Volocity 3D image analysis software enables comprehensive analysis and quantification of biological samples in true 3D. It provides interactive visualization of multichannel 3D image stacks, allows precise measurement and analysis of cellular structures and organelles in 3D, and features restoration tools to improve image quality. The software is designed for ease of use, high performance, and compatibility with various microscopy systems. It offers flexible licensing and is supported by technical expertise to accelerate research.
The document describes Definiens Tissue Studio 2.0, an image analysis software solution. Some key updates in version 2.0 include full support for immunofluorescence images, improved nucleus detection, and customized tuning of the Definiens Composer technology for region of interest detection. The software provides a simple 4-step workflow (load, configure, run, review). It allows detection of cells and subcellular structures in brightfield and immunofluorescence images. Region of interest detection uses Definiens Composer technology which interactively "learns" from user input.
The document compares film-based and digital radiography, noting that digital provides equivalent images with less radiation exposure and allows for instant viewing, manipulation and storage of images digitally. It also reviews the process and considerations for using intraoral dental sensors with a digital system, including sensor placement, exposure settings, and mounting images within the dental software. Overall, the text outlines the technology and procedures involved in digital radiography compared to traditional film-based methods.
Definiens Tissue Studio Advanced Digital Pathology Image Analysis SolutionDaniel Nicolson
Definiens Tissue Studio is an advanced digital pathology image analysis solution that enables simple and accurate detection of regions of interest (ROIs) via Definiens Composer Technology. It provides quantitative analysis on a cell-by-cell basis across heterogeneous tissue samples from whole slides and tissue microarrays from any source. The Definiens Composer Technology trains the system to identify ROIs using only 4 representative images. It then detects nuclei and exports multi-parametric quantitative features from selected ROIs to provide deeper insights and faster results for better decision making.
World Hepatitis Day is observed annually on July 28th to raise awareness of viral hepatitis. Hepatitis B and C are responsible for most of the 1.4 million annual deaths from viral hepatitis worldwide. A new global strategy aims to eliminate hepatitis B and C as public health threats by 2030.
A report in this issue of the MMWR found an increasing risk of perinatal transmission of hepatitis C virus in the US, particularly in areas where hepatitis C incidence is rising among young adults and women of childbearing age. In the absence of a hepatitis C vaccine, improved risk screening, testing, and case reporting are needed to help curb vertical transmission from mother to child.
National data showed a 22% increase in
Este documento describe los procesos de capacitación de una empresa llamada Productiva Capacitaciones. La empresa ofrece capacitaciones alineadas, pertinentes y efectivas en diversas áreas como inocuidad, calidad, medio ambiente, bienestar animal, salud y seguridad. Cuenta con un equipo de instructores capacitados y ofrece cursos y talleres a la medida de los clientes con un enfoque en el aprendizaje. Algunos ejemplos de capacitaciones recientes son sobre procesos lácteos, la norma ISO 9001:2015 y práctic
Este documento presenta información sobre cómo fortalecer la autoestima en los niños y niñas. Explica que la autoestima depende del amor y aceptación que reciben de su familia, y que es importante reconocer los esfuerzos de los niños, motivar sus opiniones, y evitar castigos físicos. También describe las características de una alta autoestima y baja autoestima, y formas de demostrar a los niños cuánto los queremos para mejorar su autoconcepto.
Este documento resume la importancia jurídica de la inamovilidad laboral en Venezuela. Explica que la inamovilidad está protegida por el Artículo 94 de la Ley Orgánica del Trabajo y prohíbe el despido, traslado o desmejora de trabajadores sin justa causa. Detalla los tipos de inamovilidad como el fuero maternal, paternal, sindical y por delegado de prevención. Además, explica los procedimientos aplicados cuando se infringe la inamovilidad, como solicitar la calificación de un
The document describes Definiens Tissue Studio 2.0, an image analysis software solution. Some key updates in version 2.0 include full support for immunofluorescence images, improved nucleus detection, and customized tuning of the Definiens Composer technology for region of interest detection. The software provides a simple 4-step workflow (load, configure, run, review). It allows detection of cells and subcellular structures in brightfield and immunofluorescence images. Region of interest detection uses Definiens Composer technology which interactively "learns" from user input.
The document compares film-based and digital radiography, noting that digital provides equivalent images with less radiation exposure and allows for instant viewing, manipulation and storage of images digitally. It also reviews the process and considerations for using intraoral dental sensors with a digital system, including sensor placement, exposure settings, and mounting images within the dental software. Overall, the text outlines the technology and procedures involved in digital radiography compared to traditional film-based methods.
Definiens Tissue Studio Advanced Digital Pathology Image Analysis SolutionDaniel Nicolson
Definiens Tissue Studio is an advanced digital pathology image analysis solution that enables simple and accurate detection of regions of interest (ROIs) via Definiens Composer Technology. It provides quantitative analysis on a cell-by-cell basis across heterogeneous tissue samples from whole slides and tissue microarrays from any source. The Definiens Composer Technology trains the system to identify ROIs using only 4 representative images. It then detects nuclei and exports multi-parametric quantitative features from selected ROIs to provide deeper insights and faster results for better decision making.
World Hepatitis Day is observed annually on July 28th to raise awareness of viral hepatitis. Hepatitis B and C are responsible for most of the 1.4 million annual deaths from viral hepatitis worldwide. A new global strategy aims to eliminate hepatitis B and C as public health threats by 2030.
A report in this issue of the MMWR found an increasing risk of perinatal transmission of hepatitis C virus in the US, particularly in areas where hepatitis C incidence is rising among young adults and women of childbearing age. In the absence of a hepatitis C vaccine, improved risk screening, testing, and case reporting are needed to help curb vertical transmission from mother to child.
National data showed a 22% increase in
Este documento describe los procesos de capacitación de una empresa llamada Productiva Capacitaciones. La empresa ofrece capacitaciones alineadas, pertinentes y efectivas en diversas áreas como inocuidad, calidad, medio ambiente, bienestar animal, salud y seguridad. Cuenta con un equipo de instructores capacitados y ofrece cursos y talleres a la medida de los clientes con un enfoque en el aprendizaje. Algunos ejemplos de capacitaciones recientes son sobre procesos lácteos, la norma ISO 9001:2015 y práctic
Este documento presenta información sobre cómo fortalecer la autoestima en los niños y niñas. Explica que la autoestima depende del amor y aceptación que reciben de su familia, y que es importante reconocer los esfuerzos de los niños, motivar sus opiniones, y evitar castigos físicos. También describe las características de una alta autoestima y baja autoestima, y formas de demostrar a los niños cuánto los queremos para mejorar su autoconcepto.
Este documento resume la importancia jurídica de la inamovilidad laboral en Venezuela. Explica que la inamovilidad está protegida por el Artículo 94 de la Ley Orgánica del Trabajo y prohíbe el despido, traslado o desmejora de trabajadores sin justa causa. Detalla los tipos de inamovilidad como el fuero maternal, paternal, sindical y por delegado de prevención. Además, explica los procedimientos aplicados cuando se infringe la inamovilidad, como solicitar la calificación de un
Mudasir Jalal is seeking a career opportunity where innovation, quality, and hard work are valued. He has over 10 years of experience in administrative roles in India and Saudi Arabia, including positions as Senior Administrator, Lead Secretary, and Administrative Clerk. His skills include leadership, management, organization, problem solving, and proficiency in Microsoft Office programs. He holds degrees from the University of Kashmir and technical institutes.
1. O documento discute o arminianismo, uma visão teológica que enfatiza a responsabilidade humana e o caráter justo e amoroso de Deus no processo da salvação.
2. O arminianismo surgiu a partir das ideias do teólogo holandês Jacobus Arminius no século 16 em oposição ao calvinismo rígido de sua época.
3. Os principais pontos do arminianismo são a depravação total do homem, a eleição condicional, a expiação universal, a graça resistível
Este documento proporciona información sobre el inicio del año escolar 2015 en una institución educativa en la región de Tacna, Perú. Presenta datos sobre la matrícula de estudiantes y personal docente y administrativo. Además, evalúa aspectos relacionados con la matrícula oportuna, el mantenimiento de la infraestructura escolar, la acogida de estudiantes y padres, la contratación de docentes, el programa de alimentación escolar, los materiales educativos y la organización y planificación de la institución para el año escol
Directiva desarrollo e inicio -UGEL-TayacajaGerson Ames
Este documento establece orientaciones complementarias para el desarrollo y buen inicio del año escolar 2016 en las instituciones educativas de educación básica y técnico productivo de la jurisdicción de la Unidad de Gestión Educativa Local de Tayacaja. Se describen las líneas de acción nacional y regional, así como las líneas de acción específicas a nivel de la UGEL de Tayacaja, que incluyen el proceso de matrícula escolar, la aplicación de kits de evaluación, el inicio de labores escolares, y proces
Ethel Jane M. Delmonte has 13 years of experience in the BPO industry, currently working as an HR Learning and Communications Partner at kgb Philippines, Inc. She designs and facilitates learning programs, monitors training initiatives, and manages communication materials. Previously she held roles as Team Manager, Training Development Officer, and Customer Service Representative at kgb Philippines, Inc. She holds a Bachelor's degree in Mass Communication and a Master's degree in Educational Administration.
10 tips for effective communication skillsjobguide247
This document provides tips for improving communication skills. It discusses the importance of tone, tuning, and body language in communication. Some key points for effective communication include confidence, preparation, understanding your audience, using visual aids, maintaining eye contact and a natural speaking style for presentations, and removing distractions when listening or reading. Non-verbal communication such as gestures, posture, and facial expressions are also emphasized. Effective writing involves outlining and adopting a confident tone.
This document provides tips and sample answers for 10 common interview questions. It discusses popular questions like "Why do you want this job?", "What is your biggest weakness?", and "What do you know about our company?". For each question, it offers advice on what makes a strong answer and provides examples of how to effectively respond. The goal is to help job applicants prepare compelling answers that will make a positive impression on interviewers.
This document provides information on FICO credit scores from the three major US credit bureaus - Equifax, Experian, and TransUnion - including the score version, years available, score ranges, and prior brand names for each version dating back to the late 1990s. It shows that FICO scores have evolved over time, with the latest version being FICO Score 9, and that different credit bureaus may have had different brand names for the same FICO score version. Specialized FICO industry scores are also available for auto, bankcard/credit card, mortgage and other loan types.
arivis Vision4D - IMAGE ANALYSIS WHICH FITS YOUR DATA (4 pages, 2020)Johannes Amon
arivis Vision4D is the leading software for exploring and analysing large multi-dimensional image datasets created by confocal, Light Sheet, Multi-Photon or Electron Microscopy. arivis Vision4D can handle several hundred Gigabytes or terabytes of such image data as easily as if they were just a few megabytes in size.
OptraSCAN Fluorescence Scanning & Analysis is a Small Footprint, Automated Whole Slide Fluorescence & Brightfield Scanning With High-Resolution Imaging.
Visit-https://optrascan.com/scan/os-fl-multiplexing-fluorescence-scanner/
Contact us at-info@optrascan.com
(May 17, 2021) Introducing the Newton 7.0 Optical Imaging System: The Modalit...Scintica Instrumentation
In this webinar, Katie reviewed how optical imaging works and provided some common examples of how it’s used within preclinical research. She introduced the Newton 7.0 FT500, an optical imaging system manufactured by Vilber that included bioluminescence, fluorescence, and 3D tomography capabilities. She concluded the webinar by going through some of the most common questions/considerations that come up for those looking to add optical imaging capabilities to their lab.
The Newton 7.0 is a highly sensitive optical imaging system dedicated to preclinical imaging of small animals in vivo, and may also be used on a variety of in vitro and ex vivo samples. It combines the best optics and animal handling features for high-quality image data and quantification. The Newton 7.0 system is capable of bioluminescence, fluorescence as well as 3D tomographic imaging.
The system is:
User-friendly
Does not require any radiation to acquire images
Is non-invasive, allowing for longitudinal studies
Allows for up to 5 mice or 3 rats to be imaged simultaneously
The Newton 7.0 is highly sensitive and can be used in a wide variety of research applications. Various bioluminescent reporters like firefly luciferase and many fluorescent molecular reagents can be used to visualize and track tumors, monitor disease or inflammation development, target molecules to nanoparticles or follow biodistribution and pharmacokinetics noninvasively.
Whether you are just exploring the idea of adding optical capabilities to your lab or you’ve been imaging for years, you won’t want to miss the opportunity to learn about this cool new technology and ask questions about your specific research applications and study design.
Learning objectives:
How does optical imaging work?
Common applications of preclinical optical imaging
A product overview: Newton 7.0 FT500
What makes the system unique?
How to add optical imaging capabilities to your lab?
In collaboration with The Keenan Research Center for Biomedical Science, Toronto
Production Bioinformatics, emphasis on ProductionChris Dwan
Production bioinformatics at Sema4 can be thought of as data ops - a peer to the lab ops organization. We operate 24/7 to deliver correct and timely results on NGS and other data for thousands of samples per week. This deck introduces the Prod BI organization and systems architecture with a focus on what it takes to run bioinformatics in production rather than for R&D or pure research.
The document summarizes the development and validation of a hyperspectral imaging microscopy system called Xanoscope for pathology applications. Key points:
1) Xanoscope allows for fast, automated acquisition of hyperspectral images over contiguous wavelength bands with high spatial resolution, reducing scan times significantly compared to previous methods.
2) Validation experiments showed Xanoscope produces quantitative measurements and improves signal-to-noise ratio through optimized camera settings and image accumulation.
3) Xanoscope was used to scan 10 multiplexed fluorophores in cell lines, and linear unmixing was able to measure the individual contribution of each fluorophore at pixel-level for advanced pathological analysis.
The Genome Voyager platform enables institutions to analyze and interpret sequencing data from targeted gene panels, exomes and whole genomes to streamline the interpretation and reporting process. It provides easy-to-use filtering and visualization capabilities, facilitates collaboration between users, and utilizes a knowledge base to consolidate information and rapidly expand understanding of variants and conditions. Interested institutions can join the beta program to evaluate this solution and provide feedback.
Digital pathology incorporates the acquisition, sharing and interpretation of pathology information digitally. It involves scanning glass slides to create high-resolution digital images that can be viewed on a computer. This replaces the traditional microscope with a slide scanner and reading station. Key components include the slide scanner, whole slide imaging software, and digital servers for image storage and analysis. Digital pathology allows for remote consultation, education, research and improved efficiency. Challenges include high costs initially and full adoption may require standards. The future of pathology is moving towards more automation and integration of artificial intelligence for analysis.
dkNET Webinar: The Human BioMolecular Atlas Program (HuBMAP) 10/14/2022dkNET
Abstract
HuBMAP aims to catalyze the development of an open, global framework for comprehensively mapping the human body at cellular resolution. HuBMAP goals include: (1) Accelerate the development of the next generation of tools and techniques for constructing high resolution spatial tissue maps. (2) Generate foundational 3D tissue atlases. (3) Establish an open data platform. (4) Coordinate and collaborate with other funding agencies, programs, and the biomedical research community. (5) Support projects that demonstrate the value of the resources developed by the program. The HuBMAP Portal can be found at https://portal.hubmapconsortium.org and the Visible Human MOOC describes the compilation and coverage of HuBMAP data, demonstrates new single-cell analysis and mapping techniques, and introduces major features of the HuBMAP portal.
The top 3 key questions that HuBMAP can answer:
1. What assay types are best to map the human body in 3D and across scales?
2. What Common Coordinate System (CCF) is best to construct the Human Reference Atlas?
3. How can others help construct and/or use the Human Reference Atlas?
Presenters:
Katy Börner, PhD, Victor H. Yngve Distinguished Professor of Engineering and Information Science, Department of Intelligent Systems Engineering and Information Science, Indiana University
Jeffrey Spraggins, PhD, Assistant Professor, Department of Cell and Developmental Biology, Vanderbilt University
Upcoming webinars schedule: https://dknet.org/about/webinar
This document describes a high resolution multi-modal imaging platform that combines ultrasound and photoacoustics. It provides anatomical, functional, and molecular data with superior resolution down to 30 μm. The system has a customizable touchscreen interface and is compact and portable. It can be used for applications in neurobiology, molecular biology, cardiology, and oncology to assess vascularity, perfusion, biomarkers, and response to therapy.
Here are 10 Software Tools and Platforms for Digital Pathology: 1. AperioImageScope 2. HCImage Hamamatsu software 3. OptraASSAYS 4. Image-Pro 5. APP Center
Digital pathology involves scanning glass slides to create high-resolution digital images that can be viewed, shared, and analyzed digitally. It replaces conventional microscopy with digital images viewed on a computer. The key components include a slide scanner, whole slide imaging software, image storage servers, and digital viewing and analysis tools. Digital pathology offers advantages like teleconsultation, remote diagnosis, AI image analysis, and more efficient workflows. However, it also faces challenges like high costs, large data storage needs, and the need for stable IT systems. Overall, digital pathology is poised to revolutionize cellular pathology and cancer diagnosis by enabling global collaboration, teleconsultation, and personalized medicine approaches.
The document discusses the WONIX initiative which aims to provide Wisconsin residents access to advanced molecular imaging clinical trials. It outlines WONIX's objectives to increase availability of imaging agents, improve imaging standards, establish data sharing, create a data warehouse, and conduct state-of-the-art clinical studies. A key focus is reducing uncertainties in quantitative PET imaging through harmonization of patient preparation, injection methods, scanning parameters, image processing and analysis across sites. The presentation describes WONIX's site training and qualification process which uses phantoms to ensure high image quality and calibrated scanners. Harmonizing reconstruction parameters across scanners can significantly reduce SUV value differences for patients scanned on different machines.
CyMap is a simple and versatile technology for monitoring microscopic particles or cells with a large field of view using a point light source and camera. It is small, robust, cheap, and uses tailored software for automated detection and control. The system provides portable, flexible imaging capabilities with variable field of view and resolution. It has been developed for live cell locating and tracking within incubators and other transparent vessels. The creators are seeking practical applications and ways to improve the technology, such as adding 3D imaging capabilities using two light sources.
In this deck from the 2014 HPC User Forum in Seattle, Jack Collins from the National Cancer Institute presents: Genomes to Structures to Function: The Role of HPC.
Watch the video presentation: http://wp.me/p3RLHQ-d28
Mudasir Jalal is seeking a career opportunity where innovation, quality, and hard work are valued. He has over 10 years of experience in administrative roles in India and Saudi Arabia, including positions as Senior Administrator, Lead Secretary, and Administrative Clerk. His skills include leadership, management, organization, problem solving, and proficiency in Microsoft Office programs. He holds degrees from the University of Kashmir and technical institutes.
1. O documento discute o arminianismo, uma visão teológica que enfatiza a responsabilidade humana e o caráter justo e amoroso de Deus no processo da salvação.
2. O arminianismo surgiu a partir das ideias do teólogo holandês Jacobus Arminius no século 16 em oposição ao calvinismo rígido de sua época.
3. Os principais pontos do arminianismo são a depravação total do homem, a eleição condicional, a expiação universal, a graça resistível
Este documento proporciona información sobre el inicio del año escolar 2015 en una institución educativa en la región de Tacna, Perú. Presenta datos sobre la matrícula de estudiantes y personal docente y administrativo. Además, evalúa aspectos relacionados con la matrícula oportuna, el mantenimiento de la infraestructura escolar, la acogida de estudiantes y padres, la contratación de docentes, el programa de alimentación escolar, los materiales educativos y la organización y planificación de la institución para el año escol
Directiva desarrollo e inicio -UGEL-TayacajaGerson Ames
Este documento establece orientaciones complementarias para el desarrollo y buen inicio del año escolar 2016 en las instituciones educativas de educación básica y técnico productivo de la jurisdicción de la Unidad de Gestión Educativa Local de Tayacaja. Se describen las líneas de acción nacional y regional, así como las líneas de acción específicas a nivel de la UGEL de Tayacaja, que incluyen el proceso de matrícula escolar, la aplicación de kits de evaluación, el inicio de labores escolares, y proces
Ethel Jane M. Delmonte has 13 years of experience in the BPO industry, currently working as an HR Learning and Communications Partner at kgb Philippines, Inc. She designs and facilitates learning programs, monitors training initiatives, and manages communication materials. Previously she held roles as Team Manager, Training Development Officer, and Customer Service Representative at kgb Philippines, Inc. She holds a Bachelor's degree in Mass Communication and a Master's degree in Educational Administration.
10 tips for effective communication skillsjobguide247
This document provides tips for improving communication skills. It discusses the importance of tone, tuning, and body language in communication. Some key points for effective communication include confidence, preparation, understanding your audience, using visual aids, maintaining eye contact and a natural speaking style for presentations, and removing distractions when listening or reading. Non-verbal communication such as gestures, posture, and facial expressions are also emphasized. Effective writing involves outlining and adopting a confident tone.
This document provides tips and sample answers for 10 common interview questions. It discusses popular questions like "Why do you want this job?", "What is your biggest weakness?", and "What do you know about our company?". For each question, it offers advice on what makes a strong answer and provides examples of how to effectively respond. The goal is to help job applicants prepare compelling answers that will make a positive impression on interviewers.
This document provides information on FICO credit scores from the three major US credit bureaus - Equifax, Experian, and TransUnion - including the score version, years available, score ranges, and prior brand names for each version dating back to the late 1990s. It shows that FICO scores have evolved over time, with the latest version being FICO Score 9, and that different credit bureaus may have had different brand names for the same FICO score version. Specialized FICO industry scores are also available for auto, bankcard/credit card, mortgage and other loan types.
arivis Vision4D - IMAGE ANALYSIS WHICH FITS YOUR DATA (4 pages, 2020)Johannes Amon
arivis Vision4D is the leading software for exploring and analysing large multi-dimensional image datasets created by confocal, Light Sheet, Multi-Photon or Electron Microscopy. arivis Vision4D can handle several hundred Gigabytes or terabytes of such image data as easily as if they were just a few megabytes in size.
OptraSCAN Fluorescence Scanning & Analysis is a Small Footprint, Automated Whole Slide Fluorescence & Brightfield Scanning With High-Resolution Imaging.
Visit-https://optrascan.com/scan/os-fl-multiplexing-fluorescence-scanner/
Contact us at-info@optrascan.com
(May 17, 2021) Introducing the Newton 7.0 Optical Imaging System: The Modalit...Scintica Instrumentation
In this webinar, Katie reviewed how optical imaging works and provided some common examples of how it’s used within preclinical research. She introduced the Newton 7.0 FT500, an optical imaging system manufactured by Vilber that included bioluminescence, fluorescence, and 3D tomography capabilities. She concluded the webinar by going through some of the most common questions/considerations that come up for those looking to add optical imaging capabilities to their lab.
The Newton 7.0 is a highly sensitive optical imaging system dedicated to preclinical imaging of small animals in vivo, and may also be used on a variety of in vitro and ex vivo samples. It combines the best optics and animal handling features for high-quality image data and quantification. The Newton 7.0 system is capable of bioluminescence, fluorescence as well as 3D tomographic imaging.
The system is:
User-friendly
Does not require any radiation to acquire images
Is non-invasive, allowing for longitudinal studies
Allows for up to 5 mice or 3 rats to be imaged simultaneously
The Newton 7.0 is highly sensitive and can be used in a wide variety of research applications. Various bioluminescent reporters like firefly luciferase and many fluorescent molecular reagents can be used to visualize and track tumors, monitor disease or inflammation development, target molecules to nanoparticles or follow biodistribution and pharmacokinetics noninvasively.
Whether you are just exploring the idea of adding optical capabilities to your lab or you’ve been imaging for years, you won’t want to miss the opportunity to learn about this cool new technology and ask questions about your specific research applications and study design.
Learning objectives:
How does optical imaging work?
Common applications of preclinical optical imaging
A product overview: Newton 7.0 FT500
What makes the system unique?
How to add optical imaging capabilities to your lab?
In collaboration with The Keenan Research Center for Biomedical Science, Toronto
Production Bioinformatics, emphasis on ProductionChris Dwan
Production bioinformatics at Sema4 can be thought of as data ops - a peer to the lab ops organization. We operate 24/7 to deliver correct and timely results on NGS and other data for thousands of samples per week. This deck introduces the Prod BI organization and systems architecture with a focus on what it takes to run bioinformatics in production rather than for R&D or pure research.
The document summarizes the development and validation of a hyperspectral imaging microscopy system called Xanoscope for pathology applications. Key points:
1) Xanoscope allows for fast, automated acquisition of hyperspectral images over contiguous wavelength bands with high spatial resolution, reducing scan times significantly compared to previous methods.
2) Validation experiments showed Xanoscope produces quantitative measurements and improves signal-to-noise ratio through optimized camera settings and image accumulation.
3) Xanoscope was used to scan 10 multiplexed fluorophores in cell lines, and linear unmixing was able to measure the individual contribution of each fluorophore at pixel-level for advanced pathological analysis.
The Genome Voyager platform enables institutions to analyze and interpret sequencing data from targeted gene panels, exomes and whole genomes to streamline the interpretation and reporting process. It provides easy-to-use filtering and visualization capabilities, facilitates collaboration between users, and utilizes a knowledge base to consolidate information and rapidly expand understanding of variants and conditions. Interested institutions can join the beta program to evaluate this solution and provide feedback.
Digital pathology incorporates the acquisition, sharing and interpretation of pathology information digitally. It involves scanning glass slides to create high-resolution digital images that can be viewed on a computer. This replaces the traditional microscope with a slide scanner and reading station. Key components include the slide scanner, whole slide imaging software, and digital servers for image storage and analysis. Digital pathology allows for remote consultation, education, research and improved efficiency. Challenges include high costs initially and full adoption may require standards. The future of pathology is moving towards more automation and integration of artificial intelligence for analysis.
dkNET Webinar: The Human BioMolecular Atlas Program (HuBMAP) 10/14/2022dkNET
Abstract
HuBMAP aims to catalyze the development of an open, global framework for comprehensively mapping the human body at cellular resolution. HuBMAP goals include: (1) Accelerate the development of the next generation of tools and techniques for constructing high resolution spatial tissue maps. (2) Generate foundational 3D tissue atlases. (3) Establish an open data platform. (4) Coordinate and collaborate with other funding agencies, programs, and the biomedical research community. (5) Support projects that demonstrate the value of the resources developed by the program. The HuBMAP Portal can be found at https://portal.hubmapconsortium.org and the Visible Human MOOC describes the compilation and coverage of HuBMAP data, demonstrates new single-cell analysis and mapping techniques, and introduces major features of the HuBMAP portal.
The top 3 key questions that HuBMAP can answer:
1. What assay types are best to map the human body in 3D and across scales?
2. What Common Coordinate System (CCF) is best to construct the Human Reference Atlas?
3. How can others help construct and/or use the Human Reference Atlas?
Presenters:
Katy Börner, PhD, Victor H. Yngve Distinguished Professor of Engineering and Information Science, Department of Intelligent Systems Engineering and Information Science, Indiana University
Jeffrey Spraggins, PhD, Assistant Professor, Department of Cell and Developmental Biology, Vanderbilt University
Upcoming webinars schedule: https://dknet.org/about/webinar
This document describes a high resolution multi-modal imaging platform that combines ultrasound and photoacoustics. It provides anatomical, functional, and molecular data with superior resolution down to 30 μm. The system has a customizable touchscreen interface and is compact and portable. It can be used for applications in neurobiology, molecular biology, cardiology, and oncology to assess vascularity, perfusion, biomarkers, and response to therapy.
Here are 10 Software Tools and Platforms for Digital Pathology: 1. AperioImageScope 2. HCImage Hamamatsu software 3. OptraASSAYS 4. Image-Pro 5. APP Center
Digital pathology involves scanning glass slides to create high-resolution digital images that can be viewed, shared, and analyzed digitally. It replaces conventional microscopy with digital images viewed on a computer. The key components include a slide scanner, whole slide imaging software, image storage servers, and digital viewing and analysis tools. Digital pathology offers advantages like teleconsultation, remote diagnosis, AI image analysis, and more efficient workflows. However, it also faces challenges like high costs, large data storage needs, and the need for stable IT systems. Overall, digital pathology is poised to revolutionize cellular pathology and cancer diagnosis by enabling global collaboration, teleconsultation, and personalized medicine approaches.
The document discusses the WONIX initiative which aims to provide Wisconsin residents access to advanced molecular imaging clinical trials. It outlines WONIX's objectives to increase availability of imaging agents, improve imaging standards, establish data sharing, create a data warehouse, and conduct state-of-the-art clinical studies. A key focus is reducing uncertainties in quantitative PET imaging through harmonization of patient preparation, injection methods, scanning parameters, image processing and analysis across sites. The presentation describes WONIX's site training and qualification process which uses phantoms to ensure high image quality and calibrated scanners. Harmonizing reconstruction parameters across scanners can significantly reduce SUV value differences for patients scanned on different machines.
CyMap is a simple and versatile technology for monitoring microscopic particles or cells with a large field of view using a point light source and camera. It is small, robust, cheap, and uses tailored software for automated detection and control. The system provides portable, flexible imaging capabilities with variable field of view and resolution. It has been developed for live cell locating and tracking within incubators and other transparent vessels. The creators are seeking practical applications and ways to improve the technology, such as adding 3D imaging capabilities using two light sources.
In this deck from the 2014 HPC User Forum in Seattle, Jack Collins from the National Cancer Institute presents: Genomes to Structures to Function: The Role of HPC.
Watch the video presentation: http://wp.me/p3RLHQ-d28
The document discusses the Multisizer 4 particle counter, which uses the Coulter principle to provide high resolution particle sizing and counting in a single measurement. It analyzes particles from 0.4 μm to 1600 μm using various aperture sizes and its digital pulse processor allows for flexible data analysis. The software is easy to use and compliant with regulatory standards, while the instrument's design ensures reliable, repeatable results for applications across industries.
The VISpION sensor system uses fractal analysis to greatly improve optical sensing capabilities for material analysis, quality control, and process analysis. It can identify patterns in chaotic surfaces and processes faster, more accurately, and at lower cost than conventional sensors. The system is versatile, easy to adapt to different applications, and stores and displays analysis data in real time. It was developed over many years and through over 30 patented inventions to be a single, universal solution for industrial and scientific sensing applications.
In this second session of the IVM webinar series, we take a deeper look at the IVM all-in-one intravital microscope. The IVM system is a carefully engineered state-of-the-art intravital fluorescence microscopy platform optimized to perform real-time imaging of dynamic phenomena in in vivo tissues at a cellular level. This technique can serve as a next generation core technology to elucidate the pathophysiology of various human diseases and assist in the discovery of new cures. We will review the different modules of the system allowing for intravital confocal and/or two-photon imaging, along with the features and benefits of each set-up.
Key Features
All-in-one intravital microscopy system with a flexible design for modification and updates
Optimized for in vivo observation of dynamic processes in mouse models of human disease
Four-color simultaneous confocal/two-photon imaging
Sub-µm image resolution and ultrafast video-rate imaging (max. 100 fps - 512x512 pixels)
Integrated automatic high-precision motion artifact compensation
Key Applications
In Vivo 4D cell imaging, tracking and monitoring
In Vivo visualization of dynamic molecular & cellular mechanisms
In Vivo efficacy monitoring of novel drug compound
In Vivo monitoring of material delivery target tissues
In Vivo real-time imaging of microcirculation
This document provides an overview of artificial intelligence in pathology. It discusses digital pathology and whole slide imaging, which allow pathologists to view digital images of tissue slides. Artificial intelligence techniques like deep learning can be applied to these digital images for tasks like classification, segmentation, and image analysis. Specifically, AI has applications in pathology for detecting features in images like mitotic figures, quantifying biomarkers, and assisting with cancer grading. Studies have shown AI can help pathologists by improving accuracy, efficiency and reproducibility of diagnoses.
arivis Vision4D - IMAGE ANALYSIS WHICH FITS YOUR DATA (2 pages, 2020)Johannes Amon
arivis Vision4D is the leading software for exploring and analysing large multi-dimensional image datasets created by confocal, Light Sheet, Multi-Photon or Electron Microscopy. arivis Vision4D can handle several hundred Gigabytes or terabytes of such image data as easily as if they were just a few megabytes in size.
3. 1
www.perkinelmer.com/volocity
To get to that next important insight, you need to go where your
biology leads you. The challenge is that biology lives in three
dimensions. How can you know the shape of a structure unless you
view it from every direction? How can you know its size unless you measure the volume? How
can you tell whether two structures are close together or intertwined unless you can see both
completely and from every angle? Volocity 3D Image Analysis Software enables you to make
discoveries and answer complex questions that are beyond the limitations of 2D.
Turn observations into understanding
Moving seamlessly among restoration, visualization and quantitation, Volocity software is
designed for true 3D analysis of fluorescence images. View your cells from every angle. Measure
shapes, volumes and distances. Relate cellular structure to function with exceptional precision
and speed. Compare samples and identify trends. Produce publication-ready tables and charts.
Take your image analysis to a new dimension with true 3D image analysis.
A powerful solution for every lab
Designed for ease of use and exceptional performance, Volocity software is compatible with
most confocal microscopy, widefield and high content screening systems – one 3D analysis
solution and one learning curve for all your fluorescence imaging systems. With flexible licensing
options, it can serve individual researchers as well as departments and entire organizations.
Because it is also supported by world-class technical support, training and expertise, you can
count on Volocity software to accelerate your research through your entire 3D imaging process.
Flexibility, ease of use and powerful performance: That’s why there are thousands of users
around the globe and thousands of peer-reviewed papers referencing Volocity software – the
universal solution for 3D image analysis.
A UNIVERSAL
SOLUTION FOR
3DIMAGE
ANALYSIS
ADHESION
FISH
GENE EXPRESSION
EMBRYOGENESIS
CELL SIGNALING
TRAFFICKINGRESLICE DATA
CELL CYCLE
RESOLUTION
PROLIFERATION
INFECTION
DIFFERENTIATION
MITOSIS
PROTEIN TRANSPORT
PROLIFERATION
EXPLORE
EMBRYOGENESIS
LINEAGE
PRECISE RESULTS
DIFFERENTIATION
INTERACTIVE RENDERING
INFECTION
LINEAGE
MOTILITY
MOTILITY
MEASURE
MEASURE
INVASION
CELL SIGNALING
PROTEIN TRANSPORT
GENE EXPRESSION
QUALITY
QUALITY
MORPHOGENESIS
APOPTOSIS
INVASION
RECEPTOR ACTIVATION
GASTRULATION
MORPHOGENESIS
PRECISION
PRECISION
SYNAPTIC VESICLES
RAPID MEASUREMENT
TRAFFICKING
EXPLORE
Volocity Software
RECEPTOR ACTIVATION
SIGNAL TRANSDUCT
VASCULAR GROWTH
REGULATION
4. 2
REVEAL MORE.
RELATE MORE.
REALIZE MORE.
Whether you are studying cells, tissues or organisms, Volocity
software lets you see relationships you haven’t seen before and
then validate your observations. Because seeing is not enough
anymore, you have to prove it with quantitative results.
Explore, interact and publish in 3D
VOLOCITY VISUALIZATION
Get a full picture of biological processes and uncover cellular relationships you can’t see
with 2D analysis, with rapid, interactive, high-resolution volume rendering of time-resolved,
multichannel 3D data sets.
• Import a wide range of file formats
• Drag and drop your image files into the software to interactively explore in 3D
• Rotate, zoom and fly through rendered objects in real time
• Choose from rendering options including solid surfaces, varying opacity and shadows
• See how the three dimensions intersect at any point
• Explore structures and processes from any angle in fixed and dynamic experiments
• Prepare stunning images for publication
• Produce compelling movies for presentation
Volocity Visualization used to
clearly show kinetochores as solid
spheres within the nucleus.
Tracking overlaid with 3D image data
using Volocity Quantitation.
Show dynamic events in 3D over time and
create publication-quality movies.
Cardiac tube of a Drosophila larva rendered using
Volocity Visualization.
• UltraVIEW®
VoX – 3D Live Cell Imaging
system powered by Volocity for seamless
acquisition to analysis
• Operetta®
– High Content Imaging system
• Other fluorescence microscopes
and imaging systems – Volocity
software supports files from most
confocal, widefield and high content
imaging systems
Acquire 3D image stacks from the
instrument of your choosing
5. 3
www.perkinelmer.com/volocity
Measure, analyze and relate your discoveries
Gain greater insight into your biological
questions – and share it sooner
Volocity Restoration – Quickly and easily
improve the quality and resolution of your
widefield and confocal images to gain greater
insight. Reveal more detail for visualization
and achieve more accurate quantitation with
deconvolved data.
• Create calculated PSFs or use a measured
PSF from your microscope
• Batch process multiple data sets
• Further improve the quality of image
data acquired on the UltraVIEW VoX
and Operetta systems
See your cells with stunning clarity
VOLOCITY QUANTITATION
Validate and confirm your observations of cellular structure with
accurate 3D measurement and analysis.
• Compare and relate cellular organelles within and between samples
for a better understanding of intracellular and intercellular relationships
• Perform morphological analysis
• Measure fluorescence localization and colocalization
• Measure distances within and between organelles
• Automatically track large numbers of cells
• Refine your experiment quickly and easily with immediate feedback
• Overlay measured objects on image data
• Automatically measure or analyze multiple samples with batch processing
• Utilize specific analysis tools for quantifying colocalization, ratioed
images, FRAP and FRET
• Create charts and graphs to identify trends, and export for publication
or further analysis
Measure multiple populations of intracellular
and intercellular structures and show relationships
between measured objects.
6. 4
Volocity software’s flexibility is unrivaled, allowing you to tailor your
3D image analysis to the specific needs of your lab and your research.
It has a range of powerful tools to choose from, flexible licensing to
suit every size of lab from individual researchers to entire organizations,
and compatibility with a wide range of imaging instruments.
A SOLUTION THAT’S
FLEXIBLETO MEET YOUR LAB’S NEEDS
Volocity Software – A comprehensive solution with benefits throughout your workflow
Supports a wide range of file formats
Save time with a single learning curve by using one solution for all your lab’s confocal and widefield
fluorescence microscopes and high content screening systems
Batch processing
Increase productivity by avoiding repetitive actions and treating multiple data sets in the same way;
compare measurements from multiple experiments to validate your results
Parallel processing Utilize multiple processors for faster results
A 64-bit Windows®
solution Support very large data sets
Suitable for Mac OS X, 64-bit and 32-bit Windows Choose your preferred operating system
Flexible licensing options
Combine and share software licenses across networks with the flexible, cross-platform Imaging License Server
to provide a cost-effective solution for individual labs and large institutes
Distributed computing (optional) Accelerate processing-intensive tasks with the Imaging Computer Server and get your results faster
FRAP and Ratio plug-ins (optional) Extend the functionality of Volocity software for online FRAP and ratio acquisition and analysis
QUANTITATION
Detection and measurement of objects in 2D and 3D See results immediately so you can refine your protocol quickly and easily
Population-based and relative measurements Work in biological units and generate measurements your way – by cell, tissue or whatever you choose
Automatic tracking of large numbers of objects in
time-resolved 2D and 3D
Improve precision to understand samples in greater detail
Chart and graph capabilities Display data and identify trends and patterns for a greater understanding sooner
Overlaying of objects and tracks with 3D image data Validate and confirm results by gaining a better understanding of how they were derived
VISUALIZATION
Rapid, interactive, high-resolution rendering of
multichannel 3D volumes
Rotate, zoom and fly through samples to explore your data sets in new ways
Choice of rendering options Choose how to display your data for better understanding or to prepare for publication
Images and movies for publication Share and publish results as images, QuickTime®
, AVI and WMV movies, or QuickTime®
Virtual Reality movies
RESTORATION
Choice of restoration algorithms
Create the highest-quality images with ultrafast improvement of resolution in X and Y
or iterative restoration in X, Y and Z
PSF flexibility across imaging technology
Calculate PSFs for confocal, spinning disk, two-photon and widefield imaging modalities,
or use a measured PSF
7. 5
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Critical knowledge and services to accelerate
your research
• Our technical support desk provides customers
with an efficient, fast response to queries and
problems
• Our expert imaging team understands your
science and provides specialist applications
support and training to get you to where you
want to be
• A range of online resources, including technical
notes, product manuals, tutorials, publication
notes, citations library and case studies, are
available on our website to support you
• A 12-month software maintenance agreement
(SMA) ensures that you have access to the latest
versions of Volocity software
• The ability to purchase additional SMAs after the
initial 12-month period saves on upgrades
A complete collection of cellular imaging
solutions to choose from
• Columbus™
Image Data Management and
Analysis System – A universal solution for data
management and analysis that allows you to
quickly and safely store and share images across
a network. Drag and drop images from Volocity
software into the Columbus system for storage
and access to 2D analysis, so you can measure
changes in cell properties. Or drag and drop
images from the Columbus system into Volocity
software for 3D visualization and analysis.
Backed by a global leader, Volocity software extends beyond advanced
software to give you a comprehensive solution – one that includes world-
class technical support, training and expertise.
EXPERIENCE A WORLD
OF EXPERTISE,
SUPPORT AND
EXCELLENCE
• Operetta High Content Imaging System – An
intuitive system designed for biologists who are
looking for the verification that high content
analysis affords. It’s the efficient, effective way
to analyze and quantify your samples, and move
your research forward.
• Opera®
High Content Screening System – The
ultimate in high throughput, speed and resolution,
the Opera system is ideal for flexible, scalable
assay development and robust screening.
• UltraVIEW VoX 3D Live Cell Imaging System
– The only 3D spinning disk solution that takes
you from acquisition to analysis for multiple
applications. Designed for high speed, maximum
sample protection and unprecedented 3D results,
the system is also highly configurable to your
research needs. And with high-performance
Volocity software at its core, you get a fully
integrated software solution to turn images
into results.
Download the Volocity demo software and see
for yourself how easy it can be to interact with
and analyze your images in 3D.
Try the Volocity software for free. Simply
visit www.perkinelmer.com/volocitydemo.