SlideShare a Scribd company logo
BOYER–MOORE STRING
SEARCH ALGORITHM
SeyedHamid Shekarforoush
Bowling Green State University
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
0
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
1
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
2
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
3
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
4
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
5
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
6
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
7
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
8
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
9
C G A T
SEARCHING A SPECIFIC PATTERN IN A
TARGET TEXT
THE NAÏVE METHOD
G T T T A C G G T C T T C T T G G C C G A T T A
# comparisons
27
C G A T
BOYER–MOORE STRING SEARCH ALGORITHM
 developed by Robert S. Boyer and J Strother
Moore in 1977
 Smart naïve method
 tries to match the pattern with target text
 Use two rules to skip unnecessary matches
 Match from the end of pattern
FIRST RULE: THE BAD CHARACTER RULE (BCR)
 Text : bowling green state university computer science department
 Pattern : science
Letter s c i e n *
BCR 6 1 4 1 2 7
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E 7 shifts
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E 7 shifts
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E 7 shifts
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E 4 shifts
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E 7 shifts
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E 7 shifts
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E1 shifts
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E
FIRST RULE: THE BAD CHARACTER RULE (BCR)
B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E
Letter s c i e n *
BCR 6 1 4 1 2 7
S C I E N C E
BUILDING BCR TABLE
• Length – index – 1
• The BCR value can’t be less than 1
• If we have repeated letters we count the minimum BCR value, because it
should be the rightmost occurrence of the letter
• We use symbol “*” for any other letter that is not in the pattern and the BC
value is the length of the pattern, because we can skip the whole pattern
knowing that character “*” is not in the pattern.
BUILDING BCR TABLE • Length – index – 1
• Length = 7
index 0 1 2 3 4 5 6 7
pattern s c i e n c e *
BCR 6 5 4 3 2 1 0>>>1 7
•Length – index – 1
•7-0-1 =6
•The BCR value can’t be less than 1
•Why?
BUILDING BCR TABLE • Length – index – 1
• Length = 7
index 0 1 2 3 4 5 6 7
pattern s c i e n c e *
BCR 6 5 4 3 2 1 0>>>1 7
•Minimum BCR for repeated letters
Letter s c i e n *
BCR 6 1 4 1 2 7
SECOND RULE: GOOD SUFFIX RULE (GSR)
 It used when we have some
successful matches
 Reusing the already matched
string
SECOND RULE: GOOD SUFFIX RULE (GSR)
6 shifts
BOTH RULES TOGETHER
 At each step when we get a mismatch and we want to shift, the algorithm
use both rules and use the bigger shift
BOTH RULES TOGETHER
Letter T C G *
BCR 2 3 1 10
 BCR = 2 shifts  GSR = 6 shifts
PERFORMANCE
 The Boyer–Moore is work faster
and better with longer pattern
with less repeated characters
 Most of the time the BCR win
over the GSR
 many implementation don’t use
the GSR at all
Algorithm Preprocessing time Matching time
Naïve 0 (no preprocessing) Θ((n−m)m)
Rabin–Karp Θ(m) average Θ(n + m),
worst
Θ((n−m)m)
Finite-state Θ(mk) Θ(n)
Knuth–Morris–Pratt Θ(m) Θ(n)
Boyer–Moore Θ(m + k) best Ω(n/m), worst O(n)
Bitap Θ(m + k) O(mn)
REFRENCES
 [1] Robert S. Boyer and J. Strother Moore. 1977. A fast string searching
algorithm. Commun. ACM 20, 10 (October 1977), 762-772.
DOI=http://dx.doi.org/10.1145/359842.359859
 [2] Wikipedia contributors, "Boyer–Moore string search algorithm," Wikipedia,
The Free Encyclopedia,
https://en.wikipedia.org/w/index.php?title=Boyer%E2%80%93Moore_string_sear
ch_algorithm&oldid=688111014 (accessed November 20, 2015).

More Related Content

What's hot

String matching algorithms-pattern matching.
String matching algorithms-pattern matching.String matching algorithms-pattern matching.
String matching algorithms-pattern matching.
Swapan Shakhari
 
Lecture 1,2
Lecture 1,2Lecture 1,2
Lecture 1,2
shah zeb
 
Max flow min cut
Max flow min cutMax flow min cut
Max flow min cut
Mayank Garg
 
Pattern matching
Pattern matchingPattern matching
Pattern matchingshravs_188
 
module6_stringmatchingalgorithm_2022.pdf
module6_stringmatchingalgorithm_2022.pdfmodule6_stringmatchingalgorithm_2022.pdf
module6_stringmatchingalgorithm_2022.pdf
Shiwani Gupta
 
String Matching Algorithms-The Naive Algorithm
String Matching Algorithms-The Naive AlgorithmString Matching Algorithms-The Naive Algorithm
String Matching Algorithms-The Naive Algorithm
Adeel Rasheed
 
04 brute force
04 brute force04 brute force
04 brute force
Hira Gul
 
Leftist heap
Leftist heapLeftist heap
Leftist heap
Shuvro Roy
 
String matching algorithms
String matching algorithmsString matching algorithms
String matching algorithms
Mahdi Esmailoghli
 
Fp growth algorithm
Fp growth algorithmFp growth algorithm
Fp growth algorithm
Pradip Kumar
 
Bruteforce algorithm
Bruteforce algorithmBruteforce algorithm
Bruteforce algorithm
Rezwan Siam
 
Boyer moore
Boyer mooreBoyer moore
Boyer moore
akruthi k
 
sum of subset problem using Backtracking
sum of subset problem using Backtrackingsum of subset problem using Backtracking
sum of subset problem using Backtracking
Abhishek Singh
 
String matching, naive,
String matching, naive,String matching, naive,
String matching, naive,
Amit Kumar Rathi
 
Boyer moore algorithm
Boyer moore algorithmBoyer moore algorithm
Boyer moore algorithm
AYESHA JAVED
 
Boyre Moore Algorithm | Computer Science
Boyre Moore Algorithm | Computer ScienceBoyre Moore Algorithm | Computer Science
Boyre Moore Algorithm | Computer Science
Transweb Global Inc
 
Linked list implementation of Queue
Linked list implementation of QueueLinked list implementation of Queue
Linked list implementation of Queue
Dr. Sindhia Lingaswamy
 

What's hot (20)

String matching algorithms-pattern matching.
String matching algorithms-pattern matching.String matching algorithms-pattern matching.
String matching algorithms-pattern matching.
 
Lecture 1,2
Lecture 1,2Lecture 1,2
Lecture 1,2
 
Max flow min cut
Max flow min cutMax flow min cut
Max flow min cut
 
Pattern matching
Pattern matchingPattern matching
Pattern matching
 
module6_stringmatchingalgorithm_2022.pdf
module6_stringmatchingalgorithm_2022.pdfmodule6_stringmatchingalgorithm_2022.pdf
module6_stringmatchingalgorithm_2022.pdf
 
String Matching Algorithms-The Naive Algorithm
String Matching Algorithms-The Naive AlgorithmString Matching Algorithms-The Naive Algorithm
String Matching Algorithms-The Naive Algorithm
 
04 brute force
04 brute force04 brute force
04 brute force
 
Leftist heap
Leftist heapLeftist heap
Leftist heap
 
String matching algorithms
String matching algorithmsString matching algorithms
String matching algorithms
 
Fp growth algorithm
Fp growth algorithmFp growth algorithm
Fp growth algorithm
 
Bruteforce algorithm
Bruteforce algorithmBruteforce algorithm
Bruteforce algorithm
 
Boyer moore
Boyer mooreBoyer moore
Boyer moore
 
sum of subset problem using Backtracking
sum of subset problem using Backtrackingsum of subset problem using Backtracking
sum of subset problem using Backtracking
 
String matching, naive,
String matching, naive,String matching, naive,
String matching, naive,
 
Boyer moore algorithm
Boyer moore algorithmBoyer moore algorithm
Boyer moore algorithm
 
Boyre Moore Algorithm | Computer Science
Boyre Moore Algorithm | Computer ScienceBoyre Moore Algorithm | Computer Science
Boyre Moore Algorithm | Computer Science
 
Linked list implementation of Queue
Linked list implementation of QueueLinked list implementation of Queue
Linked list implementation of Queue
 
Knapsack Problem
Knapsack ProblemKnapsack Problem
Knapsack Problem
 
Data structures
Data structuresData structures
Data structures
 
Disjoint sets
Disjoint setsDisjoint sets
Disjoint sets
 

Recently uploaded

May Marketo Masterclass, London MUG May 22 2024.pdf
May Marketo Masterclass, London MUG May 22 2024.pdfMay Marketo Masterclass, London MUG May 22 2024.pdf
May Marketo Masterclass, London MUG May 22 2024.pdf
Adele Miller
 
OpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoam
OpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoamOpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoam
OpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoam
takuyayamamoto1800
 
Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...
Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...
Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...
Shahin Sheidaei
 
BoxLang: Review our Visionary Licenses of 2024
BoxLang: Review our Visionary Licenses of 2024BoxLang: Review our Visionary Licenses of 2024
BoxLang: Review our Visionary Licenses of 2024
Ortus Solutions, Corp
 
First Steps with Globus Compute Multi-User Endpoints
First Steps with Globus Compute Multi-User EndpointsFirst Steps with Globus Compute Multi-User Endpoints
First Steps with Globus Compute Multi-User Endpoints
Globus
 
Vitthal Shirke Java Microservices Resume.pdf
Vitthal Shirke Java Microservices Resume.pdfVitthal Shirke Java Microservices Resume.pdf
Vitthal Shirke Java Microservices Resume.pdf
Vitthal Shirke
 
Vitthal Shirke Microservices Resume Montevideo
Vitthal Shirke Microservices Resume MontevideoVitthal Shirke Microservices Resume Montevideo
Vitthal Shirke Microservices Resume Montevideo
Vitthal Shirke
 
GOING AOT WITH GRAALVM FOR SPRING BOOT (SPRING IO)
GOING AOT WITH GRAALVM FOR  SPRING BOOT (SPRING IO)GOING AOT WITH GRAALVM FOR  SPRING BOOT (SPRING IO)
GOING AOT WITH GRAALVM FOR SPRING BOOT (SPRING IO)
Alina Yurenko
 
Top 7 Unique WhatsApp API Benefits | Saudi Arabia
Top 7 Unique WhatsApp API Benefits | Saudi ArabiaTop 7 Unique WhatsApp API Benefits | Saudi Arabia
Top 7 Unique WhatsApp API Benefits | Saudi Arabia
Yara Milbes
 
Introducing Crescat - Event Management Software for Venues, Festivals and Eve...
Introducing Crescat - Event Management Software for Venues, Festivals and Eve...Introducing Crescat - Event Management Software for Venues, Festivals and Eve...
Introducing Crescat - Event Management Software for Venues, Festivals and Eve...
Crescat
 
In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...
In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...
In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...
Juraj Vysvader
 
Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...
Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...
Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...
Globus
 
openEuler Case Study - The Journey to Supply Chain Security
openEuler Case Study - The Journey to Supply Chain SecurityopenEuler Case Study - The Journey to Supply Chain Security
openEuler Case Study - The Journey to Supply Chain Security
Shane Coughlan
 
Developing Distributed High-performance Computing Capabilities of an Open Sci...
Developing Distributed High-performance Computing Capabilities of an Open Sci...Developing Distributed High-performance Computing Capabilities of an Open Sci...
Developing Distributed High-performance Computing Capabilities of an Open Sci...
Globus
 
Large Language Models and the End of Programming
Large Language Models and the End of ProgrammingLarge Language Models and the End of Programming
Large Language Models and the End of Programming
Matt Welsh
 
Prosigns: Transforming Business with Tailored Technology Solutions
Prosigns: Transforming Business with Tailored Technology SolutionsProsigns: Transforming Business with Tailored Technology Solutions
Prosigns: Transforming Business with Tailored Technology Solutions
Prosigns
 
Automated software refactoring with OpenRewrite and Generative AI.pptx.pdf
Automated software refactoring with OpenRewrite and Generative AI.pptx.pdfAutomated software refactoring with OpenRewrite and Generative AI.pptx.pdf
Automated software refactoring with OpenRewrite and Generative AI.pptx.pdf
timtebeek1
 
Quarkus Hidden and Forbidden Extensions
Quarkus Hidden and Forbidden ExtensionsQuarkus Hidden and Forbidden Extensions
Quarkus Hidden and Forbidden Extensions
Max Andersen
 
GlobusWorld 2024 Opening Keynote session
GlobusWorld 2024 Opening Keynote sessionGlobusWorld 2024 Opening Keynote session
GlobusWorld 2024 Opening Keynote session
Globus
 
Graspan: A Big Data System for Big Code Analysis
Graspan: A Big Data System for Big Code AnalysisGraspan: A Big Data System for Big Code Analysis
Graspan: A Big Data System for Big Code Analysis
Aftab Hussain
 

Recently uploaded (20)

May Marketo Masterclass, London MUG May 22 2024.pdf
May Marketo Masterclass, London MUG May 22 2024.pdfMay Marketo Masterclass, London MUG May 22 2024.pdf
May Marketo Masterclass, London MUG May 22 2024.pdf
 
OpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoam
OpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoamOpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoam
OpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoam
 
Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...
Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...
Gamify Your Mind; The Secret Sauce to Delivering Success, Continuously Improv...
 
BoxLang: Review our Visionary Licenses of 2024
BoxLang: Review our Visionary Licenses of 2024BoxLang: Review our Visionary Licenses of 2024
BoxLang: Review our Visionary Licenses of 2024
 
First Steps with Globus Compute Multi-User Endpoints
First Steps with Globus Compute Multi-User EndpointsFirst Steps with Globus Compute Multi-User Endpoints
First Steps with Globus Compute Multi-User Endpoints
 
Vitthal Shirke Java Microservices Resume.pdf
Vitthal Shirke Java Microservices Resume.pdfVitthal Shirke Java Microservices Resume.pdf
Vitthal Shirke Java Microservices Resume.pdf
 
Vitthal Shirke Microservices Resume Montevideo
Vitthal Shirke Microservices Resume MontevideoVitthal Shirke Microservices Resume Montevideo
Vitthal Shirke Microservices Resume Montevideo
 
GOING AOT WITH GRAALVM FOR SPRING BOOT (SPRING IO)
GOING AOT WITH GRAALVM FOR  SPRING BOOT (SPRING IO)GOING AOT WITH GRAALVM FOR  SPRING BOOT (SPRING IO)
GOING AOT WITH GRAALVM FOR SPRING BOOT (SPRING IO)
 
Top 7 Unique WhatsApp API Benefits | Saudi Arabia
Top 7 Unique WhatsApp API Benefits | Saudi ArabiaTop 7 Unique WhatsApp API Benefits | Saudi Arabia
Top 7 Unique WhatsApp API Benefits | Saudi Arabia
 
Introducing Crescat - Event Management Software for Venues, Festivals and Eve...
Introducing Crescat - Event Management Software for Venues, Festivals and Eve...Introducing Crescat - Event Management Software for Venues, Festivals and Eve...
Introducing Crescat - Event Management Software for Venues, Festivals and Eve...
 
In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...
In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...
In 2015, I used to write extensions for Joomla, WordPress, phpBB3, etc and I ...
 
Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...
Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...
Exploring Innovations in Data Repository Solutions - Insights from the U.S. G...
 
openEuler Case Study - The Journey to Supply Chain Security
openEuler Case Study - The Journey to Supply Chain SecurityopenEuler Case Study - The Journey to Supply Chain Security
openEuler Case Study - The Journey to Supply Chain Security
 
Developing Distributed High-performance Computing Capabilities of an Open Sci...
Developing Distributed High-performance Computing Capabilities of an Open Sci...Developing Distributed High-performance Computing Capabilities of an Open Sci...
Developing Distributed High-performance Computing Capabilities of an Open Sci...
 
Large Language Models and the End of Programming
Large Language Models and the End of ProgrammingLarge Language Models and the End of Programming
Large Language Models and the End of Programming
 
Prosigns: Transforming Business with Tailored Technology Solutions
Prosigns: Transforming Business with Tailored Technology SolutionsProsigns: Transforming Business with Tailored Technology Solutions
Prosigns: Transforming Business with Tailored Technology Solutions
 
Automated software refactoring with OpenRewrite and Generative AI.pptx.pdf
Automated software refactoring with OpenRewrite and Generative AI.pptx.pdfAutomated software refactoring with OpenRewrite and Generative AI.pptx.pdf
Automated software refactoring with OpenRewrite and Generative AI.pptx.pdf
 
Quarkus Hidden and Forbidden Extensions
Quarkus Hidden and Forbidden ExtensionsQuarkus Hidden and Forbidden Extensions
Quarkus Hidden and Forbidden Extensions
 
GlobusWorld 2024 Opening Keynote session
GlobusWorld 2024 Opening Keynote sessionGlobusWorld 2024 Opening Keynote session
GlobusWorld 2024 Opening Keynote session
 
Graspan: A Big Data System for Big Code Analysis
Graspan: A Big Data System for Big Code AnalysisGraspan: A Big Data System for Big Code Analysis
Graspan: A Big Data System for Big Code Analysis
 

Boyer–Moore string search algorithm

  • 1. BOYER–MOORE STRING SEARCH ALGORITHM SeyedHamid Shekarforoush Bowling Green State University
  • 2. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 0 C G A T
  • 3. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 1 C G A T
  • 4. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 2 C G A T
  • 5. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 3 C G A T
  • 6. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 4 C G A T
  • 7. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 5 C G A T
  • 8. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 6 C G A T
  • 9. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 7 C G A T
  • 10. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 8 C G A T
  • 11. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 9 C G A T
  • 12. SEARCHING A SPECIFIC PATTERN IN A TARGET TEXT THE NAÏVE METHOD G T T T A C G G T C T T C T T G G C C G A T T A # comparisons 27 C G A T
  • 13. BOYER–MOORE STRING SEARCH ALGORITHM  developed by Robert S. Boyer and J Strother Moore in 1977  Smart naïve method  tries to match the pattern with target text  Use two rules to skip unnecessary matches  Match from the end of pattern
  • 14. FIRST RULE: THE BAD CHARACTER RULE (BCR)  Text : bowling green state university computer science department  Pattern : science Letter s c i e n * BCR 6 1 4 1 2 7
  • 15. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E
  • 16. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E 7 shifts
  • 17. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E 7 shifts
  • 18. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E 7 shifts
  • 19. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E 4 shifts
  • 20. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E 7 shifts
  • 21. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E 7 shifts
  • 22. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E1 shifts
  • 23. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E
  • 24. FIRST RULE: THE BAD CHARACTER RULE (BCR) B OW L I NG G R E E N S T A T E U N I V E R S I T Y C OMP U T E R S C I E N C E Letter s c i e n * BCR 6 1 4 1 2 7 S C I E N C E
  • 25. BUILDING BCR TABLE • Length – index – 1 • The BCR value can’t be less than 1 • If we have repeated letters we count the minimum BCR value, because it should be the rightmost occurrence of the letter • We use symbol “*” for any other letter that is not in the pattern and the BC value is the length of the pattern, because we can skip the whole pattern knowing that character “*” is not in the pattern.
  • 26. BUILDING BCR TABLE • Length – index – 1 • Length = 7 index 0 1 2 3 4 5 6 7 pattern s c i e n c e * BCR 6 5 4 3 2 1 0>>>1 7 •Length – index – 1 •7-0-1 =6 •The BCR value can’t be less than 1 •Why?
  • 27. BUILDING BCR TABLE • Length – index – 1 • Length = 7 index 0 1 2 3 4 5 6 7 pattern s c i e n c e * BCR 6 5 4 3 2 1 0>>>1 7 •Minimum BCR for repeated letters Letter s c i e n * BCR 6 1 4 1 2 7
  • 28. SECOND RULE: GOOD SUFFIX RULE (GSR)  It used when we have some successful matches  Reusing the already matched string
  • 29. SECOND RULE: GOOD SUFFIX RULE (GSR) 6 shifts
  • 30. BOTH RULES TOGETHER  At each step when we get a mismatch and we want to shift, the algorithm use both rules and use the bigger shift
  • 31. BOTH RULES TOGETHER Letter T C G * BCR 2 3 1 10  BCR = 2 shifts  GSR = 6 shifts
  • 32. PERFORMANCE  The Boyer–Moore is work faster and better with longer pattern with less repeated characters  Most of the time the BCR win over the GSR  many implementation don’t use the GSR at all Algorithm Preprocessing time Matching time Naïve 0 (no preprocessing) Θ((n−m)m) Rabin–Karp Θ(m) average Θ(n + m), worst Θ((n−m)m) Finite-state Θ(mk) Θ(n) Knuth–Morris–Pratt Θ(m) Θ(n) Boyer–Moore Θ(m + k) best Ω(n/m), worst O(n) Bitap Θ(m + k) O(mn)
  • 33. REFRENCES  [1] Robert S. Boyer and J. Strother Moore. 1977. A fast string searching algorithm. Commun. ACM 20, 10 (October 1977), 762-772. DOI=http://dx.doi.org/10.1145/359842.359859  [2] Wikipedia contributors, "Boyer–Moore string search algorithm," Wikipedia, The Free Encyclopedia, https://en.wikipedia.org/w/index.php?title=Boyer%E2%80%93Moore_string_sear ch_algorithm&oldid=688111014 (accessed November 20, 2015).