CombineArchiveWeb -- web based tool to handle files associated with modelling results. -- DEMO at SWAT4LS 2014 in Berlin
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CombineArchiveWeb -- web based tool to handle files associated with modelling results. -- DEMO at SWAT4LS 2014 in Berlin
- 1. SYSTEMS BIOLOGY BIOINFORMATICS ROSTOCK S E S simulation experiment management system CombineArchiveWeb web based tool to handle files associated with modelling results. MARTIN SCHARM, FLORIAN WENDLAND, MARTIN PETERS, MARKUS WOLFIEN, TOM THEILE, DAGMAR WALTEMATH Department of Systems Biology & Bioinformatics, University of Rostock http://sems.uni-rostock.de SWAT4LS, Berlin 2014 December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 1
- 2. How do you share your data? science sucks - sterni4ever science sucks - sterni4ever science sucks - sterni4ever December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 2
- 3. The COMBINE Archive one file to share them all TM December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 3
- 4. The COMBINE Archive one file to share them all • OMEX: Open Modelling EXchange Format • Contents: • manifest.xml – information about files and their formats • Meta data files – clerical information • The files – necessary to reproduce a modelling result December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 4
- 5. CAT The CombineArchive Toolkit Martin Scharm Florian Wendland Martin Peters Dagmar Waltemath Tom Theile Markus Wolfien Website: sems.uni-rostock.de/cat December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 5
- 6. CAT The CombineArchive Toolkit DEMO. http://cat.sems.uni-rostock.de December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 6
- 7. CAT The CombineArchive Toolkit create CombineArchive Toolkit CombineArchive Library Desktop Web Application Interface science sucks - sterni4ever BioModels Database modify explore CellML Model Repository share science sucks - sterni4ever science sucks - sterni4ever science sucks - sterni4ever science sucks - sterni4ever Martin Scharm Florian Wendland Martin Peters Dagmar Waltemath Tom Theile Markus Wolfien peerj.com/preprints/514 December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 7
- 8. SYSTEMS BIOLOGY BIOINFORMATICS ROSTOCK S E S simulation experiment management system Thank you for your attention! SEMS group Dagmar Waltemath Martin Peters Markus Wolfien Vivek Garg Srijana Kayastha Olaf Wolkenhauer @SemsProject http://sems.uni-rostock.de December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 8