RDA Plenary 3 (Dublin) WG proposal from Susanna Sansone (Biosharing), Simon Hodson (CO-DATA) and Rebecca Lawrence (F1000Research) on connecting data standards, policies and repositories in the life sciences.
Presentation by Simon Mayo at the KikForum
Abstract:
As part of the CATE project we are developing keys in Lucid 3 to the genera of Araceae, and to the genus Anthurium (ca. 800spp.), Arum and Philodendron. The key to Arum is already online. These keys will be incorporated into a web-based taxonomic revision of the Araceae family as the plant model group for the project. Anthurium presents a particular challenge as it is a very large and difficult genus, within which it is currently nearly impossible for non-specialists to determine plants to species. We hope the key will go some way to solving this problem.
Update on the BioSharing WG activities at the joint ELIXIR IG and BioSharing WG breakout: https://rd-alliance.org/joint-meeting-ig-elixir-bridging-force-wg-biosharing-registry.html
Pelajar cemerlang assignment computer appFatin Fatihah
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The document provides a market summary and commentary for October 20, 2011. It summarizes that the SET closed down 1.53% at 938.19 points on lower volume, with technical support seen at 923/914 and resistance at 973/990. Most world indices also declined except for the FTSE and DAX. Commodity prices fell while the baht strengthened against the dollar. The report also comments on various Thai companies and economic indicators.
A 2-page leaflet detailing the life science database, standard, and policy registries in BioSharing, and the ability to make a Collection of these resources.
Presentation by Simon Mayo at the KikForum
Abstract:
As part of the CATE project we are developing keys in Lucid 3 to the genera of Araceae, and to the genus Anthurium (ca. 800spp.), Arum and Philodendron. The key to Arum is already online. These keys will be incorporated into a web-based taxonomic revision of the Araceae family as the plant model group for the project. Anthurium presents a particular challenge as it is a very large and difficult genus, within which it is currently nearly impossible for non-specialists to determine plants to species. We hope the key will go some way to solving this problem.
Update on the BioSharing WG activities at the joint ELIXIR IG and BioSharing WG breakout: https://rd-alliance.org/joint-meeting-ig-elixir-bridging-force-wg-biosharing-registry.html
Pelajar cemerlang assignment computer appFatin Fatihah
Dokumen memberikan 7 teknik untuk mempertahankan citra keberhasilan pelajar, termasuk mengingat pencapaian masa lalu, berteman dengan orang berfikiran positif, menjauhi orang negatif, memulai dengan hal-hal kecil, membina hubungan baik dengan guru, mengurangi tekanan perasaan, dan berdoa.
The document provides a market summary and commentary for October 20, 2011. It summarizes that the SET closed down 1.53% at 938.19 points on lower volume, with technical support seen at 923/914 and resistance at 973/990. Most world indices also declined except for the FTSE and DAX. Commodity prices fell while the baht strengthened against the dollar. The report also comments on various Thai companies and economic indicators.
A 2-page leaflet detailing the life science database, standard, and policy registries in BioSharing, and the ability to make a Collection of these resources.
This document discusses the BioSharing registry, which connects standards, databases, and policies in the life sciences. BioSharing provides a searchable portal for standards and databases, helping researchers choose the right options for publishing and funding requirements. It monitors the development of standards and their adoption. The registry links three sections on standards, databases, and policies to help answer common questions about which options to use. Users can search, filter, and refine results or create customized collections. BioSharing aims to support better informed decisions across the life sciences research community.
Cross-linked metadata standards, repositories and the data policies - The Bio...Peter McQuilton
A 20 minute presentation given in Denver (CO) on the 17th September as part of the Biosharing Registry WG, Metadata Standards Catalog WG, and Publishing Data Workflows WG joint session at the Research Data Alliance 8th Plenary (part of International Data Week).
This presentation covers the explosion of metadata standards and databases in the life, biomedical and environmental sciences and how BioSharing is helping to understand this landscape, both in terms of the relationship between standards and other standards and databases, and the life cycle and evolution of each resource. BioSharing also links these resources to the data policies that recommend them (for example, from funding agencies or journal publishers), enabling an understanding of the entire data cycle, from conception to publishing and storage.
Using community-defined metadata standards in the FAIR principles: how BioSha...Peter McQuilton
A 10 minute presentation given in Denver (CO) on the 16th September as part of the IG Elixir Bridging Force and Biosharing Registry WG joint session at the Research Data Alliance 8th Plenary (part of International Data Week).
This presentation covers the use of community-defined metadata standards in the life science, making these standards FAIR, and how BioSharing can help.
RDA Webinar - BioSharing - mapping the landscape of data standards, repositor...Peter McQuilton
A 30 minute webinar presented on behalf of the RDA/Force11 BioSharing WG, covering our work to map data standards, databases, and data policies in the life, biomedical and environmental sciences.
BioSharing Slides - Repository Fringe Edinburgh August 2015Peter McQuilton
The document describes a web-based portal that registers, links, and allows discovery of biological standards and databases. It monitors the development and evolution of standards and their use in databases and adoption in data policies. Its mission is to provide support and guidance to researchers, developers, curators, journal publishers, and funders on choosing the appropriate standards and databases by registering, linking, and making discoverable relevant biological standards and databases.
This document provides an overview of BioSharing.org, a portal that monitors and curates standards, databases, and data policies to help inform and educate users. It summarizes key features including tracking over 225 content standards, 115 databases, and 554 data policies. The portal aims to help users understand how standards are used and make informed decisions on standards selection. It also links standards to training materials and allows custom collections and recommendations to be created.
FAIRsharing and DataCite: Data Repository Selection- Criteria That MatterSusanna-Assunta Sansone
Through a collaboration with Datacite, FAIRsharing is working with a number of journal publishers (PLOS, Springer Nature, F1000, Wiley, Taylor and Francis, Elsevier, EMBO Press, eLife, GigaScience and Cambridge University Press) to identify a common set of criteria for selecting and recommending data repositories (and associated standards) that will be implemented in FAIRsharing. Details of this work and participants at https://osf.io/m2bce
Rafael Jimenez presents the FAIRSharing on behalf of Peter McQuilton, Susanna-Assunta Sansone & the FAIRsharing team | OSFair2017 Workshop
Workshop title: How FAIR friendly is your data catalogue?
Workshop overview:
This workshop will build upon the work planned by the EOSCpilot data interoperability task and the BlueBridge workshop held on April 3 at the RDA meeting. We will investigate common mechanisms for interoperation of data catalogues that preserve established community standards, norms and resources, while simplifying the process of being/becoming FAIR. Can we have a simple interoperability architecture based on a common set of metadata types? What are the minimum metadata requirements to expose FAIR data to EOSC services and EOSC users?
DAY 3 - PARALLEL SESSION 6 & 7
BioSharing - RDA Plenary 6 - Metadata Standards Catalog WG and BioSharing WG ...Peter McQuilton
An introduction to the metadata landscape in the life sciences. Covering metadata standards, the databases that implement them and the policies that endorse/recommend both standards and databases in the life sciences.
"Standards landscape" NIF Big Data 2 Knowledge (BD2K) Initiative, Sep, 2013Susanna-Assunta Sansone
Overview of the landscape of standards in life sciences for the NIH BD2K
"Frameworks for Community-Based Standards Efforts" workshop
September 25, 2013 - September 26, 2013
Co-Chairs: Susanna Sansone, PhD and David Kennedy PhD.
The overall goal of this workshop is to learn what has worked and what has not worked in community-based standards efforts. Participants will have experience in leading specific community based standards initiatives. Prior to the workshop, participants will be asked to address in writing answers to specific questions regarding formulating, conducting, and maintaining such efforts. This information will be used to facilitate focused and actionable discussion at the workshop. Issuance of a Request for Information soliciting comment from the broader community on some of the key issues addressed in the workshop is currently envisioned.
Contact: BD2Kworkshops@mail.nih.gov
Agenda: Frameworks for Community-Based Standards Efforts (PDF 40.7KB)
Participant List: Roster of Invited Participants (PDF 32KB)
Forum (Join the discussion): http://frameworks.prophpbb.com
Watch Live: http://videocast.nih.gov/summary.asp?live=13088 - See more at: http://bd2k.nih.gov/workshops.html#cbse
Overview to: BBSRC Oxford Doctoral Training Partnership - Dr Sansone - July 2014Susanna-Assunta Sansone
What to know when planning for your data management strategy and preparing a data management statement for a research proposal for BBSRC DTP first year students
The BioSharing portal - linking journal and funder data policies to databases...Peter McQuilton
A 20 minute talk on the BioSharing portal, focusing on our work to link journal and funder data policies to the databases and data standards that they recommend/endorse. This was presented as part of a session on data policies in the life sciences with representation from JISC and Springer Nature.
The document summarizes a presentation about making scientific data FAIR (Findable, Accessible, Interoperable, Reusable). It discusses the concept of FAIR data and several of the presenter's related projects. Examples are provided of using standards like ISA-Tab to structure metadata and make datasets interoperable. The presentation outlines the presenter's roles in data capture, publication, and standards development efforts to promote FAIR data principles. Scientific Data, a new journal for peer-reviewed data descriptions, is introduced as a way to make datasets more discoverable and reusable.
NIH iDASH meeting on data sharing - BioSharing, ISA and Scientific DataSusanna-Assunta Sansone
1) The document discusses Susanna-Assunta Sansone's roles and work related to promoting FAIR data standards and practices.
2) It highlights some of her leadership positions with organizations like BioSharing that work to map and promote standards.
3) The document also discusses Scientific Data, a peer-reviewed journal launched by Nature Publishing Group to publish detailed descriptions of scientifically valuable datasets to facilitate reuse.
BioSharing, an ELIXIR Interoperability Platform resourcePeter McQuilton
A 20 minute presentation given at the 9th RDA Plenary in Barcelona as part of the BioSharing WG - ELIXIR Bridging Force IG session. This presentation covers the basics of what BioSharing is, who it's for, and how it captures and connects information on data standards, databases and data policies from the life, biomedical and environmental sciences.
The BioSharing portal - linking databases, data standards and policies in the...Peter McQuilton
A 15 minute presentation for the Interest Group on Agricultural Data (IGAD) RDA pre-meeting meeting. Presented in Barcelona (ES) on Monday 3rd April, 2017.
Susanna-Assunta Sansone is a data consultant and honorary academic editor who works on several projects related to making data FAIR (Findable, Accessible, Interoperable, Reusable). She is the associate director of Scientific Data, a peer-reviewed journal focused on publishing data descriptors to describe and provide access to scientifically valuable datasets. The goal of Scientific Data is to help promote open science and data reuse by publishing structured metadata and narratives about datasets alongside traditional research articles.
The document provides a history of Public Health Services and Systems Research (PHSSR) and the National Coordinating Center. It discusses how early work included developing data standards, funding research through mini-grants, and convening networking opportunities. It also summarizes how the coordinating center aims to advance the field through activities like establishing an endnote library, supporting practice-based research networks, and increasing communication and visibility of PHSSR through various channels. In closing, it reflects on lessons learned about the challenges of cross-sector coordination and promoting underrepresented areas of research like PHSSR.
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RDA WG proposal on connecting data policies, standards & databases in life sciences
1. Susanna-Assunta Sansone
Associate Director, PI
Rebecca Lawrence,
Managing Director
Simon Hodson,
Executive Director
Proposed RDA WG on Connecting data policies, standards
and databases in the life sciences
2. PROPOSED WG: Connecting data policies, standards and
databases in the life sciences
Create a curated and cross-searchable registry of repositories,
standards, and journal & funder policies.
Help stakeholders to make informed decisions:
• Journals on repositories accredited to the level required by their
guidelines, but also meet the necessary standards.
• Researchers on which journals meet their funder requirements
and which repositories meet which journal standards.
• Repositories on the requirements they need to meet to ensure
researchers can use them to meet their funder policies and the
policies of the journals they wish to publish in.
• Funders on which journals and repositories meet their policies.
3. Growing number of reporting standards in life sciences
+ 130
Estimated
+ 150
Source:MIBBI,
EQUATOR
+ 303
Source:BioPortal miame
MIAPA
MIRIAM
MIQAS
MIX
MIGEN
CIMR
MIAPE
MIASE
MIQE
MISFISHIE….
REMARK
CONSORT
MAGE-Tab
GCDML
SRAxml
SOFT
FASTA
DICOM
MzML
SBRML
SEDML…
GELML
ISA-Tab
CML
MITAB
AAO
CHEBI
OBI
PATO ENVO
MOD
BTO
IDO…
TEDDY
PRO
XAO
DO
VO
To track
provenance of
the information
and ensure
richness of data
and experimental
metadata
descriptions, to
maximize
reusability
Databases,
annotation,
curation
tools
8. Focus on life sciences:
• Ensures manageable size of project
• Pilot that is then extendable to other areas of science
The plan:
• Develop assessment criteria for usability and popularity of
standards
• Associate standards to data policies and databases
• Assemble journal and funder policies re data storage
• Make fully cross-searchable
• Thereby help stakeholders make informed decisions
Close interlinking with work of other relevant WGs (e.g. Global Service
of Trusted Repositories WG; Metadata Standards Directory WG) to
utilise outputs on the repository side will be very important