                                         leading to a more efficient workflow.
                                                                                                                                                                                        Clear and concentration-dependant dose response curves for each small molecule
                                                                                               pathways (β2AR , A1, Mu Opioid, M1) using EnSpire with label-free technology.            binding to immobilized Carbonic Anhydrase II.
Corning and Epic are registered trademarks of Corning Incorporated. .


                                                                                                                                                                                                                         PerkinElmer, Inc., 940 Winter Street, Waltham, MA USA (800) 762-4000 or (+1) 203 925-4602 www.perkinelmer.com

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SBS 2011: Sensitive Cell-based and Biochemical Assays Using Epic(R) Label-free technology on the EnSpire(R) Multimode Plate Reader

  • 1. Sensitive Cell-based And Biochemical Assays Using Epic ® Label-free Technology On The EnSpire ® Multimode Plate Reader Heidi Morgan, M.S., Janet Park-Bewsher, Paul Butler, Tim Cloutier, Ph.D. 1 Abstract 2 EnSpire Label-free Cell-Based Assays 3 EnSpire Label-free Biochemical Assays 4 EnSpire Label-free Is Both Sensitive Here we show how the PerkinElmer EnSpire® To demonstrate that the EnSpire label-free platform yields Below, we use the EnSpire label-free instrument to analyze & Non-Invasive comparable data to the Corning® Epic® label-free system and direct binding interactions between Carbonic Anhydrase II (30 Multimode Plate Reader with Corning® Epic® label- provides a powerful complementary assay platform relative to kDa) and a set of small molecule compounds ranging from 157 free technology can be used in 96- and 384-well labeled technologies, we performed a comparative analysis to to 350 Daltons. The saturation binding curve KD values for all microplate formats to non-invasively identify and the Epic® system and labeled technologies for multiple GPCR interactions are consistent with Epic label-free generated data characterize multiple G protein-coupled receptor signaling pathways and protein:protein and protein:small and previously published studies (Myszka, D.G. Analysis of (GPCR) pathways in living cells using an orthogonal molecule biomolecular interactions. Our results show the small-molecule interactions using Biacore S51 technology. Anal. EnSpire label-free platform compares favorably to the Epic® Biochem. 329, 316-323 (2004).).These results indicate that the approach. Furthermore, this orthogonal platform system in terms of sensitivity and detection, while EnSpire label-free system generates reproducible and high- enables the use of both label-free and labeled simultaneously showing high correlation to published quality information for protein:small molecule interactions. technologies to comprehensively identify and pharmacological and binding data with several labeled assays. characterize target and ligand behavior in both cell- Molecular EnSpire EnSpire Epic Biacore** based and biochemical assays, with greater Compound Weight (Da) Z’ KD [nM] KD [nM] KD [nM] confidence. By successfully monitoring the ligand- Benzenesulfonamide 157 0.72 880 Not Tested 848 induced dynamic mass redistribution (DMR) in living Carbachol 183 No Binding No Binding Not Tested Not Tested cells and the ligand-dependent response 4-Carboxybenzene interrogating protein:protein and protein:small sulfonamide (CBS) 201 0.52 615 700 893 Target Signal Sensitivity: Agonist The EnSpire label-free platform imposed molecule biomolecular interactions, we demonstrate Acetazolamide 222 Not Tested 55 27 19 Activation Using the EnSpire Label-free no detrimental effects to cell viability Platform used to calculate Z’. The subsequent to the label-free scans as that this label-free technology is a comprehensive Dansylamide 250 Not Tested 701 513 760 sensitivity is such that partial and full demonstrated with the ATPlite® and versatile tool for GPCR research enabling the Furosemide 330 0.51 787 550 513 agonists can be detected using label-free cytotoxicity assay. Experiment was generation of physiologically-relevant data. (±)-Sulpiride 341 0.50 89* 29* 186* technology as well as inverse and full conducted with A431 endogenous cells. antagonists (data not shown). *Concentration in µM **Myszka, D.G. Analysis of small-molecule interactions using Biacore S51 technology. Anal. Biochem. 329, 316-323 (2004) Human epidermoid carcinoma A431, Chinese Hamster Ovary The initial step in the biochemical assay protocol involves immobilization of (CHO-K1), human astrocytoma 1321N1, and Human Embryonic the target onto the amine-coupling surface of the EnSpire label-free 6 The EnSpire Label-free Platform Offers: biochemical microplate biosensor. (The reference area of the biosensor Kidney 293 (HEK293) cells were used to test agonist and prevents non-specific target immobilization.) Next, the unbound target is antagonist activity of either endogenously or recombinantly washed away followed by further equilibration of the biosensor and the initial • More fully characterized information about both expressed GPCR receptors, including Adrenergic-β2 (β2AR), baseline read. Finally, the analyte is added to the immobilized target enabling cellular and biochemical systems Muscarinic 1 (M1), Opioid Mu (OP3), Purinergic P2Y11 and the final read. Relative to adjacent well referencing utilized by other label-free • Pathway-independent analysis & non-invasive, more Adenosine A1, using the EnSpire with label-free technology and instruments, the EnSpire label-free platform self-referencing technology several leading labeled cAMP and Ca2+ detection technologies. delivers data with lower variability and eliminates the need to assign physiologically relevant data reference wells. • Ability to study difficult targets or weak biological Cell-Based Assays interactions Epic® technology measures • Highly sensitive, robust monitoring of direct changes in light refraction resulting from dynamic mass protein:ligand binding events especially those weak redistribution (DMR) within the interactions that would be difficult to detect using cell which occurs in response to labeled assays. receptor activation or deactivation in a zone within the • Direct monitoring of small molecule binding to an cell’s monolayer. The change is immobilized protein with extremely high sensitivity. indicated by a change in • Reduced cost and time required for assay wavelength. development for most targets by applying a label-free strategy as described. Biochemical Assays • Robust measurement of small molecule binding Label-free biochemical assays ranging from 157 Da to 350 Da with KD values measure changes in the index of refraction upon a binding event. comparable to published Biacore® SPR data. This As in cellular assays, the observation indicates that in situations where SPR change is indicated by a shift in becomes a throughput bottleneck in the biophysical wavelength. process, use of the plate-based EnSpire with Epic® label-free technology for studies based on KD prior to SPR, will reduce the sample backlog of ka and kd ‘s Agonist and antagonist dose-response curves and assay robustness for Gs, Gq and Gi leading to a more efficient workflow. Clear and concentration-dependant dose response curves for each small molecule pathways (β2AR , A1, Mu Opioid, M1) using EnSpire with label-free technology. binding to immobilized Carbonic Anhydrase II. Corning and Epic are registered trademarks of Corning Incorporated. . PerkinElmer, Inc., 940 Winter Street, Waltham, MA USA (800) 762-4000 or (+1) 203 925-4602 www.perkinelmer.com