The lab that was born on the web

http://slideshare.net/cameronneylon

Who is this guy anyway?

mic ade Ac Who is this guy anyway?

mic ade Ac ogist Biol Who is this guy anyway?

mic ade Ac ogist Biol Who is this guy anyway? Che mis t

mic ade Ac ogist Biol Who is this guy anyway? Che mis t tist en Sci

mic No ade t an Ac eng ine ogist er ol Bi Who is this guy anyway? Che mis t tist en Sci

mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che mis t tist en Sci

mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che mis t der co tist ta en No Sci

mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che mis t pen ta/O ate Da oc der pen e adv co O tist ta ienc en No Sc Sci

mic No ade t an Ac eng Been ine involv ogist er ed ol in an “ Bi ELN” develo pmen t Who is this guy anyway? Che Pra mis gm t atis pen t ta/O ate Da oc der pen e adv co O tist ta ienc en No Sc Sci

Please suspend disbelief... - security - IP - regulatory issues ...I will come back to them http://www.ﬂickr.com/photos/nihilenz/2545518545

In the last ﬁve years...? http://ﬂickr.com/photos/stewart/461099066/

...in the past 24 hours?

http://www.ﬂickr.com/photos/nbachiyski/2186228572/

...is to the fully integrated laboratory record...

is to...

The Lab that was Born on the Web Cameron Neylon

The premise.... Most of what is needed to build a fully integrated laboratory recording system can be found, for free, in existing web services... (it does lack a little polish admittedly) It just needs to be wired up (that’s a big “just”)

Lab book as a journal... http://www.ﬂickr.com/photos/nbachiyski/2186228572/

Blog as journal...

Description, date categorisation, objects, identity, accessibility... ...not of much interest to most people

http://biolab.isis.rl.ac.uk/projects/blog/

Automatic Blogging by Machines

Integration and communication

http://biolab.isis.rl.ac.uk/projects/blog/

Procedure Experiment Material Sample Data Data Data Analysis Analysis

Procedure Experiment Material Sample Material Sample Material Sample Data Data Data Data Data Analysis Analysis

Schema? Stuff gets combined with other stuff and stuff is done to it to make more stuff. (Meaning can be layered on later according to speciﬁc needs)

Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time

Data services ...get someone else to do the heavy lifting...

Good data services will... Provide a URL endpoint for any item  Will understand your data type enough...  ...to provide simple embed codes and more sophisticated re-packaging where required Handle versioning, identity, date stamps,  provenance, security, etc...

Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time

Data Data Samples can be offloaded... Data Data Data Data Analysis Procedure Procedure Analysis LIMS, Database, Blog, Wiki, Spreadsheet... Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time

Data Data Procedures are just documents... Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time

Measuring solubility

http://onschallenge.wikispaces.com/Exp026

http://tinyurl.com/ons-challenge-spreadsheet

http://oru.edu/cccda/sl/descriptorspace/ds.php

http://slurl.com/secondlife/Drexel/165/178/24

If we push it all out to other services...

...what are we left with?

The feed of links between resources Time

How do you capture this?

Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]]

A framework. Not a system.

Standardize the connections

Not the end points

The architecture is already in place The standards already exist There is a massive infrastructure in place Use whatever tools you(r users) want... ....just provide an accessible endpoint

“If my business model was based on control I’d be getting real worried right about now” John Wilbanks,Vice President, Science Commons

...delivery of information to the right place, at the right time...

The future will be about leveraging other people’s data

Less “integration”. More “linking”.

Jeremy Frey Jenny Hale Andrew Milsted Southampton development team Simon Coles Steve Wilson Mark Borkum Dave de Roure Jean-Claude Bradley Rajarshi Guha Open Notebook Science Andy Lang Solubility Challenge Antony Williams Egon Willighagen Pierre Lindenbaum

The lab that was born on the web

by Cameron Neylon on Jan 29, 2009

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