1. DB→RDF →SPARQL
(@yayamamo)
2011.7.23

3. Allie ( )
Allie

4. danmachold

5. ✤
(PubMed 2000 / )
✤
✤
PC: personal computer, primary care, prostate cancer, ...
Alcoholic chronic pancreatitis: ACP, alcoholic CP, ...
Year

6. ✤
(PubMed 2000 / )
✤
✤
PC: personal computer, primary care, prostate cancer, ...
Alcoholic chronic pancreatitis: ACP, alcoholic CP, ...
Year

7. complementary DNA -
cDNA

8. 2000
polymerase chain reaction
PCR
Fourier transform infrared
FTIR
scanning electron microscopy
SEM
MEDLINE
1000

9. Allie
✤
mammalian target of rapamycin /
✤
Neoplasms / ,
✤
mTOR - (1995) Mechanism of action of rapamycin: new insights into the
regulation of G1-phase progression in eukaryotic cells.
✤ ( )
mTOR - PI3K, AMPK, S6K1, ...

10. http://allie.dbcls.jp/

11. ✤ ftp
✤
✤ API
✤ SOAP / REST

13. Allie ?

14. RDF
SPARQL
http://data.allie.dbcls.jp/sparql/

15. SPARQL

16. —
PairCluster
ShortForm LongForm
SPF specific pathogen-free
appearsIn PubMedIDList
contains
CoocurringShort
cooccursWith
PairList FormList
Pair
ShortForm LongForm
SPF specific pathogen-free inResearch
AreaOf
ResearchArea
Pair
ShortForm LongForm
spf specified pathogen free
frequency

19. Domain Object property Range
Pair appearsIn PubMedList
PairCluster contains PairList
Pair cooccursWith CooccurringShortFormList
Pair hasLongFormOf LongForm
PairCluster hasLongFormRepresentationOf LongForm
hasMemberOf
Pair hasShortFormOf ShortForm
PairCluster hasShortFormRepresentationOf ShortForm
Pair inResearchAreaOf ResearchArea

20. 9000
11G ( )
443M (gziped)
134 ( )
—
1400 ( )

21. Virtuoso vs. OWLIM-SE
OpenLink Virtuoso version 06.01.3127, Standard Edition
OWLIM-SE 4.0 / OpenRDF Workbench 2.4.0
Virtuoso OWLIM-SE
50 3
SPARQL
SPARQL ○ ?

22. PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX xsd:<http://www.w3.org/2001/XMLSchema#>
PREFIX allie:<http://purl.org/allie/ontology/201102#>
select distinct ?F ?lfr ?L ?lf where {
[] a allie:PairCluster;
allie:contains [
allie:hasMemberOf [
allie:hasLongFormOf [
rdfs:label ?lf;
allie:frequency ?lfr ];
]];
allie:frequency ?F;
allie:hasShortFormRepresentationOf [ rdfs:label "SPF"@EN ];
allie:hasLongFormRepresentationOf [ rdfs:label ?L ].
FILTER ( lang(?L) = "en" && lang(?lf) = "en" )
}
ORDER BY DESC(xsd:integer(?F)) DESC(xsd:integer(?lfr))

23. PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX xsd:<http://www.w3.org/2001/XMLSchema#>
PREFIX allie: <http://purl.org/allie/ontology/201102#>
select ?SF ?LF ?freq where {
[] a allie:PairCluster;
allie:frequency ?freq;
allie:contains [
allie:hasMemberOf [
allie:hasShortFormOf [
rdfs:label ?SF ];
allie:hasLongFormOf [
rdfs:label ?LF ];
]].
FILTER (xsd:integer(?freq) > 10
&& !regex(?SF,"^s","i")
&& regex(?LF, "^specific", "i"))
}
ORDER BY DESC (xsd:integer(?freq))

24. SPARQL?
✤
✤ Virtuoso
✤

25. ✤ DBCLS
✤
✤