SlideShare a Scribd company logo
THE ROLE OF BIOINFORMATICS IN
CERVICAL CANCER DIAGNOSIS
UJ/2016/MD/0386
EMMANUEL HWEBUMAAJIDUKU
A SEMINAR SUBMITTED TO THE DEPARTMENT OF MEDICAL
LABORATORY SCIENCE, FACULTY OF HEALTH SCIENCES AND
TECHNOLOGY, COLLEGE OF HEALTH SCIENCES, UNIVERSITY OF JOS,
IN PARTIAL FULFILMENT OF THE REQUIREMENT FOR THE AWARD OF
BACHELOR OF MEDICAL LABORATORY SCIENCE (BMLS) DEGREE
INTRODUCTION
• The cervix represents the lower cylindrical distal portion of the
uterus and is divided into: Ectocervix lined by non-keratinizing,
stratified squamous epithelium and endocervix lined by a simple
columnar epithelium that secretes mucus (Prendiville &
Sankaranarayanan, 2017).
• The squamocolumnar junction (SCJ) is the junction between the
squamous epithelium and the columnar epithelium. Its location on
the cervix is variable (Keerthana, 2020).
• It is well known that the most vulnerable sites to tumorigenesis are
where cell transformation occurs. Both cervix and anus belong to
this category (Keerthana, 2020).
CERVICAL CANCER
• Persistent infections with 14 high-risk
HPV genotypes are responsible for
nearly all occurrences of cervical
squamous cell carcinoma (CSCC) and
adenocarcinoma (Sakamoto et al.,
2018)
• Women infected with HPV develop
precancerous phases with low-grade
squamous intraepithelial
lesions/cervical intraepithelial
neoplasia (CIN) I (LSIL) and high-grade
intraepithelial lesions (HSIL), or CIN
II/CIN III (HSIL), and these high-grade
lesions eventually lead to invasive CC
over a period of time(10-30yrs) (SD et
al., 2021; Tulay & Serakinci, 2016; Wu
et al., 2018).
CERVICAL CANCER
• CC has been controlled in the developed world but ranks 2nd most
frequent malignancy in women in middle- and low-income countries
(MLICs) and the 4th most common kind of cancer in women, with a
high death rate globally (Bray et al., 2018; Small Jr et al., 2017).
• In Nigeria, cervical cancer has a prevalence rate of 19.3%(Chidinma &
Uchenna). According to The Global Cancer Observatory 2018, about
14,943 new cervical cancer cases are diagnosed in Nigeria with
10,403 deaths (Bray et al., 2018). Chidinma & Uchenna reported a
prevalence of CC in Enugu as 13%(Chidinma & Uchenna).
• The diagnosis of CC includes; Screening tests, Biopsy, Biomarker
testing of the tumor(Keerthana, 2020; Chandran et al., 2021)
APPLICATION OF BIOINFORMATICS IN EARLY
DIAGNOSIS OF CERVICAL CANCER
• Specific genes and proteins are expressed for different processes,
the measurement of this information provide early knowledge on
diseases.
• A lot data are generated by molecular techniques, computational
methods are incorporated. In bioinformatics, GEO, TCGA, The
Human Protein Atlas databases and tools including; DAVID, SEER,
GO, GEPIA, UALCAN, (Valand et al., 2022; Liu et al., 2021).
• 12 key differentially expressed genes were discovered from a total
of 57 differentially expressed genes that were involved in
processes such as cell division and epithelial cell differentiation. All
the genes identified had a high level of expression in cervical
cancer tissues compared to normal tissues (Yang et al., 2020). Key
genes discovered are CXCL8, MCM2, TOP2A, TYMS, and HELLS
(Yang et al., 2020).
References
Bray, F., Ferlay, J., Soerjomataram, I., Siegel, R. L., Torre, L. A., & Jemal, A. (2018). Global cancer statistics2018: GLOBOCAN estimates of incidence
and mortality worldwide for 36 cancers in 185 countries. CA: a cancer journal for clinicians, 68(6), 394-424.
Chandran, V., Sumithra, M., Karthick, A., George, T., Deivakani, M., Elakkiya, B., Subramaniam, U., & Manoharan, S. (2021). Diagnosis of cervical
cancer based on ensemble deep learning network using colposcopy images. BioMed Research International, 2021.
Chidinma, A. U., & Uchenna, A. A. Prevalence of Cervical Cancer in Enugu State: A Critical Review of 5-year Hospital Data in Enugu State,
Southeast Nigeria. Prevalence, 10(4).
Keerthana, M. (2020). Visual Inspection of Cervix of Lugol's Iodine and Acetic Acid for Early Detection of Premalignant and Malignant Lesions of
Cervix with Colposcopy and HPE Correlation Tirunelveli Medical College, Tirunelveli].
Liu, J., Liu, S., & Yang, X. (2021). Construction of Gene modules and analysis of prognostic biomarkers for cervical cancer by weighted gene co-
expression network analysis. Frontiers in oncology, 11, 542063.
Prendiville, W., & Sankaranarayanan, R. (2017). Anatomy of the uterine cervix and the transformation zone.
Colposcopy and treatment of cervical precancer, IARC technical publication no452017.
Sakamoto, J., Kamiura, S., Okayama, K., Okodo, M., Shibata, T., Osaka, Y., Fujita, S., Takata, E., Takagi, H., & Takakura, M. (2018). Single type
infection of human papillomavirus as a cause for high-grade cervical intraepithelial neoplasia and invasive cancer in Japan. Papillomavirus
Research, 6, 46-51.
SD, A., Pasumarthi, D., Pasha, A., Doneti, R., Botlagunta, M., & Pawar, S. C. (2021). Identification of differentially expressed genes in cervical
cancer patients by comparative transcriptome analysis. BioMed Research International, 2021.
Shewale, J. B., & Gillison, M. L. (2019). Dynamic factors affecting HPV-attributable fraction for head and neck cancers. Current Opinion in
Virology, 39, 33-40.
Small Jr, W., Bacon, M. A., Bajaj, A., Chuang, L. T., Fisher, B. J., Harkenrider, M. M., Jhingran, A., Kitchener, H. C., Mileshkin, L. R., & Viswanathan,
A. N. (2017). Cervical cancer: a global health crisis. Cancer, 123(13), 2404-2412.
Tulay, P., & Serakinci, N. (2016). The role of human papillomaviruses in cancer progression. Journal of Cancer Metastasis and Treatment, 2, 201-
213.
Valand, J. H., Twine, D., Kyomukamaa, M., Atino, R., Buteme, G. M., Muhahiria, S., Nalwoga, R., Omary, I., Nabwami, A. G., & Otim, E. (2022). Role
of Bioinformatics in Cancer Diagnosis.
Wu, Z., Yu, L., Lei, X., Qin, Y., Zhang, X., Chen, W., & Qiao, Y. (2018). The association between human papillomavirus 16, 18 DNA load and E6
protein expression in cervical intraepithelial neoplasia and cancer. Journal of Clinical Virology, 108, 6-11.
Yang, H. j., Xue, J. m., Li, J., Wan, L. h., & Zhu, Y. x. (2020). Identification of key genes and pathways of diagnosis and prognosis in cervical cancer
by bioinformatics analysis. Molecular Genetics & Genomic Medicine, 8(6), e1200.

More Related Content

Similar to Bioinformatics .pptx

Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...
Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...
Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...
ijtsrd
 
Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...
Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...
Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...
AI Publications
 
VOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docx
VOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docxVOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docx
VOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docx
jessiehampson
 
International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...
International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...
International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...CSCJournals
 
fnano-04-972421.pdf
fnano-04-972421.pdffnano-04-972421.pdf
fnano-04-972421.pdf
EverestTechnomania
 
Knowledge of Cervical Cancer among Women of Reproductive Age in Ibadan North...
Knowledge of Cervical Cancer among Women of Reproductive Age in  Ibadan North...Knowledge of Cervical Cancer among Women of Reproductive Age in  Ibadan North...
Knowledge of Cervical Cancer among Women of Reproductive Age in Ibadan North...
GABRIEL JEREMIAH ORUIKOR
 
Cervical Cancer Risk Factors.pdf
Cervical Cancer Risk Factors.pdfCervical Cancer Risk Factors.pdf
Cervical Cancer Risk Factors.pdf
Yelmi Reni Putri SY
 
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Crimsonpublishers-IGRWH
 
Teza final braicu ovidiu leonard
Teza final  braicu ovidiu leonardTeza final  braicu ovidiu leonard
Teza final braicu ovidiu leonard
PopescuAnca8
 
Senology Newsletter - March 12, 2013
Senology Newsletter - March 12, 2013Senology Newsletter - March 12, 2013
Senology Newsletter - March 12, 2013
Senology.org
 
8. Brest Cancer - hindu female-2014
8. Brest Cancer - hindu female-20148. Brest Cancer - hindu female-2014
8. Brest Cancer - hindu female-2014Pulakes Purkait
 
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Crimsonpublishers-IGRWH
 
Session 3: Amos Deogratius Mwaka
Session 3: Amos Deogratius MwakaSession 3: Amos Deogratius Mwaka
Session 3: Amos Deogratius Mwaka
The Humanitarian Centre
 
Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...
Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...
Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...
CSCJournals
 
cervical cancer (1) ANSHIKA.pptx
cervical cancer (1) ANSHIKA.pptxcervical cancer (1) ANSHIKA.pptx
cervical cancer (1) ANSHIKA.pptx
priyankasingh796838
 
HPV Vaccination Update in 2021 Dr Sharda Jain
HPV Vaccination Update in  2021 Dr Sharda Jain HPV Vaccination Update in  2021 Dr Sharda Jain
HPV Vaccination Update in 2021 Dr Sharda Jain
Lifecare Centre
 
Cervical cancer prevention Dr Sharda Jain
Cervical cancer prevention Dr Sharda Jain Cervical cancer prevention Dr Sharda Jain
Cervical cancer prevention Dr Sharda Jain
Lifecare Centre
 
Evidence Based Guide of Screening for Prevention of Cervical Cancer
Evidence Based Guide of Screening for Prevention of Cervical Cancer  Evidence Based Guide of Screening for Prevention of Cervical Cancer
Evidence Based Guide of Screening for Prevention of Cervical Cancer
Lifecare Centre
 

Similar to Bioinformatics .pptx (18)

Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...
Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...
Knowledge, Attitude and Practice toward Cervical Cancer and Cervical Cancer S...
 
Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...
Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...
Cervical Cancer Care Seeking Behaviour Among Community Women, Jos-North, Plat...
 
VOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docx
VOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docxVOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docx
VOLUME 22, NUMBER 1 CLINICAL JOURNAL OF ONCOLOGY NURSING 69CJO.docx
 
International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...
International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...
International Journal of Biometrics and Bioinformatics(IJBB) Volume (3) Issue...
 
fnano-04-972421.pdf
fnano-04-972421.pdffnano-04-972421.pdf
fnano-04-972421.pdf
 
Knowledge of Cervical Cancer among Women of Reproductive Age in Ibadan North...
Knowledge of Cervical Cancer among Women of Reproductive Age in  Ibadan North...Knowledge of Cervical Cancer among Women of Reproductive Age in  Ibadan North...
Knowledge of Cervical Cancer among Women of Reproductive Age in Ibadan North...
 
Cervical Cancer Risk Factors.pdf
Cervical Cancer Risk Factors.pdfCervical Cancer Risk Factors.pdf
Cervical Cancer Risk Factors.pdf
 
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
 
Teza final braicu ovidiu leonard
Teza final  braicu ovidiu leonardTeza final  braicu ovidiu leonard
Teza final braicu ovidiu leonard
 
Senology Newsletter - March 12, 2013
Senology Newsletter - March 12, 2013Senology Newsletter - March 12, 2013
Senology Newsletter - March 12, 2013
 
8. Brest Cancer - hindu female-2014
8. Brest Cancer - hindu female-20148. Brest Cancer - hindu female-2014
8. Brest Cancer - hindu female-2014
 
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
Cancer Magnitude in Elderly Indian Women, an Experience from Regional Cancer ...
 
Session 3: Amos Deogratius Mwaka
Session 3: Amos Deogratius MwakaSession 3: Amos Deogratius Mwaka
Session 3: Amos Deogratius Mwaka
 
Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...
Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...
Toward Integrated Clinical and Gene Expression Profiles for Breast Cancer Pro...
 
cervical cancer (1) ANSHIKA.pptx
cervical cancer (1) ANSHIKA.pptxcervical cancer (1) ANSHIKA.pptx
cervical cancer (1) ANSHIKA.pptx
 
HPV Vaccination Update in 2021 Dr Sharda Jain
HPV Vaccination Update in  2021 Dr Sharda Jain HPV Vaccination Update in  2021 Dr Sharda Jain
HPV Vaccination Update in 2021 Dr Sharda Jain
 
Cervical cancer prevention Dr Sharda Jain
Cervical cancer prevention Dr Sharda Jain Cervical cancer prevention Dr Sharda Jain
Cervical cancer prevention Dr Sharda Jain
 
Evidence Based Guide of Screening for Prevention of Cervical Cancer
Evidence Based Guide of Screening for Prevention of Cervical Cancer  Evidence Based Guide of Screening for Prevention of Cervical Cancer
Evidence Based Guide of Screening for Prevention of Cervical Cancer
 

Recently uploaded

BOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptx
BOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptxBOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptx
BOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptx
AnushriSrivastav
 
.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD
.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD
.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD
samahesh1
 
Navigating Challenges: Mental Health, Legislation, and the Prison System in B...
Navigating Challenges: Mental Health, Legislation, and the Prison System in B...Navigating Challenges: Mental Health, Legislation, and the Prison System in B...
Navigating Challenges: Mental Health, Legislation, and the Prison System in B...
Guillermo Rivera
 
Empowering ACOs: Leveraging Quality Management Tools for MIPS and Beyond
Empowering ACOs: Leveraging Quality Management Tools for MIPS and BeyondEmpowering ACOs: Leveraging Quality Management Tools for MIPS and Beyond
Empowering ACOs: Leveraging Quality Management Tools for MIPS and Beyond
Health Catalyst
 
Nursing Care of Client With Acute And Chronic Renal Failure.ppt
Nursing Care of Client With Acute And Chronic Renal Failure.pptNursing Care of Client With Acute And Chronic Renal Failure.ppt
Nursing Care of Client With Acute And Chronic Renal Failure.ppt
Rommel Luis III Israel
 
CONSTRUCTION OF TEST IN MANAGEMENT .docx
CONSTRUCTION OF TEST IN MANAGEMENT .docxCONSTRUCTION OF TEST IN MANAGEMENT .docx
CONSTRUCTION OF TEST IN MANAGEMENT .docx
PGIMS Rohtak
 
Roti bank chennai PPT [Autosaved].pptx1
Roti bank  chennai PPT [Autosaved].pptx1Roti bank  chennai PPT [Autosaved].pptx1
Roti bank chennai PPT [Autosaved].pptx1
roti bank
 
HEAT WAVE presented by priya bhojwani..pptx
HEAT WAVE presented by priya bhojwani..pptxHEAT WAVE presented by priya bhojwani..pptx
HEAT WAVE presented by priya bhojwani..pptx
priyabhojwani1200
 
GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...
GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...
GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...
ranishasharma67
 
Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...
Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...
Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...
ranishasharma67
 
Health Education on prevention of hypertension
Health Education on prevention of hypertensionHealth Education on prevention of hypertension
Health Education on prevention of hypertension
Radhika kulvi
 
Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...
Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...
Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...
The Lifesciences Magazine
 
CHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdf
CHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdfCHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdf
CHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdf
Sachin Sharma
 
POLYCYSTIC OVARIAN SYNDROME (PCOS)......
POLYCYSTIC OVARIAN SYNDROME (PCOS)......POLYCYSTIC OVARIAN SYNDROME (PCOS)......
POLYCYSTIC OVARIAN SYNDROME (PCOS)......
Ameena Kadar
 
Introduction to Forensic Pathology course
Introduction to Forensic Pathology courseIntroduction to Forensic Pathology course
Introduction to Forensic Pathology course
fprxsqvnz5
 
Jaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICE
Jaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICEJaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICE
Jaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICE
ranishasharma67
 
一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证
一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证
一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证
o6ov5dqmf
 
How many patients does case series should have In comparison to case reports.pdf
How many patients does case series should have In comparison to case reports.pdfHow many patients does case series should have In comparison to case reports.pdf
How many patients does case series should have In comparison to case reports.pdf
pubrica101
 
ventilator, child on ventilator, newborn
ventilator, child on ventilator, newbornventilator, child on ventilator, newborn
ventilator, child on ventilator, newborn
Pooja Rani
 
Artificial Intelligence to Optimize Cardiovascular Therapy
Artificial Intelligence to Optimize Cardiovascular TherapyArtificial Intelligence to Optimize Cardiovascular Therapy
Artificial Intelligence to Optimize Cardiovascular Therapy
Iris Thiele Isip-Tan
 

Recently uploaded (20)

BOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptx
BOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptxBOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptx
BOWEL ELIMINATION BY ANUSHRI SRIVASTAVA.pptx
 
.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD
.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD
.Metabolic.disordersYYSSSFFSSSSSSSSSSDDD
 
Navigating Challenges: Mental Health, Legislation, and the Prison System in B...
Navigating Challenges: Mental Health, Legislation, and the Prison System in B...Navigating Challenges: Mental Health, Legislation, and the Prison System in B...
Navigating Challenges: Mental Health, Legislation, and the Prison System in B...
 
Empowering ACOs: Leveraging Quality Management Tools for MIPS and Beyond
Empowering ACOs: Leveraging Quality Management Tools for MIPS and BeyondEmpowering ACOs: Leveraging Quality Management Tools for MIPS and Beyond
Empowering ACOs: Leveraging Quality Management Tools for MIPS and Beyond
 
Nursing Care of Client With Acute And Chronic Renal Failure.ppt
Nursing Care of Client With Acute And Chronic Renal Failure.pptNursing Care of Client With Acute And Chronic Renal Failure.ppt
Nursing Care of Client With Acute And Chronic Renal Failure.ppt
 
CONSTRUCTION OF TEST IN MANAGEMENT .docx
CONSTRUCTION OF TEST IN MANAGEMENT .docxCONSTRUCTION OF TEST IN MANAGEMENT .docx
CONSTRUCTION OF TEST IN MANAGEMENT .docx
 
Roti bank chennai PPT [Autosaved].pptx1
Roti bank  chennai PPT [Autosaved].pptx1Roti bank  chennai PPT [Autosaved].pptx1
Roti bank chennai PPT [Autosaved].pptx1
 
HEAT WAVE presented by priya bhojwani..pptx
HEAT WAVE presented by priya bhojwani..pptxHEAT WAVE presented by priya bhojwani..pptx
HEAT WAVE presented by priya bhojwani..pptx
 
GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...
GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...
GURGAON Call Girls ❤8901183002❤ #ℂALL# #gIRLS# In GURGAON ₹,2500 Cash Payment...
 
Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...
Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...
Contact ME {89011**83002} Haridwar ℂall Girls By Full Service Call Girl In Ha...
 
Health Education on prevention of hypertension
Health Education on prevention of hypertensionHealth Education on prevention of hypertension
Health Education on prevention of hypertension
 
Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...
Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...
Deep Leg Vein Thrombosis (DVT): Meaning, Causes, Symptoms, Treatment, and Mor...
 
CHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdf
CHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdfCHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdf
CHAPTER 1 SEMESTER V - ROLE OF PEADIATRIC NURSE.pdf
 
POLYCYSTIC OVARIAN SYNDROME (PCOS)......
POLYCYSTIC OVARIAN SYNDROME (PCOS)......POLYCYSTIC OVARIAN SYNDROME (PCOS)......
POLYCYSTIC OVARIAN SYNDROME (PCOS)......
 
Introduction to Forensic Pathology course
Introduction to Forensic Pathology courseIntroduction to Forensic Pathology course
Introduction to Forensic Pathology course
 
Jaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICE
Jaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICEJaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICE
Jaipur ❤cALL gIRLS 89O1183002 ❤ℂall Girls IN JaiPuR ESCORT SERVICE
 
一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证
一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证
一比一原版纽约大学毕业证(NYU毕业证)成绩单留信认证
 
How many patients does case series should have In comparison to case reports.pdf
How many patients does case series should have In comparison to case reports.pdfHow many patients does case series should have In comparison to case reports.pdf
How many patients does case series should have In comparison to case reports.pdf
 
ventilator, child on ventilator, newborn
ventilator, child on ventilator, newbornventilator, child on ventilator, newborn
ventilator, child on ventilator, newborn
 
Artificial Intelligence to Optimize Cardiovascular Therapy
Artificial Intelligence to Optimize Cardiovascular TherapyArtificial Intelligence to Optimize Cardiovascular Therapy
Artificial Intelligence to Optimize Cardiovascular Therapy
 

Bioinformatics .pptx

  • 1. THE ROLE OF BIOINFORMATICS IN CERVICAL CANCER DIAGNOSIS UJ/2016/MD/0386 EMMANUEL HWEBUMAAJIDUKU A SEMINAR SUBMITTED TO THE DEPARTMENT OF MEDICAL LABORATORY SCIENCE, FACULTY OF HEALTH SCIENCES AND TECHNOLOGY, COLLEGE OF HEALTH SCIENCES, UNIVERSITY OF JOS, IN PARTIAL FULFILMENT OF THE REQUIREMENT FOR THE AWARD OF BACHELOR OF MEDICAL LABORATORY SCIENCE (BMLS) DEGREE
  • 2. INTRODUCTION • The cervix represents the lower cylindrical distal portion of the uterus and is divided into: Ectocervix lined by non-keratinizing, stratified squamous epithelium and endocervix lined by a simple columnar epithelium that secretes mucus (Prendiville & Sankaranarayanan, 2017). • The squamocolumnar junction (SCJ) is the junction between the squamous epithelium and the columnar epithelium. Its location on the cervix is variable (Keerthana, 2020). • It is well known that the most vulnerable sites to tumorigenesis are where cell transformation occurs. Both cervix and anus belong to this category (Keerthana, 2020).
  • 3. CERVICAL CANCER • Persistent infections with 14 high-risk HPV genotypes are responsible for nearly all occurrences of cervical squamous cell carcinoma (CSCC) and adenocarcinoma (Sakamoto et al., 2018) • Women infected with HPV develop precancerous phases with low-grade squamous intraepithelial lesions/cervical intraepithelial neoplasia (CIN) I (LSIL) and high-grade intraepithelial lesions (HSIL), or CIN II/CIN III (HSIL), and these high-grade lesions eventually lead to invasive CC over a period of time(10-30yrs) (SD et al., 2021; Tulay & Serakinci, 2016; Wu et al., 2018).
  • 4. CERVICAL CANCER • CC has been controlled in the developed world but ranks 2nd most frequent malignancy in women in middle- and low-income countries (MLICs) and the 4th most common kind of cancer in women, with a high death rate globally (Bray et al., 2018; Small Jr et al., 2017). • In Nigeria, cervical cancer has a prevalence rate of 19.3%(Chidinma & Uchenna). According to The Global Cancer Observatory 2018, about 14,943 new cervical cancer cases are diagnosed in Nigeria with 10,403 deaths (Bray et al., 2018). Chidinma & Uchenna reported a prevalence of CC in Enugu as 13%(Chidinma & Uchenna). • The diagnosis of CC includes; Screening tests, Biopsy, Biomarker testing of the tumor(Keerthana, 2020; Chandran et al., 2021)
  • 5. APPLICATION OF BIOINFORMATICS IN EARLY DIAGNOSIS OF CERVICAL CANCER • Specific genes and proteins are expressed for different processes, the measurement of this information provide early knowledge on diseases. • A lot data are generated by molecular techniques, computational methods are incorporated. In bioinformatics, GEO, TCGA, The Human Protein Atlas databases and tools including; DAVID, SEER, GO, GEPIA, UALCAN, (Valand et al., 2022; Liu et al., 2021). • 12 key differentially expressed genes were discovered from a total of 57 differentially expressed genes that were involved in processes such as cell division and epithelial cell differentiation. All the genes identified had a high level of expression in cervical cancer tissues compared to normal tissues (Yang et al., 2020). Key genes discovered are CXCL8, MCM2, TOP2A, TYMS, and HELLS (Yang et al., 2020).
  • 6. References Bray, F., Ferlay, J., Soerjomataram, I., Siegel, R. L., Torre, L. A., & Jemal, A. (2018). Global cancer statistics2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: a cancer journal for clinicians, 68(6), 394-424. Chandran, V., Sumithra, M., Karthick, A., George, T., Deivakani, M., Elakkiya, B., Subramaniam, U., & Manoharan, S. (2021). Diagnosis of cervical cancer based on ensemble deep learning network using colposcopy images. BioMed Research International, 2021. Chidinma, A. U., & Uchenna, A. A. Prevalence of Cervical Cancer in Enugu State: A Critical Review of 5-year Hospital Data in Enugu State, Southeast Nigeria. Prevalence, 10(4). Keerthana, M. (2020). Visual Inspection of Cervix of Lugol's Iodine and Acetic Acid for Early Detection of Premalignant and Malignant Lesions of Cervix with Colposcopy and HPE Correlation Tirunelveli Medical College, Tirunelveli]. Liu, J., Liu, S., & Yang, X. (2021). Construction of Gene modules and analysis of prognostic biomarkers for cervical cancer by weighted gene co- expression network analysis. Frontiers in oncology, 11, 542063. Prendiville, W., & Sankaranarayanan, R. (2017). Anatomy of the uterine cervix and the transformation zone. Colposcopy and treatment of cervical precancer, IARC technical publication no452017. Sakamoto, J., Kamiura, S., Okayama, K., Okodo, M., Shibata, T., Osaka, Y., Fujita, S., Takata, E., Takagi, H., & Takakura, M. (2018). Single type infection of human papillomavirus as a cause for high-grade cervical intraepithelial neoplasia and invasive cancer in Japan. Papillomavirus Research, 6, 46-51. SD, A., Pasumarthi, D., Pasha, A., Doneti, R., Botlagunta, M., & Pawar, S. C. (2021). Identification of differentially expressed genes in cervical cancer patients by comparative transcriptome analysis. BioMed Research International, 2021. Shewale, J. B., & Gillison, M. L. (2019). Dynamic factors affecting HPV-attributable fraction for head and neck cancers. Current Opinion in Virology, 39, 33-40. Small Jr, W., Bacon, M. A., Bajaj, A., Chuang, L. T., Fisher, B. J., Harkenrider, M. M., Jhingran, A., Kitchener, H. C., Mileshkin, L. R., & Viswanathan, A. N. (2017). Cervical cancer: a global health crisis. Cancer, 123(13), 2404-2412. Tulay, P., & Serakinci, N. (2016). The role of human papillomaviruses in cancer progression. Journal of Cancer Metastasis and Treatment, 2, 201- 213. Valand, J. H., Twine, D., Kyomukamaa, M., Atino, R., Buteme, G. M., Muhahiria, S., Nalwoga, R., Omary, I., Nabwami, A. G., & Otim, E. (2022). Role of Bioinformatics in Cancer Diagnosis. Wu, Z., Yu, L., Lei, X., Qin, Y., Zhang, X., Chen, W., & Qiao, Y. (2018). The association between human papillomavirus 16, 18 DNA load and E6 protein expression in cervical intraepithelial neoplasia and cancer. Journal of Clinical Virology, 108, 6-11. Yang, H. j., Xue, J. m., Li, J., Wan, L. h., & Zhu, Y. x. (2020). Identification of key genes and pathways of diagnosis and prognosis in cervical cancer by bioinformatics analysis. Molecular Genetics & Genomic Medicine, 8(6), e1200.