The results of University of Glasgow masters student (and former crees intern) laura Braunholtz's research on nocturnal bird communities in a regenerating tropical forest. This research was conducted at the Manu Learning Centre in 2013.
Among the large mammals of Africa, elephants are probably the worst affected by human activities. Although they have been listed as endangered and protected since 1989, illegal poaching and habitat destruction continue to diminish and isolate remaining populations that are dispersed widely over 37 sub-Saharan African countries. Their populations currently exist in small isolated habitat, and this threatens elephant genetic diversity. Although literature is available on the taxonomy and phylogeny of African elephant, few studies have focused on codon usage on mitochondrial genomes. To analyze nucleotide diversity, selective pressure and demographic history of African elephants, we used the portion of mitochondrial sequences of 102 individuals available in the genome database. Our data indicated a low codon bias index (CBI) and a relatively high effective number of codons (ENC) value in the mitochondrial genome, suggesting that African elephants are less biased in their codon usage preference. The data also support a strong purifying selection in the mitochondrial genome of African elephants. However, few sites are under positive selection in the mitochondrial genome of African elephants, with Loxodonta africana presenting more sites under positive selection compared to L. cyclotis. The present work supports the idea that different evolutionary rate among nucleotide sites in L. africana and L. cyclotis, attributable to differences in the frequency of positive selection and probably different environmental conditions, are the driving forces for the codon usage bias in African elephants. Further studies are needed to investigate the contribution of different subpopulation in the genetic structure and diversity of African elephants.
Linking animal population dynamics to alterations in foraging behaviourJacob Nabe-Nielsen
Noise from ships and wind farms can cause marine mammals to change behaviour. They may forage less efficiently if disturbed, or they may avoid dispersing through some areas. Although behavioural changes are sometimes observed for individual animals, little is known about how populations are affected. The aim of this study is to investigate how the dynamics and survival of the harbour porpoise population in the Inner Danish Waters (IDW) is affected by the combined effects of noise and by-catch using an individual-based population model.
Among the large mammals of Africa, elephants are probably the worst affected by human activities. Although they have been listed as endangered and protected since 1989, illegal poaching and habitat destruction continue to diminish and isolate remaining populations that are dispersed widely over 37 sub-Saharan African countries. Their populations currently exist in small isolated habitat, and this threatens elephant genetic diversity. Although literature is available on the taxonomy and phylogeny of African elephant, few studies have focused on codon usage on mitochondrial genomes. To analyze nucleotide diversity, selective pressure and demographic history of African elephants, we used the portion of mitochondrial sequences of 102 individuals available in the genome database. Our data indicated a low codon bias index (CBI) and a relatively high effective number of codons (ENC) value in the mitochondrial genome, suggesting that African elephants are less biased in their codon usage preference. The data also support a strong purifying selection in the mitochondrial genome of African elephants. However, few sites are under positive selection in the mitochondrial genome of African elephants, with Loxodonta africana presenting more sites under positive selection compared to L. cyclotis. The present work supports the idea that different evolutionary rate among nucleotide sites in L. africana and L. cyclotis, attributable to differences in the frequency of positive selection and probably different environmental conditions, are the driving forces for the codon usage bias in African elephants. Further studies are needed to investigate the contribution of different subpopulation in the genetic structure and diversity of African elephants.
Linking animal population dynamics to alterations in foraging behaviourJacob Nabe-Nielsen
Noise from ships and wind farms can cause marine mammals to change behaviour. They may forage less efficiently if disturbed, or they may avoid dispersing through some areas. Although behavioural changes are sometimes observed for individual animals, little is known about how populations are affected. The aim of this study is to investigate how the dynamics and survival of the harbour porpoise population in the Inner Danish Waters (IDW) is affected by the combined effects of noise and by-catch using an individual-based population model.
The results so far of crees Scientific Coordinator Andy Whitworth's PhD research on assessing the potential biodiversity and conservation value of regenerating rainforest.
No Ordinary Matter: Conserving, Restoring & Enhancing Africa's Soils: DG AGRI...Agriculture for Impact
Professor Sir Gordon Conway gives a presentation to the European Commission on the findings of our latest report on soil quality for food security in Africa.
THE EFFECTS OF CLEARCUT SIZE ON THE BIRD COMMUNITY IN THE SECOND COLLEGE GRANTjoshmooney
Abstract. This study examines the effects of forest opening (clearcut) size on the surrounding forest-bird community with the objective of offering management suggestions for foresters who employ the clearcut method. I hypothesized that large and small clearcuts would have different effects on the forest-bird assemblage associated with each. I used the point-count method to assess bird abundance in clearcuts, on the edges, and 100 m into the forest from the edges of large and small clearcuts. I found that Neotropical migrant birds and forest-interior birds were the most affected by large clearcuts showing significantly lower abundance in forest areas 100 m from large clearcut edges than in forest areas 100 m from small clearcuts. Edge-open birds were more abundant in large clearcut openings and edges than in small clearcut openings and edges. Blue jays (an avian nest predator) were more abundant on the edges of large clearcuts than on the edges of small clearcuts. A recent study found that forest-interior bird abundance levels off after 100 m distance from small (0.4 ha) forest openings. This result combined with my findings suggest that small openings in the Second College Grant represent less of a disturbance to Neotropical migrants and forest-interior birds. Additionally, given higher abundances of an avian nest predator in large clearcuts, reproductive success could be much lower in areas associated with large clearcuts. Some species such as the White-throated Sparrow (Zonotrichia albicollis), however preferred large clearcuts suggesting that there are some benefits to overall bird abundance by including large clearcuts in a managed landscape.
This slideshow was created for the VCE Environmental Science Online Course, Unit 3: Biodiversity. It explains different methods of assessing biodiversity and discusses several indices for measurement.
The results so far of crees Scientific Coordinator Andy Whitworth's PhD research on assessing the potential biodiversity and conservation value of regenerating rainforest.
No Ordinary Matter: Conserving, Restoring & Enhancing Africa's Soils: DG AGRI...Agriculture for Impact
Professor Sir Gordon Conway gives a presentation to the European Commission on the findings of our latest report on soil quality for food security in Africa.
THE EFFECTS OF CLEARCUT SIZE ON THE BIRD COMMUNITY IN THE SECOND COLLEGE GRANTjoshmooney
Abstract. This study examines the effects of forest opening (clearcut) size on the surrounding forest-bird community with the objective of offering management suggestions for foresters who employ the clearcut method. I hypothesized that large and small clearcuts would have different effects on the forest-bird assemblage associated with each. I used the point-count method to assess bird abundance in clearcuts, on the edges, and 100 m into the forest from the edges of large and small clearcuts. I found that Neotropical migrant birds and forest-interior birds were the most affected by large clearcuts showing significantly lower abundance in forest areas 100 m from large clearcut edges than in forest areas 100 m from small clearcuts. Edge-open birds were more abundant in large clearcut openings and edges than in small clearcut openings and edges. Blue jays (an avian nest predator) were more abundant on the edges of large clearcuts than on the edges of small clearcuts. A recent study found that forest-interior bird abundance levels off after 100 m distance from small (0.4 ha) forest openings. This result combined with my findings suggest that small openings in the Second College Grant represent less of a disturbance to Neotropical migrants and forest-interior birds. Additionally, given higher abundances of an avian nest predator in large clearcuts, reproductive success could be much lower in areas associated with large clearcuts. Some species such as the White-throated Sparrow (Zonotrichia albicollis), however preferred large clearcuts suggesting that there are some benefits to overall bird abundance by including large clearcuts in a managed landscape.
This slideshow was created for the VCE Environmental Science Online Course, Unit 3: Biodiversity. It explains different methods of assessing biodiversity and discusses several indices for measurement.
Modeling the occurrence and abundance of fishing cat in ctl, india (1)Shwetha Nair
A poster for the Young Ecologists Talk and Interact Conference 2016 explaining my research and results on status of fishing cats in the central terai landscape of India
Shrubs and invasive grass predict lizard occurrence in an arid shrublandAlessandro Filazzola
Filazzola, A., Westphal, M., Powers, M., Liczner, A.R., Johnson, B, & Lortie, C.J.The realized niche of the endangered blunt-nosed leopard lizard (Gambelia sila) is determined by interactions between native shrubs and invasive annual grass. ESA 100th Meeting Baltimore.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Nocturnal bird communities in a regenerating tropical forest in SE Peru
1. Nocturnal bird communities in a
regenerating tropical forest, SE Peru
Laura Braunholtz
Zoology Work Placement MSci
University of Glasgow
Photo: Marcus Brent-Smith
2.
3.
4. Photo: Marcus Brent-Smith
Aim:
Investigate how different levels of human disturbance has
affected the nocturnal bird community of the MLC reserve.
Hypotheses:
H1: That time of survey would affect the number of
nocturnal bird individuals detected.
H2: That the forest with a history of higher human
disturbance would have a lower diversity and abundance of
nocturnal birds.
5.
6. H1: That time of survey would
affect the number of individuals
detected.
Fig. 1: Comparison of average bird abundance for AM and PM transects. Each
data point (N=11) is the average bird abundance (birds per km trail surveyed) for
each trail (p=0.23).
7. H2: That the forest type with a history
of higher human disturbance (CCR)
would have a lower diversity and
abundance of nocturnal birds.
Fig. 1: Average number of birds encountered per km.
Fig. 2: Sample-based rarefaction curves for number of species estimated
to be encountered with the number of individuals sampled for the three
forest types.