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Gathering Antimicrobial 
Use Data in Animals 
NIAA Antibiotic Use and Resistance Symposium 
November 13, 2014 
William T. Flynn, DVM, MS 
Center for Veterinary Medicine (CVM) 
U.S. Food and Drug Administration (FDA) 
1
Outline 
 The Need for On-farm Use Data 
 FDA’s Judicious Use Strategy 
 Existing Data on Use and Resistance 
 NARMS Partners and On-farm Use Data 
 NIMBioS 
 Conclusions 
2
The Need for On-farm Use Data 
 Collecting additional information regarding on-farm 
antimicrobial use and resistance is a high priority. 
 Meaningful metrics are needed to assess the 
impacts of different antimicrobial use practices on 
antimicrobial resistance, particularly related to 
stewardship and policy initiatives. 
3
Refining Stewardship Principles 
 Appropriate refinement of principles and regulatory 
policies for promoting antimicrobial stewardship in 
animal agriculture… 
 requires improved understanding of the 
associations between on-farm use and 
resistance… 
 which in turn requires long-term studies capturing 
the range of antimicrobial use patterns and 
resistance across different production classes. 
4
Refining Stewardship Principles 
Long-term 
Studies 
• Long-term studies capturing the range of antimicrobial use 
patterns and resistance across different production classes 
Improved 
Understanding 
• Improved understanding of the associations between on-farm 
use and resistance 
Appropriate 
Action 
• Appropriate refinement of antimicrobial stewardship 
principles and regulatory policies 
5
FDA’s Judicious Use Strategy 
 Policy Objectives: 
 Eliminate the use of medically important antimicrobials 
for production indications (such as “increased rate of 
weight gain” or “improved feed efficiency”) 
 Require veterinary oversight of therapeutic uses of 
these drugs in the feed and water of food-producing 
animals 
 Timeline: 3 years (ends December 12, 2016) 
 Important step towards addressing concerns about the use 
of antimicrobials in food-producing animals 
6
Components of FDA’s Strategy 
 Implement Changes 
 Change labels (remove production claims, require vet oversight) 
 Finalize VFD rule (current target Spring 2015) 
 Report progress 
 Periodic progress reports (every 6 months) 
 Evaluation at end of 3-year implementation period (December 2016) 
 Assess Impacts 
 Continue collecting data (sales and resistance) 
 Collect additional data (on-farm use and resistance) 
 Reinforce Stewardship 
 Perform training/outreach to support new VFD rule 
 Promote judicious use principles 
7
Existing Data on Use and Resistance 
 NARMS: Information on antimicrobial resistance among foodborne pathogens and 
commensal bacteria are reported for retail meats (FDA), animals at slaughter (USDA) 
and humans with clinical disease (CDC) 
 NAHMS: The USDA Animal and Plant Health Inspection Service (USDA-APHIS) 
periodically collects antimicrobial use data on livestock and poultry operations as part of 
the National Animal Health Monitoring System (NAHMS). In addition, samples are 
collected to determine prevalence and characteristics (including antimicrobial resistance) 
of potential foodborne pathogens and commensal bacteria on the farm. 
 ARMS: The USDA Economic Research Service (USDA-ERS) collects data on 
antimicrobial drug use periodically as part of the Agriculture Resource Management 
Surveys (ARMS). 
 U.S. National Residue Program: The USDA-FSIS samples meat, poultry, and egg 
products for chemical contaminants including antimicrobial drugs. 
 ADUFA 105: The FDA collects and reports annual data on the sale and distribution of 
antimicrobial drugs intended for use in food-producing animals aggregated by drug class 
under section 105 of the 2008 Animal Drug User Fee Amendments (ADUFA 105). 
8
July 2012 ANPRM: Overview 
 FDA solicited comments from the public on: 
 possible enhancements to the existing sales data collection 
requirements 
 how best to summarize sales data (within statutory parameters) 
 alternative methods for monitoring antimicrobial use in food-producing 
animals 
 FDA believes that having additional information that 
provides a better understanding of the extent of use of 
medically important antimicrobial drugs in food-producing 
animals will support the implementation of the Agency’s 
Judicious Use Strategy 
9
July 2012 ANPRM: FDA’s Responses 
 Annual Summary Reformat 
 September 2013 ANPRM - proposed additional tables 
 Breakdown by medical importance and route/marketing 
status/presence of production claims 
 Rulemaking 
 Drafting new regulation to codify the ADUFA 105 requirements 
 Considering possible additional requirements 
 Antimicrobial Use 
 Interagency group (FDA/CDC/USDA) formed to explore possible 
approaches for obtaining antimicrobial use data 
10
Ongoing work of interagency group 
1. Mapped the distribution of antimicrobials (medicated feeds 
vs. other products) 
2. Reviewed the literature for analytic approaches that 
associate antimicrobial use and resistance 
3. Surveyed the work other international programs have 
done to relate antimicrobial use and resistance 
4. Submitted a NIMBioS Working Group proposal to develop 
analytic method to evaluate the association between shifts 
in antimicrobial use practices and antimicrobial resistance 
5. Continuing to develop possible approaches for collecting 
on-farm data 
11
Antimicrobial Distribution Channels 
 Antimicrobial distribution channels are 
complex 
Perhaps even more difficult to characterize than 
on-farm use (which would be more useful) 
12
Analytic Approaches Associating 
Antimicrobial Use and Resistance 
 There currently does not appear to be an analytic 
framework available to perform population-level 
analyses of antimicrobial use and resistance 
 Literature: some using in vitro, individual, and local 
scale; Range from purely descriptive to complex 
modeling 
 Other countries: some purely descriptive, a few attempt 
correlations (with methodological questions) 
 The interagency group submitted a NIMBioS 
proposal… 
13
NIMBioS 
 National Institute of Biological and Mathematical 
Synthesis 
 Collaboration between 
 the National Science Foundation 
 the U.S. Department of Homeland Security 
 the U.S. Department of Agriculture 
 Integrating modeling and mathematics with the 
biological studies 
14
NIMBioS Working Groups: Overview 
 Chosen to focus on major well-defined scientific 
questions at the interface between biology and 
mathematics that require insights from diverse 
researchers 
 Typically meet 2-4 times over a 2-year period 
 Participation is by invitation only, but meeting 
summaries are posted publicly 
15
NIMBioS Working Group Proposal 
 Title: “Evaluating the Association between Shifts in 
Antimicrobial Use Practices and Antimicrobial Resistance 
Resulting from FDA’s Risk Mitigation Strategy” 
 Objective: Develop a systems approach to identify specific 
conceptual approaches, analytical methods, and 
quantitative data sources that are appropriate for 
associating population-level changes in antimicrobial use 
in livestock with population-level changes in antimicrobial 
resistance 
 Status: First meeting 9/19/14 – 9/22/14 
16
NIMBioS Working Group Proposal 
 This NIMBioS Working Group will identify specific 
analytical methods and quantitative data that are 
appropriate for associating population-level changes in 
antimicrobial use in livestock with population-level changes 
in antimicrobial resistance 
 The proposed work will identify strategic methods for data 
collection, analysis and synthesis to address research and 
regulatory questions and to efficiently allocate limited 
resources 
 http://www-nimbios.nimbios.org/workinggroups/WG_amr 
17
On-farm Use: Next Steps 
 The Interagency group (FDA, CDC, and USDA) 
are developing possible approaches for enhancing 
current data collection efforts to provide additional 
on-farm information regarding antimicrobial use 
practices and resistance 
 Expect to seek public input on approach in near 
future – potentially through public meeting 
 Goal: start collecting new data in 2016 (before the 
end of GFI 213’s 3-year implementation period) 
18
Conclusions 
 Useful baseline information is currently available on 
antimicrobial drug sales and antimicrobial resistance, but 
limited data are available regarding actual use 
 Collecting additional information to link shifts in on-farm 
antimicrobial use practices with antimicrobial resistance 
data is a high priority 
 A NIMBioS Working Group is developing an analytic 
approach for associating population-level changes in 
antimicrobial use in livestock with population-level changes 
in antimicrobial resistance 
19
CVM AR Websites 
 Judicious Use of Antimicrobials: 
 http://www.fda.gov/AntimicrobialJudiciousUse 
 ADUFA 105 Reports: 
 http://www.fda.gov/AnimalAntimicrobialSales 
 NARMS 
 http://www.fda.gov/NARMS 
20
Thank You 
21

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Dr. William Flynn - Gathering Antimicrobial Use Data in Animals

  • 1. Gathering Antimicrobial Use Data in Animals NIAA Antibiotic Use and Resistance Symposium November 13, 2014 William T. Flynn, DVM, MS Center for Veterinary Medicine (CVM) U.S. Food and Drug Administration (FDA) 1
  • 2. Outline  The Need for On-farm Use Data  FDA’s Judicious Use Strategy  Existing Data on Use and Resistance  NARMS Partners and On-farm Use Data  NIMBioS  Conclusions 2
  • 3. The Need for On-farm Use Data  Collecting additional information regarding on-farm antimicrobial use and resistance is a high priority.  Meaningful metrics are needed to assess the impacts of different antimicrobial use practices on antimicrobial resistance, particularly related to stewardship and policy initiatives. 3
  • 4. Refining Stewardship Principles  Appropriate refinement of principles and regulatory policies for promoting antimicrobial stewardship in animal agriculture…  requires improved understanding of the associations between on-farm use and resistance…  which in turn requires long-term studies capturing the range of antimicrobial use patterns and resistance across different production classes. 4
  • 5. Refining Stewardship Principles Long-term Studies • Long-term studies capturing the range of antimicrobial use patterns and resistance across different production classes Improved Understanding • Improved understanding of the associations between on-farm use and resistance Appropriate Action • Appropriate refinement of antimicrobial stewardship principles and regulatory policies 5
  • 6. FDA’s Judicious Use Strategy  Policy Objectives:  Eliminate the use of medically important antimicrobials for production indications (such as “increased rate of weight gain” or “improved feed efficiency”)  Require veterinary oversight of therapeutic uses of these drugs in the feed and water of food-producing animals  Timeline: 3 years (ends December 12, 2016)  Important step towards addressing concerns about the use of antimicrobials in food-producing animals 6
  • 7. Components of FDA’s Strategy  Implement Changes  Change labels (remove production claims, require vet oversight)  Finalize VFD rule (current target Spring 2015)  Report progress  Periodic progress reports (every 6 months)  Evaluation at end of 3-year implementation period (December 2016)  Assess Impacts  Continue collecting data (sales and resistance)  Collect additional data (on-farm use and resistance)  Reinforce Stewardship  Perform training/outreach to support new VFD rule  Promote judicious use principles 7
  • 8. Existing Data on Use and Resistance  NARMS: Information on antimicrobial resistance among foodborne pathogens and commensal bacteria are reported for retail meats (FDA), animals at slaughter (USDA) and humans with clinical disease (CDC)  NAHMS: The USDA Animal and Plant Health Inspection Service (USDA-APHIS) periodically collects antimicrobial use data on livestock and poultry operations as part of the National Animal Health Monitoring System (NAHMS). In addition, samples are collected to determine prevalence and characteristics (including antimicrobial resistance) of potential foodborne pathogens and commensal bacteria on the farm.  ARMS: The USDA Economic Research Service (USDA-ERS) collects data on antimicrobial drug use periodically as part of the Agriculture Resource Management Surveys (ARMS).  U.S. National Residue Program: The USDA-FSIS samples meat, poultry, and egg products for chemical contaminants including antimicrobial drugs.  ADUFA 105: The FDA collects and reports annual data on the sale and distribution of antimicrobial drugs intended for use in food-producing animals aggregated by drug class under section 105 of the 2008 Animal Drug User Fee Amendments (ADUFA 105). 8
  • 9. July 2012 ANPRM: Overview  FDA solicited comments from the public on:  possible enhancements to the existing sales data collection requirements  how best to summarize sales data (within statutory parameters)  alternative methods for monitoring antimicrobial use in food-producing animals  FDA believes that having additional information that provides a better understanding of the extent of use of medically important antimicrobial drugs in food-producing animals will support the implementation of the Agency’s Judicious Use Strategy 9
  • 10. July 2012 ANPRM: FDA’s Responses  Annual Summary Reformat  September 2013 ANPRM - proposed additional tables  Breakdown by medical importance and route/marketing status/presence of production claims  Rulemaking  Drafting new regulation to codify the ADUFA 105 requirements  Considering possible additional requirements  Antimicrobial Use  Interagency group (FDA/CDC/USDA) formed to explore possible approaches for obtaining antimicrobial use data 10
  • 11. Ongoing work of interagency group 1. Mapped the distribution of antimicrobials (medicated feeds vs. other products) 2. Reviewed the literature for analytic approaches that associate antimicrobial use and resistance 3. Surveyed the work other international programs have done to relate antimicrobial use and resistance 4. Submitted a NIMBioS Working Group proposal to develop analytic method to evaluate the association between shifts in antimicrobial use practices and antimicrobial resistance 5. Continuing to develop possible approaches for collecting on-farm data 11
  • 12. Antimicrobial Distribution Channels  Antimicrobial distribution channels are complex Perhaps even more difficult to characterize than on-farm use (which would be more useful) 12
  • 13. Analytic Approaches Associating Antimicrobial Use and Resistance  There currently does not appear to be an analytic framework available to perform population-level analyses of antimicrobial use and resistance  Literature: some using in vitro, individual, and local scale; Range from purely descriptive to complex modeling  Other countries: some purely descriptive, a few attempt correlations (with methodological questions)  The interagency group submitted a NIMBioS proposal… 13
  • 14. NIMBioS  National Institute of Biological and Mathematical Synthesis  Collaboration between  the National Science Foundation  the U.S. Department of Homeland Security  the U.S. Department of Agriculture  Integrating modeling and mathematics with the biological studies 14
  • 15. NIMBioS Working Groups: Overview  Chosen to focus on major well-defined scientific questions at the interface between biology and mathematics that require insights from diverse researchers  Typically meet 2-4 times over a 2-year period  Participation is by invitation only, but meeting summaries are posted publicly 15
  • 16. NIMBioS Working Group Proposal  Title: “Evaluating the Association between Shifts in Antimicrobial Use Practices and Antimicrobial Resistance Resulting from FDA’s Risk Mitigation Strategy”  Objective: Develop a systems approach to identify specific conceptual approaches, analytical methods, and quantitative data sources that are appropriate for associating population-level changes in antimicrobial use in livestock with population-level changes in antimicrobial resistance  Status: First meeting 9/19/14 – 9/22/14 16
  • 17. NIMBioS Working Group Proposal  This NIMBioS Working Group will identify specific analytical methods and quantitative data that are appropriate for associating population-level changes in antimicrobial use in livestock with population-level changes in antimicrobial resistance  The proposed work will identify strategic methods for data collection, analysis and synthesis to address research and regulatory questions and to efficiently allocate limited resources  http://www-nimbios.nimbios.org/workinggroups/WG_amr 17
  • 18. On-farm Use: Next Steps  The Interagency group (FDA, CDC, and USDA) are developing possible approaches for enhancing current data collection efforts to provide additional on-farm information regarding antimicrobial use practices and resistance  Expect to seek public input on approach in near future – potentially through public meeting  Goal: start collecting new data in 2016 (before the end of GFI 213’s 3-year implementation period) 18
  • 19. Conclusions  Useful baseline information is currently available on antimicrobial drug sales and antimicrobial resistance, but limited data are available regarding actual use  Collecting additional information to link shifts in on-farm antimicrobial use practices with antimicrobial resistance data is a high priority  A NIMBioS Working Group is developing an analytic approach for associating population-level changes in antimicrobial use in livestock with population-level changes in antimicrobial resistance 19
  • 20. CVM AR Websites  Judicious Use of Antimicrobials:  http://www.fda.gov/AntimicrobialJudiciousUse  ADUFA 105 Reports:  http://www.fda.gov/AnimalAntimicrobialSales  NARMS  http://www.fda.gov/NARMS 20