Chair, Suresh S. Ramalingam, MD, FACP, FASCO, Arjun Balar, MD, Yelena Janjigian, MD, and Kurt A. Schalper, MD, PhD, prepared useful Practice Aids pertaining to PD-L1 expression as a cancer immunotherapy biomarker for this CME/MOC/CC activity titled “Revisiting PD-L1 as an Immunotherapy Biomarker Across the Cancer Spectrum: Current and Emerging Standards of Testing, Scoring, and Assay Interpretation.” For the full presentation, downloadable Practice Aids, and complete CME/MOC/CC information, and to apply for credit, please visit us at http://bit.ly/3t8iyRk. CME/MOC/CC credit will be available until May 10, 2022.
This document discusses microRNAs (miRNAs) and methods for studying their function and regulation of genes. It describes:
1) What miRNAs are, how they work by incorporating into the RISC complex and repressing target mRNAs through translational repression or degradation.
2) Techniques for manipulating miRNAs in cell lines using reporter assays, mimics, inhibitors and target protectors to study their effects on genes.
3) How to screen for miRNAs that regulate a target gene using ready-made cDNA panels and quantitative PCR. Several examples are provided of identifying miRNAs that regulate important cancer genes.
Circulating Biomarkers for Alzheimer's Disease: Neurodegenerative Disorders ...QIAGEN
Alzheimer's disease (AD) is a complex neurodegenerative disorder. Circulating miRNAs hold great promise in the discovery of non-invasive and novel biomarkers for AD diagnosis and prognosis. This slideshow presents the role of miRNAs in AD and details current progress in biomarker discovery. Various tools for pathway-focused and genome-wide miRNA expression profiling, miRNA functional studies and target identification are also included.
Prediction of Genetic Disorders based onTrinucleotide RepeatsSOURIKDEY1
This document discusses trinucleotide repeat disorders and describes a project to predict these genetic disorders based on trinucleotide repeats. It provides background on trinucleotide repeat expansions and how they can cause genetic disorders. It then describes two specific disorders - Huntington's disease caused by CAG repeats on chromosome 4 and Fragile X syndrome caused by CGG repeats on the X chromosome. The document outlines the classification of repeats for these two disorders based on repeat count and associated disease risk. It also provides an overview of how the prediction project was coded to output the predicted classification for different repeat counts.
Plasma Proteomics: The Next Frontier of Biomarker Discovery in the Precision ...InsideScientific
Prof. Manuel Mayr and Dr. Marco Tognetti discussed how plasma proteomics is increasingly recognized as a fundamental approach to accelerate biomarker discovery and drug development, taking precision medicine to the next level.
This document summarizes a study that identified genes in the extracellular matrix that regulate the susceptibility of cultured cells to prion infection. The study compared gene expression in prion-susceptible and resistant cell lines. They identified 9 genes, including fibronectin 1 and integrin α8, that were upregulated in resistant cells. Knockdown of these genes increased susceptibility by altering the extracellular matrix structure and deposition of prion proteins. The results suggest the extracellular matrix plays a key role in controlling prion infection by influencing how prion proteins interact and convert forms.
microRNA discovery and biomarker development in clinical samplesexiqon
The webinar discussed microRNA discovery and biomarker development in clinical samples using LNATM technology. It covered how LNATM probes can overcome challenges in analyzing microRNAs due to their short length and sequence variations. The webinar also presented a case study using LNATM PCR to detect microRNAs in blood plasma as potential biomarkers for early detection of colorectal cancer. Finally, it discussed challenges in normalizing microRNA qPCR data from serum/plasma samples.
Chair, Suresh S. Ramalingam, MD, FACP, FASCO, Arjun Balar, MD, Yelena Janjigian, MD, and Kurt A. Schalper, MD, PhD, prepared useful Practice Aids pertaining to PD-L1 expression as a cancer immunotherapy biomarker for this CME/MOC/CC activity titled “Revisiting PD-L1 as an Immunotherapy Biomarker Across the Cancer Spectrum: Current and Emerging Standards of Testing, Scoring, and Assay Interpretation.” For the full presentation, downloadable Practice Aids, and complete CME/MOC/CC information, and to apply for credit, please visit us at http://bit.ly/3t8iyRk. CME/MOC/CC credit will be available until May 10, 2022.
This document discusses microRNAs (miRNAs) and methods for studying their function and regulation of genes. It describes:
1) What miRNAs are, how they work by incorporating into the RISC complex and repressing target mRNAs through translational repression or degradation.
2) Techniques for manipulating miRNAs in cell lines using reporter assays, mimics, inhibitors and target protectors to study their effects on genes.
3) How to screen for miRNAs that regulate a target gene using ready-made cDNA panels and quantitative PCR. Several examples are provided of identifying miRNAs that regulate important cancer genes.
Circulating Biomarkers for Alzheimer's Disease: Neurodegenerative Disorders ...QIAGEN
Alzheimer's disease (AD) is a complex neurodegenerative disorder. Circulating miRNAs hold great promise in the discovery of non-invasive and novel biomarkers for AD diagnosis and prognosis. This slideshow presents the role of miRNAs in AD and details current progress in biomarker discovery. Various tools for pathway-focused and genome-wide miRNA expression profiling, miRNA functional studies and target identification are also included.
Prediction of Genetic Disorders based onTrinucleotide RepeatsSOURIKDEY1
This document discusses trinucleotide repeat disorders and describes a project to predict these genetic disorders based on trinucleotide repeats. It provides background on trinucleotide repeat expansions and how they can cause genetic disorders. It then describes two specific disorders - Huntington's disease caused by CAG repeats on chromosome 4 and Fragile X syndrome caused by CGG repeats on the X chromosome. The document outlines the classification of repeats for these two disorders based on repeat count and associated disease risk. It also provides an overview of how the prediction project was coded to output the predicted classification for different repeat counts.
Plasma Proteomics: The Next Frontier of Biomarker Discovery in the Precision ...InsideScientific
Prof. Manuel Mayr and Dr. Marco Tognetti discussed how plasma proteomics is increasingly recognized as a fundamental approach to accelerate biomarker discovery and drug development, taking precision medicine to the next level.
This document summarizes a study that identified genes in the extracellular matrix that regulate the susceptibility of cultured cells to prion infection. The study compared gene expression in prion-susceptible and resistant cell lines. They identified 9 genes, including fibronectin 1 and integrin α8, that were upregulated in resistant cells. Knockdown of these genes increased susceptibility by altering the extracellular matrix structure and deposition of prion proteins. The results suggest the extracellular matrix plays a key role in controlling prion infection by influencing how prion proteins interact and convert forms.
microRNA discovery and biomarker development in clinical samplesexiqon
The webinar discussed microRNA discovery and biomarker development in clinical samples using LNATM technology. It covered how LNATM probes can overcome challenges in analyzing microRNAs due to their short length and sequence variations. The webinar also presented a case study using LNATM PCR to detect microRNAs in blood plasma as potential biomarkers for early detection of colorectal cancer. Finally, it discussed challenges in normalizing microRNA qPCR data from serum/plasma samples.
miRNA profiling from blood challenges and recommendations - Download the articleQIAGEN
The discovery of stable miRNA species circulating in blood has led to increased research focus on disease-related variations in serum and plasma miRNA expression and the possibility that such variations could serve as noninvasive biomarkers for disease. Working with serum and plasma miRNA presents various challenges in purification and characterization. In this paper, we outline QIAGEN recommendations for robust purification and quantification, as well as reliable data normalization and analysis.
Pe gylated drug delivery systems for si rna drug development in cancer therapyDoriaFang
1) PEGylated drug delivery systems show potential for siRNA drug delivery, especially in cancer therapy.
2) siRNA works by degrading mRNA after transcription, preventing gene expression, and has advantages over chemotherapy like high safety and efficacy.
3) However, barriers remain for clinical use of siRNA in cancer including instability, difficulty entering cells, off-target effects, and potential immune activation. Developing delivery systems to transport siRNA into target cells is a major challenge.
Polymerase chain reaction (PCR) is an important technique used in numerous basic studies involving DNA molecules. It works by amplifying specific DNA sequences using primers and DNA polymerase. Glypican-3 (GPC3) is highly expressed in hepatocellular carcinoma cells and tissues and may play an important role in cancer progression by interacting with matrix metalloproteinases and growth factors. Real-time PCR can detect eye pathogens like bacteria and fungi within two hours, much faster than traditional culture methods which take 48 hours, though PCR risks false positives. PCR has many medical uses including disease diagnosis, genetic screening, detection of infectious organisms, and characterization for transplants.
RNA Drugs Informatics - 90 min lecture with questionsMorten Lindow
The document discusses RNA-directed drugs from a bioinformatics perspective. It begins by outlining the goals of explaining the rationale for RNA-directed drugs, differences from traditional small molecules, roles of bioinformatics in sequence analysis and target detection. It then describes locked nucleic acids (LNA) and how they improve oligonucleotide drug properties. Different classes of RNA-directed drugs like siRNA, gapmers and mixmers are also discussed. The document touches on using expression data to increase statistical power by analyzing gene groups. It provides examples of metabolic targets like ApoB and PCSK9 being targeted with gapmers, and miR-122 being targeted to reduce HCV and cholesterol levels. Combining expression data with target prediction and pathway
Small interfering RNAs (siRNAs) can silence gene expression through RNA interference and show promise for breast cancer therapy. siRNAs are non-coding RNAs that can regulate genes post-transcriptionally. For breast cancer treatment, potential siRNA targets include genes involved in estrogen receptor expression and signaling like HER2, NFAT3, and other cofactors. Effective delivery of siRNAs to breast cancer cells remains a challenge but is being explored through various modes of administration. siRNA therapy holds potential as a new method of gene therapy for cancers like breast cancer in the future.
The NK1 receptor antagonist NKP608 inhibits proliferation of colorectal cance...nathaliapineda5
This document discusses colorectal cancer and potential treatments. It first provides background on cancer in general and risk factors for colorectal cancer. It then discusses the potential treatment NKP608, which acts on the neurokinin-1 receptor and has shown anxiolytic and antidepressant effects. The document outlines the objective of inhibiting the WNT signaling pathway for antitumor drugs. It describes methods used like cell culture, proliferation assays, detection of apoptosis, and western blot. Results show NKP608 reduced proliferation and induced apoptosis. The discussion analyzes results in relation to known effects of substances and pathways involved. The conclusion is that NKP608 improves malignant conditions by stimulating pro-apoptotic molecules and decreasing anti-ap
PCR (polymerase chain reaction) is an important technique used in numerous basic studies involving DNA molecules. It works by amplifying specific DNA sequences based on DNA strand complementarity. The document discusses how PCR can be used to detect glypican-3 (GPC3) expression in hepatocellular carcinoma (HCC) cells and tissues faster than traditional culture methods. Real-time PCR assays can detect eye pathogens like bacteria and fungi within two hours, much faster than standard culture methods that take 48 hours. PCR provides accurate, rapid diagnosis that allows for more targeted treatment compared to traditional diagnostic techniques.
SiRNA Delivery for Cancer Therapy: Challenges and Future Perspective by Suvadeep Sen in Advancements in Bioequivalence & Bioavailability
https://crimsonpublishers.com/abb/fulltext/ABB.000518.php
This document discusses signal transduction pathways and provides an overview of products from QIAGEN for their analysis. It describes several key signaling pathways including TGFβ, WNT, Notch, p53, and JAK/STAT. It outlines methods for studying these pathways including gene expression analysis using RT-PCR and epigenetic techniques like miRNA, DNA methylation, and histone ChIP analysis. Reporter assays and RNAi tools for functional studies are also discussed. Examples are provided showing how these techniques have been applied to study topics like prostate cancer, viral infection, and breast cancer.
Receptor targeted polyplexes for pdna and sirna delivery emadiElaheh Emadi- Andani
This document discusses receptor-targeted polyplexes for delivering plasmid DNA (pDNA) and small interfering RNA (siRNA). It describes the challenges of nucleic acid delivery, including degradation and immune responses. Nonviral vectors like polyplexes are formed through electrostatic interactions between nucleic acids and polymers. Cellular delivery involves binding ligands for targeting, endocytosis, endosomal escape, and intracellular trafficking. Strategies to improve delivery include PEGylation, proton sponge polymers, lysosomotropic agents, and fusogenic peptides. The document compares delivery methods and considers optimization of polyplex properties, targeting, and intracellular release.
MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression and affect multiple cellular processes. Dysregulation of miRNAs is common in cancer and can impact cancer hallmarks like sustained proliferation, evading growth suppression, resisting cell death, and activating invasion and metastasis. Certain miRNAs are considered oncogenes when their expression is increased in tumors, while others act as tumor suppressors when their expression is decreased. Altered miRNA expression and biogenesis machinery defects contribute to cancer development and progression. miRNAs also show potential as cancer biomarkers and therapeutic targets.
A nanomedical device should perform multiple functions, so a multifunctional nanoparticle system can be constructed from the inner core outward. The core can contain a drug, while outer layers provide targeting ligands, such as antibodies, peptides, or aptamers directed against receptors overexpressed on diseased cells. Aptamers have advantages over antibodies like uniform activity between batches. Peptides can also serve as targeting ligands if they recognize receptors. Other ligands like folate or transferrin can bind their cognate receptors, but compete with circulating levels; antibodies are more specific but expensive. A variety of conjugation strategies can be used to attach targeting ligands to nanoparticles.
1) The document describes research characterizing the promoter region of miRNA-155, which is associated with expression in indolent Small Lymphocytic Lymphomas.
2) The researchers performed PCR to amplify the promoter region, inserted it into a luciferase reporter vector, and transfected this construct into HEK293T cells to examine promoter activity.
3) Analysis of potential transcription factor binding sites using deletion constructs will help identify factors regulating miRNA-155 expression.
1. The document discusses nucleic acid-based therapeutic drug delivery systems, specifically aptamers and antisense oligonucleotides. It provides details on the structure and selection of aptamers, including DNA and RNA aptamers as well as peptide aptamers.
2. Applications of aptamers discussed include using them as affinity reagents, bioimaging probes, biosensors, and therapeutics. Limitations and challenges of aptamers like degradation and excretion are also outlined along with potential solutions.
3. In conclusion, the current status of aptamers in diagnostics and therapy is examined, noting they can sometimes replace antibodies for diagnosing diseases when specific binding to a target is required.
Glycogen synthase kinase 3ß participates in late stages of Dengue virus-2 inf...ElisaAlvarez27
This document discusses the role of the GSK3β protein in dengue virus infection. It investigates GSK3β activation at different stages of infection in Huh7 and vero cells. The objective is to understand the influence of GSK3β on cellular responses and viral release. Various methods are described, including MTT cytotoxicity assay, flow cytometry, western blotting, and fluorescence microscopy to evaluate the effects of inhibiting GSK3β in dengue virus-2 infected Huh7 cells. Results show inhibition of GSK3β reduced viral replication and apoptosis. The conclusion is that understanding GSK3β's role in late stages of dengue infection could help manage disease.
This document summarizes a study that prepared and characterized nanolipoparticles (NLPs) containing MDR1 siRNA for delivery to cancer cells. NLPs were produced using the detergent dialysis method with PEGylated lipids. The resulting NLPs were 80-90 nm in size with a neutral surface charge and over 80% siRNA encapsulation efficiency. In vitro studies showed the NLPs had low cytotoxicity and improved cellular uptake of siRNA compared to a commercial transfection agent. The document concludes that NLPs containing MDR1 siRNA may be a good candidate for further in vivo siRNA delivery studies aimed at reversing multidrug resistance in cancer therapy.
This document discusses next generation molecular profiling technologies. It begins with an overview of first generation molecular profiling techniques like gene sequencing, microarrays, and fluorescence in situ hybridization (FISH). It then describes some key advantages of next generation sequencing technologies like their ability to generate more sequence data at lower cost. Examples of second generation DNA and RNA profiling methods are provided, including exome sequencing and RNA-sequencing. The document also briefly discusses emerging areas like third generation sequencing and next generation protein profiling using mass spectrometry. Epigenetic profiling using techniques like methyl-binding domain sequencing is summarized in the section on next generation epigenetic profiling.
Functional Analysis of miRNA: miRNA and its Role in Human Disease Webinar Ser...QIAGEN
This slideshow highlights the use of miRNA mimics, inhibitors and target protectors to increase, decrease and adjust the cellular concentration of miRNA and disrupt specific miRNA–mRNA interactions. A ready-to-use screening tool for identifying miRNA targets and info on how to predict mRNA targets using miRNA expression data are also highlighted.
The NFkB pathway was identified as important for high CCL2 expression in the glioma cell line U105MG. Using a transcription factor siRNA array to knock down 42 transcription factors, RELA (a subunit of NFkB) was found to significantly lower CCL2 expression levels. Knocking down RELA also enhanced the effect of BCNU (carmustine) treatment, indicating that targeting the NFkB pathway may help sensitize tumor cells to chemotherapy in glioma.
Polymerase chain reaction (PCR) is an important technique used in numerous basic studies involving DNA molecules. It works by amplifying specific DNA sequences using primers and DNA polymerase. Glypican-3 (GPC3) is highly expressed in hepatocellular carcinoma cells and tissues and may play an important role in cancer progression by interacting with matrix metalloproteinases and growth factors. Real-time PCR can detect eye pathogens like bacteria and fungi within two hours, much faster than traditional culture methods which take 48 hours, though PCR risks false positives. PCR has many medical uses including disease diagnosis, genetic screening, detection of infectious organisms, and characterization for transplants.
Cisplatin (DDP) is a widely used chemotherapy drug for advanced cervical
cancer (CC), but resistance poses a significant challenge. While miR-4739 has been
implicated in tumor development, its specific role in regulating DDP resistance in CC
remains unclear.
Cisplatin (DDP) is a widely used chemotherapy drug for advanced cervical
cancer (CC), but resistance poses a significant challenge. While miR-4739 has been
implicated in tumor development, its specific role in regulating DDP resistance in CC
remains unclear.
miRNA profiling from blood challenges and recommendations - Download the articleQIAGEN
The discovery of stable miRNA species circulating in blood has led to increased research focus on disease-related variations in serum and plasma miRNA expression and the possibility that such variations could serve as noninvasive biomarkers for disease. Working with serum and plasma miRNA presents various challenges in purification and characterization. In this paper, we outline QIAGEN recommendations for robust purification and quantification, as well as reliable data normalization and analysis.
Pe gylated drug delivery systems for si rna drug development in cancer therapyDoriaFang
1) PEGylated drug delivery systems show potential for siRNA drug delivery, especially in cancer therapy.
2) siRNA works by degrading mRNA after transcription, preventing gene expression, and has advantages over chemotherapy like high safety and efficacy.
3) However, barriers remain for clinical use of siRNA in cancer including instability, difficulty entering cells, off-target effects, and potential immune activation. Developing delivery systems to transport siRNA into target cells is a major challenge.
Polymerase chain reaction (PCR) is an important technique used in numerous basic studies involving DNA molecules. It works by amplifying specific DNA sequences using primers and DNA polymerase. Glypican-3 (GPC3) is highly expressed in hepatocellular carcinoma cells and tissues and may play an important role in cancer progression by interacting with matrix metalloproteinases and growth factors. Real-time PCR can detect eye pathogens like bacteria and fungi within two hours, much faster than traditional culture methods which take 48 hours, though PCR risks false positives. PCR has many medical uses including disease diagnosis, genetic screening, detection of infectious organisms, and characterization for transplants.
RNA Drugs Informatics - 90 min lecture with questionsMorten Lindow
The document discusses RNA-directed drugs from a bioinformatics perspective. It begins by outlining the goals of explaining the rationale for RNA-directed drugs, differences from traditional small molecules, roles of bioinformatics in sequence analysis and target detection. It then describes locked nucleic acids (LNA) and how they improve oligonucleotide drug properties. Different classes of RNA-directed drugs like siRNA, gapmers and mixmers are also discussed. The document touches on using expression data to increase statistical power by analyzing gene groups. It provides examples of metabolic targets like ApoB and PCSK9 being targeted with gapmers, and miR-122 being targeted to reduce HCV and cholesterol levels. Combining expression data with target prediction and pathway
Small interfering RNAs (siRNAs) can silence gene expression through RNA interference and show promise for breast cancer therapy. siRNAs are non-coding RNAs that can regulate genes post-transcriptionally. For breast cancer treatment, potential siRNA targets include genes involved in estrogen receptor expression and signaling like HER2, NFAT3, and other cofactors. Effective delivery of siRNAs to breast cancer cells remains a challenge but is being explored through various modes of administration. siRNA therapy holds potential as a new method of gene therapy for cancers like breast cancer in the future.
The NK1 receptor antagonist NKP608 inhibits proliferation of colorectal cance...nathaliapineda5
This document discusses colorectal cancer and potential treatments. It first provides background on cancer in general and risk factors for colorectal cancer. It then discusses the potential treatment NKP608, which acts on the neurokinin-1 receptor and has shown anxiolytic and antidepressant effects. The document outlines the objective of inhibiting the WNT signaling pathway for antitumor drugs. It describes methods used like cell culture, proliferation assays, detection of apoptosis, and western blot. Results show NKP608 reduced proliferation and induced apoptosis. The discussion analyzes results in relation to known effects of substances and pathways involved. The conclusion is that NKP608 improves malignant conditions by stimulating pro-apoptotic molecules and decreasing anti-ap
PCR (polymerase chain reaction) is an important technique used in numerous basic studies involving DNA molecules. It works by amplifying specific DNA sequences based on DNA strand complementarity. The document discusses how PCR can be used to detect glypican-3 (GPC3) expression in hepatocellular carcinoma (HCC) cells and tissues faster than traditional culture methods. Real-time PCR assays can detect eye pathogens like bacteria and fungi within two hours, much faster than standard culture methods that take 48 hours. PCR provides accurate, rapid diagnosis that allows for more targeted treatment compared to traditional diagnostic techniques.
SiRNA Delivery for Cancer Therapy: Challenges and Future Perspective by Suvadeep Sen in Advancements in Bioequivalence & Bioavailability
https://crimsonpublishers.com/abb/fulltext/ABB.000518.php
This document discusses signal transduction pathways and provides an overview of products from QIAGEN for their analysis. It describes several key signaling pathways including TGFβ, WNT, Notch, p53, and JAK/STAT. It outlines methods for studying these pathways including gene expression analysis using RT-PCR and epigenetic techniques like miRNA, DNA methylation, and histone ChIP analysis. Reporter assays and RNAi tools for functional studies are also discussed. Examples are provided showing how these techniques have been applied to study topics like prostate cancer, viral infection, and breast cancer.
Receptor targeted polyplexes for pdna and sirna delivery emadiElaheh Emadi- Andani
This document discusses receptor-targeted polyplexes for delivering plasmid DNA (pDNA) and small interfering RNA (siRNA). It describes the challenges of nucleic acid delivery, including degradation and immune responses. Nonviral vectors like polyplexes are formed through electrostatic interactions between nucleic acids and polymers. Cellular delivery involves binding ligands for targeting, endocytosis, endosomal escape, and intracellular trafficking. Strategies to improve delivery include PEGylation, proton sponge polymers, lysosomotropic agents, and fusogenic peptides. The document compares delivery methods and considers optimization of polyplex properties, targeting, and intracellular release.
MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression and affect multiple cellular processes. Dysregulation of miRNAs is common in cancer and can impact cancer hallmarks like sustained proliferation, evading growth suppression, resisting cell death, and activating invasion and metastasis. Certain miRNAs are considered oncogenes when their expression is increased in tumors, while others act as tumor suppressors when their expression is decreased. Altered miRNA expression and biogenesis machinery defects contribute to cancer development and progression. miRNAs also show potential as cancer biomarkers and therapeutic targets.
A nanomedical device should perform multiple functions, so a multifunctional nanoparticle system can be constructed from the inner core outward. The core can contain a drug, while outer layers provide targeting ligands, such as antibodies, peptides, or aptamers directed against receptors overexpressed on diseased cells. Aptamers have advantages over antibodies like uniform activity between batches. Peptides can also serve as targeting ligands if they recognize receptors. Other ligands like folate or transferrin can bind their cognate receptors, but compete with circulating levels; antibodies are more specific but expensive. A variety of conjugation strategies can be used to attach targeting ligands to nanoparticles.
1) The document describes research characterizing the promoter region of miRNA-155, which is associated with expression in indolent Small Lymphocytic Lymphomas.
2) The researchers performed PCR to amplify the promoter region, inserted it into a luciferase reporter vector, and transfected this construct into HEK293T cells to examine promoter activity.
3) Analysis of potential transcription factor binding sites using deletion constructs will help identify factors regulating miRNA-155 expression.
1. The document discusses nucleic acid-based therapeutic drug delivery systems, specifically aptamers and antisense oligonucleotides. It provides details on the structure and selection of aptamers, including DNA and RNA aptamers as well as peptide aptamers.
2. Applications of aptamers discussed include using them as affinity reagents, bioimaging probes, biosensors, and therapeutics. Limitations and challenges of aptamers like degradation and excretion are also outlined along with potential solutions.
3. In conclusion, the current status of aptamers in diagnostics and therapy is examined, noting they can sometimes replace antibodies for diagnosing diseases when specific binding to a target is required.
Glycogen synthase kinase 3ß participates in late stages of Dengue virus-2 inf...ElisaAlvarez27
This document discusses the role of the GSK3β protein in dengue virus infection. It investigates GSK3β activation at different stages of infection in Huh7 and vero cells. The objective is to understand the influence of GSK3β on cellular responses and viral release. Various methods are described, including MTT cytotoxicity assay, flow cytometry, western blotting, and fluorescence microscopy to evaluate the effects of inhibiting GSK3β in dengue virus-2 infected Huh7 cells. Results show inhibition of GSK3β reduced viral replication and apoptosis. The conclusion is that understanding GSK3β's role in late stages of dengue infection could help manage disease.
This document summarizes a study that prepared and characterized nanolipoparticles (NLPs) containing MDR1 siRNA for delivery to cancer cells. NLPs were produced using the detergent dialysis method with PEGylated lipids. The resulting NLPs were 80-90 nm in size with a neutral surface charge and over 80% siRNA encapsulation efficiency. In vitro studies showed the NLPs had low cytotoxicity and improved cellular uptake of siRNA compared to a commercial transfection agent. The document concludes that NLPs containing MDR1 siRNA may be a good candidate for further in vivo siRNA delivery studies aimed at reversing multidrug resistance in cancer therapy.
This document discusses next generation molecular profiling technologies. It begins with an overview of first generation molecular profiling techniques like gene sequencing, microarrays, and fluorescence in situ hybridization (FISH). It then describes some key advantages of next generation sequencing technologies like their ability to generate more sequence data at lower cost. Examples of second generation DNA and RNA profiling methods are provided, including exome sequencing and RNA-sequencing. The document also briefly discusses emerging areas like third generation sequencing and next generation protein profiling using mass spectrometry. Epigenetic profiling using techniques like methyl-binding domain sequencing is summarized in the section on next generation epigenetic profiling.
Functional Analysis of miRNA: miRNA and its Role in Human Disease Webinar Ser...QIAGEN
This slideshow highlights the use of miRNA mimics, inhibitors and target protectors to increase, decrease and adjust the cellular concentration of miRNA and disrupt specific miRNA–mRNA interactions. A ready-to-use screening tool for identifying miRNA targets and info on how to predict mRNA targets using miRNA expression data are also highlighted.
The NFkB pathway was identified as important for high CCL2 expression in the glioma cell line U105MG. Using a transcription factor siRNA array to knock down 42 transcription factors, RELA (a subunit of NFkB) was found to significantly lower CCL2 expression levels. Knocking down RELA also enhanced the effect of BCNU (carmustine) treatment, indicating that targeting the NFkB pathway may help sensitize tumor cells to chemotherapy in glioma.
Polymerase chain reaction (PCR) is an important technique used in numerous basic studies involving DNA molecules. It works by amplifying specific DNA sequences using primers and DNA polymerase. Glypican-3 (GPC3) is highly expressed in hepatocellular carcinoma cells and tissues and may play an important role in cancer progression by interacting with matrix metalloproteinases and growth factors. Real-time PCR can detect eye pathogens like bacteria and fungi within two hours, much faster than traditional culture methods which take 48 hours, though PCR risks false positives. PCR has many medical uses including disease diagnosis, genetic screening, detection of infectious organisms, and characterization for transplants.
Cisplatin (DDP) is a widely used chemotherapy drug for advanced cervical
cancer (CC), but resistance poses a significant challenge. While miR-4739 has been
implicated in tumor development, its specific role in regulating DDP resistance in CC
remains unclear.
Cisplatin (DDP) is a widely used chemotherapy drug for advanced cervical
cancer (CC), but resistance poses a significant challenge. While miR-4739 has been
implicated in tumor development, its specific role in regulating DDP resistance in CC
remains unclear.
Seminario Biologia Molecular Michael DiazMaikol17051
This study investigated fibroblast activation protein (FAP) as a potential biomarker for interstitial lung disease (ILD). Methods like western blot analysis, real-time PCR, immunofluorescence staining, and immunohistochemical staining were used to compare FAP expression in lung tissue samples from ILD patients and controls. Results showed higher FAP protein and mRNA levels in ILD lungs compared to controls. This suggests FAP could be a more precise biomarker for early ILD diagnosis and monitoring treatment response, as opposed to biomarkers previously used. Molecular biology research methods helped verify the data and find this new biomarker.
This document summarizes a study exploring the effects of baicalein (BAI) on bladder cancer cells. The study found that BAI inhibits proliferation and promotes apoptosis in bladder cancer cells. It also inhibits bladder cancer cell migration by down-regulating microRNA (miR)-106 expression. Specifically, BAI affects bladder cancer cells by inhibiting the JNK and MEK/ERK pathways through reducing miR-106 levels. P21 was also identified as a target of miR-106. The study utilized techniques like transfection, PCR, western blot analysis, and cell migration assays to analyze these regulatory mechanisms and effects of BAI on bladder cancer cells.
1) The study found that circ-LDLRAD3, STAT3 expression were upregulated while miR-876-3p expression was downregulated in pancreatic cancer tissues and cell lines compared to normal tissues/cells.
2) Knockdown of circ-LDLRAD3 suppressed pancreatic cancer cell proliferation, migration, and invasion.
3) Mechanistically, circ-LDLRAD3 was found to directly regulate miR-876-3p expression, and miR-876-3p targets STAT3. Downregulation of circ-LDLRAD3 inhibited cell proliferation, invasion and migration by regulating the miR-876-3p/STAT3 axis.
PTPRC as a Predictive Marker Related to PD-L1 for Prognosis and Immunotherapy...semualkaira
The expression of programmed cell death protein 1 (PD-L1) has been found to be closely related to the efficacy
of immunotherapy. The aim of our study is to explore biomarkers
associated with PD-L1 expression that might influence the efficacy
of immunotherapy.
PTPRC as a Predictive Marker Related to PD-L1 for Prognosis and Immunotherapy...semualkaira
The expression of programmed cell death protein 1 (PD-L1) has been found to be closely related to the efficacy of immunotherapy. The aim of our study is to explore biomarkers associated with PD-L1 expression that might influence the efficacy of immunotherapy.
PTPRC as a Predictive Marker Related to PD-L1 for Prognosis and Immunotherapy...semualkaira
The expression of programmed cell death protein 1 (PD-L1) has been found to be closely related to the efficacy of immunotherapy. The aim of our study is to explore biomarkers associated with PD-L1 expression that might influence the efficacy of immunotherapy.
The expression of ITPK in normal colon and colorectal cancer cells - Postermaldjuan
This document summarizes a student's summer research project investigating expression levels of inositol trisphosphate kinase (ITPK) isoforms in normal colon cells and colorectal cancer cells. Preliminary studies found ITPKC overexpression inhibits cancer cell binding to liver cells, suggesting it is anti-metastatic. The student aimed to measure ITPK mRNA and protein levels to test if ITPKC is downregulated in cancer versus normal cells. Initial results showed ITPKA protein levels varied between cancer cell lines, and an additional higher molecular weight protein was lower in cancer cells. RNA extraction was initially unsuccessful but a second attempt yielded intact RNA for further analysis.
Procalcitonin is a peptide marker that is useful for differentiating between bacterial and viral infections. It begins to rise more quickly than C-reactive protein after an inflammatory insult and its levels correlate with the severity of infection or sepsis. Clinical situations where measuring procalcitonin may be helpful include determining the need for and length of antibiotic therapy for respiratory infections, diagnosing and monitoring sepsis, and distinguishing between bacterial and viral causes of meningitis or pneumonia. While elevated in response to bacterial infection, procalcitonin levels may also increase in response to certain non-infectious conditions like trauma or transplantation. It is a more reliable indicator of sepsis than C-reactive protein or other markers.
Deadenylase Expression in Small Cell Lung Cancer Related To Clinical Characte...JohnJulie1
Lung cancer is the second common malignancy and the most aggressive cancer worldwide with late diagnosis and poor prognosis. The search for biomarkers that promote early diagnosis and improve therapeutic strategies focuses to the understanding of the mechanisms underlying cancer development and progression. The deregulation of gene expression is one of the cancer hallmarks reflected to the stability...
Deadenylase Expression in Small Cell Lung Cancer Related To Clinical Characte...AnonIshanvi
Lung cancer is the second common malignancy and the most aggressive cancer worldwide with late diagnosis and poor prognosis. The search for biomarkers that promote early diagnosis and improve therapeutic strategies focuses to the understanding of the mechanisms underlying cancer development and progression
Deadenylase Expression in Small Cell Lung Cancer Related To Clinical Characte...daranisaha
Lung cancer is the second common malignancy and the most aggressive cancer worldwide with late diagnosis and poor prognosis. The search for biomarkers that promote early diagnosis and improve therapeutic strategies focuses to the understanding of the mechanisms underlying cancer development and progression. The deregulation of gene expression is one of the cancer hallmarks reflected to the stability...
Deadenylase Expression in Small Cell Lung Cancer Related To Clinical Characte...EditorSara
Lung cancer is the second common malignancy and the most aggressive cancer worldwide with late diagnosis and poor prognosis. The search for biomarkers that promote early diagnosis and improve therapeutic strategies focuses to the understanding of the mechanisms underlying cancer development and progression. The deregulation of gene expression is one of the cancer hallmarks reflected to the stability..
Deadenylase Expression in Small Cell Lung Cancer Related To Clinical Characte...semualkaira
Lung cancer is the second common malignancy and the most aggressive cancer worldwide with late diagnosis and poor prognosis. The search for biomarkers that promote early diagnosis and improve therapeutic strategies focuses to the understanding of the mechanisms underlying cancer development and progression. The deregulation of gene expression is one of the cancer hallmarks reflected to the stability..
Deadenylase Expression in Small Cell Lung Cancer Related To Clinical Characte...semualkaira
Lung cancer is the second common malignancy and the most aggressive cancer worldwide with late diagnosis and poor prognosis. The search for biomarkers that promote early diagnosis and improve therapeutic strategies focuses to the understanding of the mechanisms underlying cancer development and progression. The deregulation of gene expression is one of the cancer hallmarks reflected to the stability...
Deadenylase Expression in Small Cell Lung Cancer Related To Clinical Characte...NainaAnon
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HDAC3 modulates cancer immunity via increasing PD-L1 expression in pancreatic cancer
1. Antonia Londoño Pérez
ID: 000364149
3rd semester
Medicine
Universidad Pontificia Bolivariana
Medellin
2019
2. INTRODUCT
ION
•Pancreatic ductal adenocarcionoma (PDAC) in the
second leading cause of cancer-related deaths
worldwide, due to it’s resistance to conventional
treatments prognosis is very poor, with a les than
a 5-year survial rate.
•PD-L1 (programmed death ligand 1) is expressed
in tumor cells and its expression and the
mechanism of resistance in PDAC to antiPD-L1 is
associated with poor diagnosis. It has been shown
that the expresión of PD-L1 is key in
inmmunotherapy efficacy.
3. INTRODUCT
ION
•RGFP966, the specific inhibitor of HDAC3 (histone
deacetylase 3) decreases the protein’s expression and
rRNA level of PD-L1in pancreatic cancer cells.
•The study intends to show that HDAC3 is critical for
PD-L1 regulation and positively correlated with PD-L1
in PDAC patients.
4. GENERAL
OBJECTIVE
Explore the regulatory mechanism
of PD-L1 and search for the small
molecular inhibitions that suppress
the expression of PD-L1 in
pancreatic cancer cells.
5. MATERIALS
AND
METHODS
WESTERN BLOT
Western blot is a laboratory technique used to
detect a specific protein in a blood or tissue
sample.
The method involves the use of gel
electrophoresis to separate the proteins from the
sample. The separated proteins are transferred
from the gel to the surface of a membrane. The
membrane is exposed to a specific antibody
against the protein under study. The binding of
the antibody is detected using a radioactive or
chemical label.
A Western Blot is sometimes used to diagnose
diseases. It makes possible to estimate the size of
a protein, confirm the presence of post-
translational modifications such as
phosphorylation, and be used to quantitatively
compare protein levels between samples
https://www.genome.gov/glossarys/index.cfm?id=207
http://www.ecogen.com/upfiles/A56009.pdf
6. MATERIALS
AND
METHODS
REAL-TIME RT-PCR
Enables reliable detection and
measurement of products generated
during each cycle of PCR process. This
technique became possible after
introduction of an oligonucleotide probe
which was designed to hybridize within
the target sequence.
Cleavage of the probe during PCR because
of the 5' nuclease activity of Taq
polymerase can be used to detect
amplification of the target-specific
product.
https://www.ncbi.nlm.nih.gov/probe/docs/techqpcr/
7. MATERIALS
AND
METHODS
IMMUNOHISTOCHEMISTRY
Immunohistochemistry is a powerful
microscopy-based technique for
visualizing cellular components, for
instance proteins or other macromolecules
in tissue samples.
The strength of IHC is the intuitive visual
output that reveals the existence and
localization of the target-protein in the
context of different cell types, biological
states, and/or subcellular localization
within complex tissues.
It’s used as an important tool in health
care and pathology for diagnostic purposes
or to stratify patients for optimized
treatment regimes, is also widely used in
research where molecules of interest are
analyzed to study their roles in both
healthy and diseased cells.
https://www.proteinatlas.org/learn/method/immunohistoc
hemistry
8. MATERIALS
AND
METHODS
RNA INTERFERENCE
Double-stranded RNA-mediated interference
(RNAi) is a simple and rapid method of
silencing gene expression in a range of
organisms. The silencing of a gene is a
consequence of degradation of RNA into
short RNAs that activate ribonucleases to
target homologous mRNA. The resulting
phenotypes either are identical to those of
genetic null mutants or resemble an allelic
series of mutants.
RNAi is used in functional genomics and
developing therapies for the treatment of
viral infection, dominant disorders,
neurological disorders, and many types of
cancers (in vivo inactivation of gene products
linked to human disease progression and
pathology).
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC309050/
https://www.ncbi.nlm.nih.gov/probe/docs/techrnai/
9. RESULTS
Cells treated with DMSO
and without RGFP966
(inhibitor) showed higher
expression of PD-L1.
Between the two cell lines,
the BxPC-3 showed more
resistance to the inhibitor
than MIA PaCa-2 wich
showed less expression to
gradual increase of
RGFP966 through a period
of 48 hours.
10. RESULTS
The silencing of HDAC3
with short hairpin led to
decrease in the
expression of PD-L1
mRNA, the decrease was
more evident in BxPC-3
The overexpression of
HDAC3 increases the
appereance of the PD-L1
in both cell lines.
12. RESULTS
The silencing of STAT3
reduces the expression of
HDAC3 and therefore, of
PD-L1.
Ectopic HDCA3 increases
expression of PD-L1, this
is evident when there’s
silencing of STAT3
13. DISCUSSION
AUTHOR STATEMENT CONFIRMATION
Winograd R, Byrne KT,
Evans RA, Odorizzi PM,
Meyer AR, Bajor DL
A growing body of evidence
suggests that the expression
level of PD-L1 in pancreatic
cancer is critical for the
efficacy of anti-PD-L1
therapy.
It was confirmed
Booth L, Roberts JL,
Poklepovic A, Kirkwood J,
Dent P
HDAC1 and HDAC2 silencing
in other studies hasn’t
decreased the PD-L1 level.
No. Only states that
silencing HDAC3
decreases the protein
level
Eddekaoui M, Chheda C,
Soufi B, Zayou F, Hu RW,
Ramanujan VK
HDAC inhibition inproves the
immune response and
outcome of pancreatic cancer
in mice.
Confirmed.
14. CONCLUSIO
NS
•As PD-L1 works supressing the immune system,
favors proliferation and cell survival, it’s
expression in cancer cells increases the resistance
of this type of cancer, the higher the expression of
this protein, the more places the anti-PD-L1can
work in, so that the cellular death can take place.
•Managing to silence STAT3 and therefore reducing
levels of expression of HDAC3 and PD-L1in cells
may lead to the development of new
immunotherapy treatments.