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第2回LinkedData勉強会@yayamamo

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第2回LinkedData勉強会@yayamamo

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第2回LinkedData勉強会で山本が発表した際に利用したプレゼン資料です。 http://allie.dbcls.jp/ および、 http://data.allie.dbcls.jp/sparql/ よろしくお願いします。

第2回LinkedData勉強会で山本が発表した際に利用したプレゼン資料です。 http://allie.dbcls.jp/ および、 http://data.allie.dbcls.jp/sparql/ よろしくお願いします。

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第2回LinkedData勉強会@yayamamo

  1. 1. DB→RDF →SPARQL (@yayamamo) 2011.7.23
  2. 2. Allie ( ) Allie
  3. 3. danmachold
  4. 4. ✤ (PubMed 2000 / ) ✤ ✤ PC: personal computer, primary care, prostate cancer, ... Alcoholic chronic pancreatitis: ACP, alcoholic CP, ... Year
  5. 5. ✤ (PubMed 2000 / ) ✤ ✤ PC: personal computer, primary care, prostate cancer, ... Alcoholic chronic pancreatitis: ACP, alcoholic CP, ... Year
  6. 6. complementary DNA - cDNA
  7. 7. 2000 polymerase chain reaction PCR Fourier transform infrared FTIR scanning electron microscopy SEM MEDLINE 1000
  8. 8. Allie ✤ mammalian target of rapamycin / ✤ Neoplasms / , ✤ mTOR - (1995) Mechanism of action of rapamycin: new insights into the regulation of G1-phase progression in eukaryotic cells. ✤ ( ) mTOR - PI3K, AMPK, S6K1, ...
  9. 9. http://allie.dbcls.jp/
  10. 10. ✤ ftp ✤ ✤ API ✤ SOAP / REST
  11. 11. Allie ?
  12. 12. RDF SPARQL http://data.allie.dbcls.jp/sparql/
  13. 13. SPARQL
  14. 14. — PairCluster ShortForm LongForm SPF specific pathogen-free appearsIn PubMedIDList contains CoocurringShort cooccursWith PairList FormList Pair ShortForm LongForm SPF specific pathogen-free inResearch AreaOf ResearchArea Pair ShortForm LongForm spf specified pathogen free frequency
  15. 15. Domain Object property Range Pair appearsIn PubMedList PairCluster contains PairList Pair cooccursWith CooccurringShortFormList Pair hasLongFormOf LongForm PairCluster hasLongFormRepresentationOf LongForm hasMemberOf Pair hasShortFormOf ShortForm PairCluster hasShortFormRepresentationOf ShortForm Pair inResearchAreaOf ResearchArea
  16. 16. 9000 11G ( ) 443M (gziped) 134 ( ) — 1400 ( )
  17. 17. Virtuoso vs. OWLIM-SE OpenLink Virtuoso version 06.01.3127, Standard Edition OWLIM-SE 4.0 / OpenRDF Workbench 2.4.0 Virtuoso OWLIM-SE 50 3 SPARQL SPARQL ○ ?
  18. 18. PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#> PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX xsd:<http://www.w3.org/2001/XMLSchema#> PREFIX allie:<http://purl.org/allie/ontology/201102#> select distinct ?F ?lfr ?L ?lf where { [] a allie:PairCluster; allie:contains [ allie:hasMemberOf [ allie:hasLongFormOf [ rdfs:label ?lf; allie:frequency ?lfr ]; ]]; allie:frequency ?F; allie:hasShortFormRepresentationOf [ rdfs:label "SPF"@EN ]; allie:hasLongFormRepresentationOf [ rdfs:label ?L ]. FILTER ( lang(?L) = "en" && lang(?lf) = "en" ) } ORDER BY DESC(xsd:integer(?F)) DESC(xsd:integer(?lfr))
  19. 19. PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#> PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX xsd:<http://www.w3.org/2001/XMLSchema#> PREFIX allie: <http://purl.org/allie/ontology/201102#> select ?SF ?LF ?freq where { [] a allie:PairCluster; allie:frequency ?freq; allie:contains [ allie:hasMemberOf [ allie:hasShortFormOf [ rdfs:label ?SF ]; allie:hasLongFormOf [ rdfs:label ?LF ]; ]]. FILTER (xsd:integer(?freq) > 10 && !regex(?SF,"^s","i") && regex(?LF, "^specific", "i")) } ORDER BY DESC (xsd:integer(?freq))
  20. 20. SPARQL? ✤ ✤ Virtuoso ✤
  21. 21. ✤ DBCLS ✤ ✤

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