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R	Crash	Course
Kelley		303
Some	Material	is	adapted	from	YaRrr!	The	Pirateā€™s	Guide	to	R
by	Nathaniel	D.	Phillips	 (2018)
https://bookdown.org/ndphillips/YaRrr/
Technology	and	Business	Analyst
1
Olga	Scrivner	@obscrivn
https://www.linkedin.com/in/olgascrivner/
Outline
Part	1	ā€“ Introduction	to	R	and	RStudio
Part	2	ā€“ Working	with	data
Part	3	ā€“ R	Graphics
Part	4	- Deployment,	Sharing,	and	Publishing	with	R
2
Rstudio	Basics
If	you	know	Rstudio	ā€“ skip	this	section
3
Getting	Started
Two	software	packages: Base-R,	and RStudio
4
Getting	Started
RStudio	is	a	graphical	user	interface	interface	for	R.
http://www.rstudio.com/products/rstudio/download/
5
Rstudio	Window
1. SSRC	desktop	ā€“ start	button
2. Rstudio	Shortcut	Icon
6
Rstudio	Screen
7
Open	New	File
R	scripts	are	just	text	files	with	the	ā€œ.Rā€	extension 8
Rstudio	Tour
9
Editor	ā€“ ā€œSource/Scriptā€
10
Consoleā€“ ā€œCommand	Lineā€
11
History	and	Objects
12
Extremely	Useful	Panel
13
Files
The	files	panel	gives	you	access	to	the	file	directory	on	your	hard	drive14
Files	for	Workshop
1. Download	and	unzip	files	from	
https://languagevariationsuite.wordpress.com/
2. Create	a	Folder	for	CrashCourse	in	Desktop
3. Place	unzip	files	in	the	CrashCourse	folder
15
Telling	R	Where	Your	Files	Are
Select	Session	>	Set	Working	Directory	>	Choose	Directory	>	
Select	CrashCourse	folder	in	Desktop	>	Open
16
Packages	- Useful	Libraries
1.	Shows	a	list	of	all	the	R	packages	installed	
2.	Indicates	whether	the	package	is	currently	loaded
17
Packages
Click	to	Activate and	Deactivate a	package
18
Select	Package	Content	- Stats
Click	on	Package	to	Access its	content
Shortcut	to	find	
it	quick
19
Scroll	Stats	Content
Do	you	recognize	any	statistical	functions?	
20
Help!
1. TYPE	IN	CONSOLE:	
?hist
2.		CLICK	ENTER
21
Help!
1. Review	the	Help	Panel
2.	Scroll	down	the	
histogram	function:	
What	are	the	
arguments?
hist(x,...)
x	ā€“ ā€œa	vector	of	values	
for	which	the	histogram	
is	desiredā€
22
Create	Histogram
1. Return	to	your	Editor	file	(it	is	empty)
2. Place	your	curser	on	Line	1
3. Type	any	set	of	numbers
ā€¢ x	=	c(1,2,3,4,5)
4. Keep	your	cursor	on	line	1
5. Click	RUN
6. On	line	2,	type
ā€¢ hist(x)
7. Click	RUN
Name
23
Organizing	Rstudio	Layout
Try	to	adjust	and	change	the	size	of	panels.
24
RUN	versus	ENTER:	Editor	versus	Console
1.	TYPE	IN	CONSOLE
2.	CLICK	ENTER	KEY	- keyboard
5.	RESULTS	- CONSOLE
3.	TYPE	IN	EDITOR
4.	CLICK	RUN
25
Opening	and	Saving	Files
26
Packages
Source:	https://bookdown.org/ndphillips/YaRrr/packages.html
An	R	package	is	a	bunch	of	data,	
functions,	examples	(vignettes)	
stored	in	one	package.
CRAN	is	a	main	source	of	R	packages.
https://cran.r-project.org/
27
Installing	Packages	Practice	- Wordcloud
28
Exploring	Data
29
Load	CSV	into	R
NOTE:	Remember	about	Working	Directory?	Go	to	Slide	16,	if	needed
30
pirates	=	read.csv(ā€œpirates.csvā€)
By	default	for	csv:
read.csv(file,	header	=	TRUE,	sep =	ā€œ,ā€)
You	can	use	single	quotes	or	double	quotes	for	file	names
Data	Storage	in	R
31
View	Entire	Dataset
Click	on	pirates
32
Take	a	Closer	Look	at	Your	Data
head()	- take	a	look	at	the	first	few	rows
Type	head(pirates) in	your	script.	Click	run.
33
Descriptive	Statistics:	Min,	Max,	Mean,	Table
mean(pirates$age)
max(pirates$height)
table(pirates$sex)
pirates$age
Table	name	$	Column	name
34
Categorical	variable
Continuous	variable
Summary	of		Stats	Functions
practice	
each	
function:
Type	in	
your	
editor	
examples	
and	RUN
35
Aggregate	Function
36
Names	of	columns
Name	of	dataset
Type	of	Statistics
Change	mean	to	sum:	aggregate(formula	=	age	~	sex,	data	=	pirates,	FUN	=	sum)
Plotting
37
You	can	select	and	highlight	two	lines,	then	click	RUN.	Or	RUN	each	line	at	a	time
If	plot	does	not	fit	your	window,	adjust	the	Rstudio	layout	and	RUN	plot	again
Error	in	plot.new()	:	figure	margins	too	large
Saving	Plot
38
Adding	Title,	Labels,	and	Color
39
Adding		Regression	Line
40
Box	Plot
41
boxplot
How	to	Interpret	Box	Plot
42
Source:	https://www.wellbeingatschool.org.nz/information-sheet/understanding-and-interpreting-box-plots
Median - the	mid-point	of	the	data
Inter-quartile	range - the	middle	50%
How	to	Interpret	Box	Plot
43
Source:	https://www.wellbeingatschool.org.nz/information-sheet/understanding-and-interpreting-box-plots
The	box	plot	is	tall	ā€“ a	lot	of	variation
The	box	plot	is	short	ā€“ a	very	small	variation	deviation
One	box	plot	is	much	higher	or	lower	than	another	ā€“
a	difference	between	groups
The	4	sections	of	the	box	plot	are	uneven	in	size	ā€“
more	or	less	variation	in	different	quartiles
Same	median,	different	distribution
Hypothesis	testing
44
T-test	ā€“ two	sample
45
Difference	between	two	variables
TWO	SIDED	- you	are	testing	for	the	
possibility	of	the	relationship	in	
both	directions
ONE	SIDED	- you	are	testing	for	the	
possibility	of	the	relationship	in	one	
direction	(x	>	y	OR	x	<	y)
Source:	https://stats.idre.ucla.edu/other/mult-pkg/faq/general/faq-what-are-the-differences-between-one-tailed-and-two-tailed-tests/
T-test	ā€“ two	sample
46
Difference	between	two	variables
p-value	of	0.7	- we	fail	to	reject	our	
NULL	hypothesis	that	there	is	NO	
difference	in	the	men	age	of	pirates	
who	wear	headbands	and	those	that	
do	not
Correlation	Testing
47
Correlation	between	two	variables
p-value	<	0.0000000000000002	-
we	reject	our	NULL	hypothesis	and	
there	is	a	significant	(positive)	
relationship	between	a	pirateā€™s	
height	and	weight
Linear	Regression	Model
48
Can	we	use	pirateā€™s	age,	weight,	and	number	of	tattoos	
to	predict	how	many	treasure	chests	they	found?
DV	ā€“ dependent	variable
IV	ā€“ independent	variable
Time	Series
49
Import	EU	Stocks	Data	1991-1998
50
eu	<- read.csv("eustockmarkets.csv")
head(eu)
Create	Time	Series	EU	Stocks	1991-1998
51
time_series	<- ts(eu,	start=1991,	end=1998,	frequency	=	260)
start(time_series)
end(time_series)
Plot	Time	Series	EU	Stocks	1991-1998
52
plot(time_series)
Time	Series	Plot	EU	Stocks	1991-1998
53
ts.plot(time_series,	col	=	1:4,	xlab =	"Year",	ylab =	"Index	Value",	main	
=	"	Major	European	Stock	Indices,	1991-1998 ")
Color	ā€“ based	on	columns
Add	Legend	- Time	Series	Plot	EU	Stocks	1991-1998
54
ts.plot(time_series,	col	=	1:4,	xlab =	"Year",	ylab =	"Index	Value",	main	
=	"	Major	European	Stock	Indices,	1991-1998 ")
legend("topleft",	legend	=	colnames(time_series),		col	=	1:4,	lty =	1)
Debugging
55
Debugging	R
Source:	https://bookdown.org/ndphillips/YaRrr/debugging.html
The + symbol	means	that	R	is	
Waiting	for	you	to	(properly)	finish	
Code	(example	ā€“ you	forgot	a	closing	
parenthesis)
The > symbol	means	that	R	is	Ready	
for	new	code.	
56
Debugging	R
Source:	https://bookdown.org/ndphillips/YaRrr/debugging.html
Console:
57
Debugging	R
Source:	https://bookdown.org/ndphillips/YaRrr/debugging.html 58
Debugging	R
Source:	https://bookdown.org/ndphillips/YaRrr/debugging.html
Console:
59
Debugging	R
Source:	https://bookdown.org/ndphillips/YaRrr/debugging.html
Console:
60
Syntax
61
R	Syntax
62
Strings
63
Strings:	Practice
64
Vector
65
Length
length()	ā€“ a	function
66

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