2. A special stain or histochemical stain is a
staining technique by the help of various
chemical reactions to highlight various
individual tissue component once we have
preliminary information from the H&E stain.
3. Indications for special stains
1. Inflammatory lesions
Pyogenic reaction
Gram’s stain for bacteria
Granulomatous reaction
Ziehl Neelsen for Mycobacteria
PAS :Fungus
8. 6.Muscle biopsies
• Enzyme histochemistry( succinic dehydrogenase,
ATPase) : for fibre types
• Methylene blue for motor end plates.
9. 7.Bone marrow
• Reticulin: for fibrosis
• Perls stain: hemosiderin
• Methyl green: plasma cells and immunoblasts
10. Classification
1. Stains for carbohydrates
2. Stains for amyloid
3. Nucleic acid stains
4. Lipid stains
5. Stains for microorganisms
6. Connective tissue stains
7. Stains for pigments andminerals
11. CARBOHYDRATES
SIMPLE CARBOHYDRATES
(molecules composed purely of
carbohydrates)
•Monosaccharides
(glucose,mannose,galactose)
•Oligosaccharides
(sucrose,maltose)
• Polysaccharides
(glycogen,starch)
GLYCOCONJUGATES
(molecules composed of
carbohydrates and other
molecules suchas protein
and lipid)
• Proteoglycans
• Mucins
•Others glycoproteins
12. The carbohydrate component is known as glycosaminoglycans(GAG)
TYPES OF GYCOSAMINOGLYCANS
Chondroitin sulfate
Dermatan sulfate
Keratan sulfate
Heparin sulfate
Heparin
Hyaluronic acid
PROTEOGLYCANS
16. PERIODIC ACID SCHIFF METHOD
1st histochemical use was by McManus for
demonstration of mucin
Reagents – 1. Periodic acid(HIO4)
2. Schiff reagent
0.5-1% solution of periodic acid (oxidant) used for 5-10
minutes oxidation of hydroxyl group within the
carbohydrate formation of two free aldehyde groups
free aldehydes react with schiff
reagent(Chromophores) Bright
red magenta endproduct
18. • Dewax in xylene and rehydrate through graded
ethanols to distilled water.
• Oxidize with periodic acid for 5 minutes.
• Rinse in several changes of distilled water.
• Cover the sections with Schiff reagent for 15
minutes.
• Rinse in running tap water for 5–10 minutes.
• Stain the nuclei with hematoxylin. Differentiate and
blue the sections.
• Dehydrate in graded alcohol and clear with xylene.
• Coverslip.
STEPS
20. Other oxidants like potassium permanganate/ chromic
acid not used – further oxidise aldehyde groups to
carboxylic groups – not reactive to schiff reagent
MILD PAS TECHNIQUE –
0.01% periodic acid used for shorter period for N-acetyl
sialic acid containing mucins as the hydroxyl groups are
highly susceptible to periodic acid oxidation
21. PAS REACTIVE CELLS AND TISSUE COMPONENTS
1.Glycogen
2. Starch
3. Mucin
4. Basement membrane
5. Alpha anti trypsin
6. Reticulin
7. Fungi(capsules)
8. Pancreatic zymogen granules
9. Thyroid colloid
10. Corpora amylacea
11. Russell bodies
22. Diagnosis of several medical conditions:
Glycogen storage disorder
Staining macrophages in Whipple's disease
Mucins in adenocarcinoma of large intestine
Demonstration of fungi
Seminoma,rhabdomyosarcoma,ewing’s sarcoma
contain glycogen
23. • The distinction between mucins and glycogen can be
problematic when using the PAS technique and the
inclusion of a glycogen digestion step is necessary when
the diagnosis requires the correct identification between
these mucosubstances.
• α-Amylase may be used in this situation as it catalyzes
the hydrolysis of the glycosidic bonds of glycogen and the
breakdown of the large glycogen molecules to the water-
soluble disaccharide, maltose.
• The net result is the removal of glycogen from the tissue
section prior to the PAS technique.
PAS with Diastase Resistance
24. 1.Dewax two serial sections in xylene and rehydrate through
graded ethanols to water.
2.Place one slide in the diastase solution for 1 hour at 37°C.
The other slide is an untreated control and may remain in
water for 1 hour.
3.Wash both slides in running tap water for 5–10 minutes.
4.Proceed with the PAS technique.
• Human saliva and Malt Diastase can be used for
enzymatic reaction
STEPS
25. • Glycogen should demonstrate bright red/magenta
staining in the untreated slide. Glycogen staining
should be absent in the diastase treated
slide.
• A known positive control should be included to verify the
potency of the enzyme.
26. Cationic dye.
Alcian blue 8GX –recommended
Comprised of copper containing pthalocyanine ring
linked to 4 isothiouronium groups –strong bases -
account for cationic nature of the dye
Sulfate and carboxylate groups of proteoglycans
ionised at pH 2.5 and carry a negative charge
Sialo- and sulfo mucins also reactive at pH 2.5
So, they stain with alcian blue at pH 2.5
Neutral mucins are not reactive with alcian blue
ALCIAN BLUE METHOD
27. REAGENTS :
1. Alcian blue
2. Aluminium sulfate
3.Nuclear fast red - counterstain
- RESULTS
sulfomucin,sialomucin
Proteoglycans
Hyaluronic acid
Nucleus red
Blue
28. STEPS
• Dewax in xylene and rehydrate through graded
ethanols to distilled water.
• Stain in the alcian blue solution for 30 minutes.
• Rinse in running tap water for 5 minutes.
• Counterstain in nuclear fast red for 10 minutes.
• Wash in running tap water for 1 minute.
• Dehydrate in graded ethanols.
• Clear in xylene and mount in a miscible medium.
30. COMBINED ALCIAN BLUE- PAS TECHNIQUE
PRINCIPLE
Demonstrate presence of mucin
Differentiate acid mucin from neutral mucin
1st stain all acid mucin with alcian blue
(blue)
Those acid mucin which are PAS +ve will not
be stained on PAS reaction only neutral
mucin will bestained(magenta)
“ Pan Mucin Stain”
31. ALCIAN BLUE WITH VARYING ELECTROLYTE
CONCENTRATIONS
This technique is based upon phenomenon known as
CRITICAL ELECTROLYTE CONCENTRATION (CEC)
CEC is defined as point at which amount of electrolyte
such as MgCl2 is sufficient to prevent staining from AB
Competition between cations of salt and dye occurs for
polyanionic sites within tissue
Different acidic carbohydrates have different CEC value
So can differentiate acidic mucins and proteoglycans
32. MUCICARMINE
Active dye molecule is aluminium – carminic acid
complex known asCARMINE
carminic acid produced from dried bodies of female
Coccus Cacti insects
Carmine complex has a positive charge and so attracts
polyanions such as sialomucins and sulfomucins
Useful for identification of adenocarcinoma ( especially
of GIT)
Capsule of fungus – cryptococcus neoformans is also
detected
33. REAGENTS :
1.Southgate’s mucicarmine solution
2.Alcoholic hematoxylin
3.Acidified ferric chloride solution
4.Weigert’s iron hematoxylin solution
5.Metanil yellow solution
RESULTS :
Acidic mucins – deep rose to red
Nuclei –black
Other tissue elements – light yellow
37. AMYLOID
Extracellular , amorphous , eosinophilic
material
Composed of protein in an antiparallel -
pleated sheet configuration
In H&E stain , can be confused with hyaline and
fibrinoid substances
Earliest special stain used for amyloid was
Iodine by Virchow
39. CONGORED STAIN
Acidic dye and composed of 2 identical halves
Each half has a phenyl ring bound to a naphthalene
moiety by a diazo group
2 phenyl groups bound by a diphenyl bond - gives a
linear dye molecule
It stains amyloid by hydrogen bonding and other tissue
components by electrochemicalbonds
Electrochemical staining of other tissues can be
suppressed by –
using alkaline-alcoholic solvents
using competitive inhibition by salt solution
40. 2 factors are important to the congo red-
amyloid reaction
1.Linearity of the dye molecule
2.-pleated sheet configuration of theamyloid
If the spatial configuration of either is altered,
the reaction fails
41. Fixation – Not critical- Carnoy or Alcoholic.
Solution- 0.5 % Congo red in 50% alcohol
0.2% Potassium Hydroxide in 80% alcohol
TECHNIQUE
Counterstain- Meyers hematoxylin
44. ALKALINE CONGO-RED TECHNIQUE
High concentration of NaCl isused
Background electrochemical stainingis
reduced
hydrogen bonding of congo-red to amyloid is
enhanced
45. POLARIZING MICROSCOPY AND CONGO-RED
Under polarized light, congo red stained
amyloid exhibits apple-green birefringence
Most reliable diagnostic test for amyloid
currently
46. POINTS TO REMEMBER
Thickness of section is critical – 8-10 micro meter is
ideal
Too thin section – show faint red color
Too thick section – show yellow birefringent
Other structures giving apple-green birefringence :
1. neurofibrillary tangles of alzheimer’s
2. intracellular inclusions seen in adrenal cortical cells
3. cellulose and chitin
4. dense collagen
Thioflavin T – flourescent method
47. To differentiate AA and AL amyloid :
Section pretreatment with trypsin or
potassium permanganate done
AA amyloid lose their affinity for congo-red
but AL amyloid is resistant
48. METHYL /CRYSTAL VIOLET METHOD
Methyl violet contains a mixture of tetra- , penta- , and
hexa- methyl pararosaniline
Amyloid stained due to selective affinity for one of the
colored fractions
Hence, polychromasia seen
Ammonium oxalate accentuates polychromatic effect
RESULT :
AMYLOID, MUCIN , HYALINE– red-purple
BACKGROUND - blue
49. LIPIDS
SIMPLE LIPIDS
- FATS
- OILS
- WAXES
COMPOUND
LIPIDS
- c/o fatty acids,
alcohol and one
more group such as
phosphorus or
nitrogen
DERIVED LIPIDS
-Derived from
simple or
compound lipids
by hydrolysis
- cholesterol
- Bile acids
50. Lipids with melting point below staining temperature
can be stained with fat stains
So only lipids which are liquid at staining temp. are
stained. Those in solid or crystalline state remains
unaffected
Melting point of a lipid is inversely related to its fatty
acid chain length
Simple lipid is best demonstrated with fresh frozen
sections
Best fixative – Formal calcium (2% calcium acetate +
10% formalin)
51. 1st Sudan dye was Sudan 3
Most sensitive of all fat dyes is – Sudan black B
Sudans must be dissolved in organic solvents to
penetrate fats
Some organic solvents used are –
1. 70% ethanol
2. Isopropanol
3. Propylene glycol
4. Triethyl phosphate
SUDAN BLACK B
52. Sudan black b has 2 fractions –
1st stains neutral fatsblue-black
2nd stains phospholipids gray
54. Gram staining of Bacteria
(MODIFIED BROWN-BRENN METHOD)
Reagents :
(1) Crystal violet stain
(2) Gram’s iodine solution
(3) Ethyl alcohol – acetone solution(decolorizer)
(4) Acetone-xylene solution
(5) Basic Fuchsin- counterstain
(6) Picric acid, 0.1% in acetone
RESULTS :
GRAM POSITIVE BACTERIA – blue
GRAM NEGATIVE BACTERIA – red
NUCLEI –red
OTHER TISSUE ELEMENTS -yellow
55. Dry picric acid is explosive – recommended to
purchase picric acid – acetone solution pre made
Do not allow sections to dry at any point in the
staining process – decolorization will be difficult
and uneven
56. Acid Fast Staining forBacteria
Mycobacteria cannot be demonstrated by gram’s stain
– possess a capsule containing long chain fatty acid
(mycolic acid) that makes them hydrophobic
Can be stained by a strong stain like carbol fuchsin
Fatty capsule resist the removal of stain by acid-
alcohol solution (acid and alcohol fastness)
Mycobacteria are PAS positive due to carbohydrate
content of their cell wall
57. Ziehl Neelson (ZN) stain
Reagents
(1) Carbol fuchsin solution
(2) 1% acid alcohol
(3) 0.1%Methylene blue solution
RESULTS
Acid fast bacilli
Other tissue
Caseous material
bright red
Pale blue
very pale grayishblue
58.
59. Blue counterstain may be patchy if extensive
caseation is present
Avoid over counterstaining – scant organism
can easily be obscured
Decalcification using strong acids may
destroy acid-fastness - so formic acid
recommended
60. MODIFIED FITE TECHNIQUE
REAGENTS :
1. Carbol fuchsin solution
2. 5% sulphuric acid in 25% alcohol
3. Methylene blue solution- counterstain
RESULTS:
M.leprae – bright red
nuclei and other tissue elements – pale blue
61. Fite stain Modified ZN
Uses mixture of xylol & liquid
paraffin prior to stain
Does not use
Incubation in ZN carbolfuchsin at
37ºc for 45 min
Incubation In preheated ZN carbol
fuchsin at 56ºc for 60min
Decolorize with 5% H2SO4 1% acid alcohol. Acid :20%
H2SO4
Demonstrates M leprae M tuberculosis
AFB :Fite vs modified ZN
62. Classification of silver staining techniques:
1. Argentaffin: Fontana Masson for melanin pigments.
2. Argyrophil: Warthin –Starry for spirochetes
AgNOR stain
3. Impregnation: Bodian’s method for nerve fibres
4. Oxidation-reduction
• Grocott’s methenamine silver for fungi(SM)
• Jone’s stain for basement membrane
• Reticulin stain
5. Autometallography Immunogold silver intensification
63. Warthin Starry Method for Spirochetes & Helicobacter
REAGENTS :
1. Acetate buffer pH-3.6
2. 1% silver nitrate
RESULTS :
SPIROCHETES – black
BACKGROUND – golden -yellow
65. FUNGAL STAINS
Fungal cell walls are rich in polysaccharides
which can be converted by oxidation to
dialdehydes
Dialdehydes are then detected by silver
solution
67. Results
Fungi , Pneumocystis, melanin - Black
Mucin & Glycogen - dark grey
Background - Pale green
Hyphae & yeast form - sharply delineated inblack
against green background
70. MISCELLANEOUS STAINS
Cresyl violet acetate method for helicobacter
pylori
Macchiavello’s stain for rickettsia and viral
inclusions
Lendrum’s phloxine – tartrazine stain for viral
inclusions
Giemsa stain for parasites
71. CONNECTIVE TISSUES
Provide a matrix that connects and binds the
cells and organs and ultimately gives support
to the body.
Parent cell is embryonic mesenchyme
72.
73. COLLAGEN FIBRES
1. Masson ‘s trichrome technique
2. Van Gieson’s stain
3. Mallory’s Phosphotungstic Acid
Hematoxylin
4. MSB Technique
5. PAS
6. Heidenhain’s Azan stain
7. lillie’s allochrome method
8. Luxol fast blue G
74. FACTORS AFFECTING TRICHROME STAINING
1. TISSUE PERMEABILITY AND DYE
MOLECULAR SIZE
When protein component of a tissue exposed to a fixative –
insoluble protein networkformed
Structure of the protein network directly related to the
staining reactions
Erythrocyte protein – dense network with small pores
Muscle cells – larger pores
Collagen – least dense network and quite porous
75. 2. Heat :
Increases rate of staining and penetration
3. pH :
LowpH ( 1.5 – 3)
4. Nuclear stain for trichrome
Iron hematoxylin preferred
More resistant to acidity of dye solutions
Alum hematoxylins are decolorized
Can use Celestin blue- alum hematoxylin sequence
76. EFFECT OF FIXATION
10% NBF will not yield optimal results
Treatment of formaldehyde fixed tissue with picric
acid /mercuric chloride solution enhances intensity
and radiance of trichrome
Recommended fixatives are: Bouin’s
Zenker’s,
Formal-mercury
Zinc formalin
77. Demonstrate collagen and muscle in normal tissue
Differentiate collagen and Muscle in tumors
Identify an increase in collagenous tissue
Indicate fibrotic change in cirrhosis of liver
Indicate fibrotic change in pyelonephritis
Distinguish tumors that have arisen from muscle cells
and fibroblasts
Masson ‘s trichrome technique
78. REAGENTS
1. Weigert’s iron hematoxylin
2. Acid fuchsin
3. Glacial acetic acid
4. Phosphomolybdic acid
5. Methyl blue
RESULT
Nuclei – Blue/ Black
Cytoplasm, muscle , RBC → Red
Collagen →Green
81. Gomori’s Reticulintechnique
• Principle: reticulin stains are silver stains based on
argyrophilic properties of reticulin fibres
• MC reticulin stains are Gomori’s and Gordon &
Sweet’s stain
83. • 1st step: Oxidation of hexose sugars in reticulin fibers to
yield aldehydes
• 2nd step: Sensitization: metallic compound like ammonium
sulphate is deposited around reticulin fibres
• Followed by silver impregnation in which an ammoniacal or
diamine silver solution is reduced by the exposed aldehyde
groups to metallic silver
• Further reduction of diamine silver is achieved by
transferring the sections to formaldehyde: this step is called
developing
• The last step is toning by gold chloride in which silver is
replaced by metallic gold and the colour of reticulin fibres
changes from brown to black.
84. • Dewax
• Bring sections to water
• Stain with 0.5% potassium permanganate for 5 min
• Wash with running tap water
• Bleach with 1% oxalic acid for 30 seconds
• Wash with tap water
• Put slide in 2% iron alum for 10 min
85. • Wash with distilled water
• Prepare ammoniacal silver nitrate solution.
• Take 4cc 10% silver nitrate ,add ammonia drop by
drop till precipitate just dissolves, impregnate in
ammoniacal silver nitrate solution for 30 min
• Wash with distilled water
• Reduce in 10 % formalin for 2 min
86. • Wash in water
• Tone in 0.2% gold chloride for 2 min
• Wash with tap water
• Fix in 2% sodium thiosulphate for 3 min
• Counterstain if desired with neutral red.
• Wash, blot, dry, dehydrate and mount in DPX.
87. Results
• Reticulin fibres: black
• Nuclei: black/unstained
• Collagen: if untoned
yellow brown and if
toned purple black
• Other elements:
according to
counterstain
• Control: liver tissue/
lymph node
88. Utility of reticulin stain
• Reticulin fibre network
particularly rich in liver
• Reticulin stain provides
important information
about the architecture
of liver .
• Areas of reticulin
crowding indicate focal
hepatocyte loss.
• When hepatocytes
regenerate, reticulin
fibres show thickening
of hepatic cell plates,
which appear as two or
three-cell thick plates
90. Phosphotungstic acid
hematoxylin:PTAH stain
• To stain connective
tissue
• Control: section of
striated muscle
• Results:
Nuclei and all fibrils:
blue
Cytoplasm: yellow pink
to brown red
Collagen: brown pink
Coarse elastic fibrils:
purple tinge
Mitotic figures: blue
Mitochondria: blue
Striated muscle fibers:
blue
Astrocytes
Amoeba
93. Hemosiderin
Breakdown product of haemoglobin composed of
ferric iron andprotein
Seen as yellow-brown granules
3 methods for demonstration :
1.Perl’s prussian blue reaction – for ferric ion
2. Lillie’s method – for ferrous iron
3.Hukill and putt’s method – for both ferric
and ferrous iron
94. PERL’S STAIN
Principle : unmasking of ferric iron in hydroxide form
by dilute HCl
PRUSSIAN BLUE REACTION –
Ferric Hydroxide + potassium ferrocyanide = Ferric
ferrocyanide (insoluble blue compound)
Reagents
2% aq. Potassium ferrocyanide
2% HCl
Counterstain with 1% neutral red or saffranin
Results
Ferric iron –Blue
Nuclei – Red
95. Best positive control – postmortem lung tissue that
contains a reasonable amount of iron positive
macrophages (heart failurecells)
In Hb and myoglobin , iron bound tightly within protein
complex – cannot be demonstrated by traditional
technique
Treatment with hydrogen peroxide releases iron -
stained withperl’s stain
96.
97. Perl’s Prussian Blue staining for
bone marrow iron
• Grade 4
• Increased marrow iron
stores
98. Calcium
1. Alizarin red S method(MCGee –Russel)
• To demo Ca
• Result: calcium salts: intense red orange
• Background: pale green
2. Von Kossa method
• Aim: to demo Ca
• Principle: indirectly demo Ca phophate, carbonate,
oxalate
• Result: calcium: dark green/black,backgound
depends on counterstain
99.
100. Copper and Lead
• Copper: as in Wilson’s disease,PBC,
• Methods:
1. Mallory & Parker dye-lake method
2. DMABR method
3. Rhodanine technique
4. Rubeanic acid method of Uzman
101. Modified Fouchet’s technique: bile pigment
Demonstrates liver bilepigment
Most common routinemethod
• Reagents
Fouchet ‘s reagent : 25% aq trichloracetic acid
• 10% aq ferric chloride
• RESULT
Muscle : Yellow
Collagen: Red
Bile : Emerald green
103. MELANIN
Normally occur as light brown to black
granules in substantia nigra,hair , skin and
eye
Found Pathologically throughout the body
:benign nevus,malignant melanoma
104. MELANIN DEMONSTRATED BY :
1. Reducing methods : a) Masson fontana silver
technique
b) Schmorl’s ferric-ferricyanide
reduction test
2. Enzyme methods – DOPAreaction
3. Solubility and bleaching characteristics
4. Fluorescent method
5. Immunohistochemistry
105. MASSON FONTANASTAIN
ARGENTAFFIN REACTION – reduction of ammoniacal
silver solution to form metallic silver without the use of
extraneous reducer.
Masson’s method( using fontana’s silver solution) rely
on melanin’s argentaffinproperty
Melanins are blackened by acid silver nitrate solution
RESULT :
Melanin –black
Nuclei - red
106. Schmorl’s ferric-ferricyanide
reduction test
Schmorl reaction – Melanin reduce ferricyanide to
ferrocyanide with production of prussian blue in the
presence of ferric salts
RESULT :
Melanin – dark blue
Nuclei - red
107. NUCLEIC ACIDS
2 nucleic acids are :
1. DNA ( In the nucleus)
2. RNA (In the cytoplasm)
They consist of : Sugar(Deoxyribose / Ribose), Phosphate and
Nitrogenous base
Demonstration of Nucleic acids depends upon either :
1. Reaction of the dyes with the phosphate groups , or ,
2. Production of aldehydes from the sugar (deoxyribose)
No histochemical methods are available to demonstrate the
nitrogenous base
108. 1. Feulgen technique ( demonstrate sugar)
2. Methyl green pyronin technique
(demonstrate phosphate)
3. Acridine orange (by fluorescent method)
4. Gallocyanin-chrome alum method
Demonstra
tes both DNA
and RNA
The last staining method do not separate the 2 nucleic
acids (stains both DNA and RNA blue) and suitable extraction
technique must beused
DNA IS DEMONSTRATED BY
109. FEULGEN STAIN
SOLUTIONS USED ARE :
A) 1M HCL acid - used for acid hydrolysis to break the purine-
deoxyribose bond and yield an aldehyde.
- Done at 60̊ C (HCL should be preheated to 60 ̊C )
- Time (minutes) depends upon the fixative used
- For carnoy’s and formalin – 8 minutes used
B) Schiff reagent - The aldehydes are then demonstrated by
schiff’s reagent
C) Bisulfite solution
RESULT DNA : red-purple
CYTOPLASM : green
111. METHYL GREEN PYRONIN METHOD
Reagents :
1.Methyl green
- impure dye contains methyl violet – removed by
washing with chloroform
- pure methyl green specific for DNA
- NH2 of dye reacts with phosphate of DNA
1.Pyronin
- binds to any negatively charged tissue
constituent
- apart from RNA, binds to acid mucins and
cartilage
RESULTS – DNA : green-blue
RNA : red
113. Special stains enhance detection &
localization of individual tissue component
But should not be substituted for routine H&E
CONCLUSION
114. References
• Bancroft’s theory and practice of histological
techniques 8th edition.
• Ramdas nayak histopathology techniques and their
management, 2018 edition.
• Carleton’s histological technique.
the only argentaffin reaction of importance in histopathology is the reduction of an alkaline solution containing silver diammine in the Masson-Fontana stain, which detects small quantities of melanin and, in suitably fixed tissues, the amines derived from tyrosine and tryptophan: dopamine, noradrenaline, adrenaline and serotonin (6). Most types of melanoma and some tumors of intestinal endocrine cells give positive Masson-Fontana argentaffin reactions (7, 8)
Nucleolar organiser regions (NORs) are defined as nucleolar components containing a set of argyrophilic proteins, which are selectively stained by silver methods. After silver-staining, the NORs can be easily identified as black dots exclusively localised throughout the nucleolar area, and are called "AgNORs".