http://slideshare.net/cameronneylon
Who is this guy anyway?
mic
  ade
Ac




     Who is this guy anyway?
mic
  ade
Ac
                      ogist
                 Biol



     Who is this guy anyway?
mic
  ade
Ac
                      ogist
                 Biol



     Who is this guy anyway?
                          C...
mic
  ade
Ac
                      ogist
                 Biol



     Who is this guy anyway?
                           ...
mic                   No
  ade                            t an
Ac                                      eng
               ...
mic                            No
  ade                                     t an
Ac                                       ...
mic                            No
  ade                                     t an
Ac                                       ...
mic                              No
  ade                                       t an
Ac                                   ...
mic                                       No
  ade                                                t an
Ac                 ...
Please suspend disbelief...

                      
 
 - security
                      
 
 - IP
                      
 
...
In the last five years...?




http://flickr.com/photos/stewart/461099066/
...in the past 24 hours?
http://www.flickr.com/photos/nbachiyski/2186228572/
...is to the fully integrated
     laboratory record...
as...
is to...
The Lab that was Born on the
            Web
        Cameron Neylon
The premise....
    Most of what is needed to build a fully
integrated laboratory recording system can be
   found, for fr...
Lab book as a journal...




http://www.flickr.com/photos/nbachiyski/2186228572/
Blog as journal...
Description, date
categorisation,
objects, identity,
accessibility...

...not of much
interest to most
people
http://biolab.isis.rl.ac.uk/projects/blog/
Automatic Blogging by Machines
Integration and communication
http://biolab.isis.rl.ac.uk/projects/blog/
Procedure            Experiment



Material               Sample


                                             Data

 Dat...
Procedure              Experiment



Material                 Sample
 Material                 Sample
  Material          ...
Schema?

Stuff gets combined with other stuff and
 stuff is done to it to make more stuff.


   (Meaning can be layered on...
Data                                             Data
                                            Data
                   ...
Data                                             Data
                                            Data
                   ...
Data services




...get someone else to do the heavy lifting...
Good data services will...
    Provide a URL endpoint for any item



    Will understand your data type enough...





...
Data                                             Data
                                            Data
                   ...
Data                                         Data


 Samples can be offloaded...           Data
                          ...
Data                                             Data

 Procedures are just documents...           Data
                  ...
Measuring solubility
http://onschallenge.wikispaces.com/Exp026
http://tinyurl.com/ons-challenge-spreadsheet
http://oru.edu/cccda/sl/descriptorspace/ds.php
http://oru.edu/cccda/sl/descriptorspace/ds.php
http://slurl.com/secondlife/Drexel/165/178/24
If we push it all out to other services...
...what are we left with?
Time
The feed of links between resources




                         Time
How do you capture this?
Lane    Sample       uL
   1    [[DNA:%]] [[box]]
   2    [[DNA:%]] [[box]]
   3    [[DNA:%]] [[box]]



[[Section>Procedu...
Lane    Sample       uL
   1    [[DNA:%]] [[box]]
   2    [[DNA:%]] [[box]]
   3    [[DNA:%]] [[box]]



[[Section>Procedu...
Lane    Sample       uL
   1    [[DNA:%]] [[box]]
   2    [[DNA:%]] [[box]]
   3    [[DNA:%]] [[box]]



[[Section>Procedu...
A framework. Not a system.
Standardize the connections
Not the end points
The architecture is already in place


      The standards already exist


There is a massive infrastructure in place


Us...
“If my business model was based on control
I’d be getting real worried right about now”

John Wilbanks,Vice President, Sci...
...delivery of information to the
  right place, at the right time...
The future will be about
leveraging other people’s data
Less “integration”. More “linking”.
Jeremy Frey
Jenny Hale
Andrew Milsted
                      Southampton development team
Simon Coles
Steve Wilson
Mark Bor...
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
The lab that was born on the web
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The lab that was born on the web

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Talk given to SMi Electronic Lab Notebook conference in London, 29 January 2009. The talk focusses on the idea of what a web native lab notebook would look like and proposes that it would be a feed of relationships between digital objects.

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The lab that was born on the web

  1. 1. http://slideshare.net/cameronneylon
  2. 2. Who is this guy anyway?
  3. 3. mic ade Ac Who is this guy anyway?
  4. 4. mic ade Ac ogist Biol Who is this guy anyway?
  5. 5. mic ade Ac ogist Biol Who is this guy anyway? Che mis t
  6. 6. mic ade Ac ogist Biol Who is this guy anyway? Che mis t tist en Sci
  7. 7. mic No ade t an Ac eng ine ogist er ol Bi Who is this guy anyway? Che mis t tist en Sci
  8. 8. mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che mis t tist en Sci
  9. 9. mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che mis t der co tist ta en No Sci
  10. 10. mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che mis t pen ta/O ate Da oc der pen e adv co O tist ta ienc en No Sc Sci
  11. 11. mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che Pra mis gm t atis pen t ta/O ate Da oc der pen e adv co O tist ta ienc en No Sc Sci
  12. 12. Please suspend disbelief... - security - IP - regulatory issues ...I will come back to them http://www.flickr.com/photos/nihilenz/2545518545
  13. 13. In the last five years...? http://flickr.com/photos/stewart/461099066/
  14. 14. ...in the past 24 hours?
  15. 15. http://www.flickr.com/photos/nbachiyski/2186228572/
  16. 16. ...is to the fully integrated laboratory record...
  17. 17. as...
  18. 18. is to...
  19. 19. The Lab that was Born on the Web Cameron Neylon
  20. 20. The premise.... Most of what is needed to build a fully integrated laboratory recording system can be found, for free, in existing web services... (it does lack a little polish admittedly) It just needs to be wired up (that’s a big “just”)
  21. 21. Lab book as a journal... http://www.flickr.com/photos/nbachiyski/2186228572/
  22. 22. Blog as journal...
  23. 23. Description, date categorisation, objects, identity, accessibility... ...not of much interest to most people
  24. 24. http://biolab.isis.rl.ac.uk/projects/blog/
  25. 25. Automatic Blogging by Machines
  26. 26. Integration and communication
  27. 27. http://biolab.isis.rl.ac.uk/projects/blog/
  28. 28. Procedure Experiment Material Sample Data Data Data Analysis Analysis
  29. 29. Procedure Experiment Material Sample Material Sample Material Sample Data Data Data Data Data Analysis Analysis
  30. 30. Schema? Stuff gets combined with other stuff and stuff is done to it to make more stuff. (Meaning can be layered on later according to specific needs)
  31. 31. Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time
  32. 32. Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time
  33. 33. Data services ...get someone else to do the heavy lifting...
  34. 34. Good data services will... Provide a URL endpoint for any item  Will understand your data type enough...  ...to provide simple embed codes and more sophisticated re-packaging where required Handle versioning, identity, date stamps,  provenance, security, etc...
  35. 35. Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time
  36. 36. Data Data Samples can be offloaded... Data Data Data Data Analysis Procedure Procedure Analysis LIMS, Database, Blog, Wiki, Spreadsheet... Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time
  37. 37. Data Data Procedures are just documents... Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time
  38. 38. Measuring solubility
  39. 39. http://onschallenge.wikispaces.com/Exp026
  40. 40. http://tinyurl.com/ons-challenge-spreadsheet
  41. 41. http://oru.edu/cccda/sl/descriptorspace/ds.php
  42. 42. http://oru.edu/cccda/sl/descriptorspace/ds.php
  43. 43. http://slurl.com/secondlife/Drexel/165/178/24
  44. 44. If we push it all out to other services...
  45. 45. ...what are we left with?
  46. 46. Time
  47. 47. The feed of links between resources Time
  48. 48. How do you capture this?
  49. 49. Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]]
  50. 50. Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]]
  51. 51. Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]]
  52. 52. A framework. Not a system.
  53. 53. Standardize the connections
  54. 54. Not the end points
  55. 55. The architecture is already in place The standards already exist There is a massive infrastructure in place Use whatever tools you(r users) want... ....just provide an accessible endpoint
  56. 56. “If my business model was based on control I’d be getting real worried right about now” John Wilbanks,Vice President, Science Commons
  57. 57. ...delivery of information to the right place, at the right time...
  58. 58. The future will be about leveraging other people’s data
  59. 59. Less “integration”. More “linking”.
  60. 60. Jeremy Frey Jenny Hale Andrew Milsted Southampton development team Simon Coles Steve Wilson Mark Borkum Dave de Roure Jean-Claude Bradley Rajarshi Guha Open Notebook Science Andy Lang Solubility Challenge Antony Williams Egon Willighagen Pierre Lindenbaum
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