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NEW AND INNOVATIVE MEASURING METHOD COMBINING FTIR-ATR SPECTROSCOPY AND
 STABLE ISOTOPES TO INVESTIGATE THE KINETICS OF NITROGEN TRANSFORMATIONS IN SOILS

                                                                                                                                      Oz Kira, Avi Shaviv and Raphael Linker
                                                                                                                    Faculty of Civil and Environmental Engineering, Technion, Haifa, Israel


                    1             Introduction                                                                                                           2          Gross reaction rates
                                                                                                                                                                                      Immobilization
                                                                                                                                                                                                                                                                      3           Measuring method : FTIR-ATR
Investigation of nitrogen (N) transformations in                                                                                                                                                                                                               The technique commonly used for measuring the various N-species and their
                                                                                                                                                         Mineralization               NH3 volatilization
the soil is required to improve the quantification                                                                                                                               NH4 Plant uptake
                                                                                                                                                                                    +                                                                          isotopic forms, isotope ratio mass spectrometer – IRMS, is expensive and the
and understanding of the mechanisms through                                                                                                                                                                   Denitrification                                  sample preparation is both tedious and destructive and thus does not allow
                                                                                                                                                                                   Nitrification              Leaching
which polluting N-species are discharged to the                                                                                                                                                    NO3-       Immobilization                                   online and continuous measurements. Using FTIR-ATR (Fourier Transform
environment. Methods using stable N-isotopes                                                                                                                                                                  Plant uptake                                     Infra Red- Attenuated Total Reflectance) device, as an alternative for the
were developed in order to estimate gross                                                                                                                 Fig 2: “Sink and Source” reaction regarding the ammonium and nitrate                                 IRMS, allows measuring isotopic N-species concentrations directly in soil
                                                                                                                                                                       pool in the soil (master 2003 with alterations).
mineralization and nitrification rates.                                                                                                              Determining the reaction rates of the different N                                                         pastes.

                                                                                                         NH3
                                                                                                                                                     transformations, which occurs concomitantly,
                            Organic matter crop
                         residues & native soil OM
                                                                                 Fertilizer                                                          provides deeper insight on their mechanisms. Since
                                                                                                   Volatilization




                                                                                                                                                     N-species like nitrate or ammonium are involved in
                                                                                                                                                     several "source-sink" reactions, monitoring the
 N2                               Immobilization
                        Biomass                       NH4+
                                                                                                                                                     concentration change of each one of them allows
                                                                                                                                                     the calculation of "net" rate only. “Real rate" of a
                                                                                                                                                     specific reaction is commonly denoted as "gross
                                                                                                   Fixation
                                                             Nitrification




                                                      NO2-                                                                                           rate". For example:                                                                                            Fig 3: An ATR crystal (Perkin-Elmer).
                                                                                                                                                      “Gross mineralization rate” accounts for the
                                                                                                Clay minerals
                                                                                                                                                     change in ammonium (formation) pool size caused                                                                                                                                       Fig 4: Band shift of both 15NO3- and 15NH4+ signals from 14NO3- and
                                                                                                                                                                                                                                                                                                                                                   14NH + (respectively) as viewed using the FTIR-ATR.
         N2O                                          NO3-                                                                                           purely by mineralization as if all other consuming                                                                                                                                                 4


                                                                                                                                                     processes were not present.                                                                               Both nitrate and ammonium have a band shift between the labeled and
                                                     Leaching
                                                                                                                                                      “Net mineralization rate" accounts for all the                                                          unlabeled species, allowing to differentiate between their signals with the
                                                                                                                                                     changes (consumption and formation) caused by                                                             use of chemometric tools such as partial least squares (PLS) and neural
                           Fig 1: N transformations in the soil (Stevens).
                                                                                                                                                     immobilization, nitrification, and plant uptake.                                                          network (NN).



                                                                                                                                                                    4 ”Isotope Dilution Technique”
"Isotopic dilution technique" is an incubation method based on tracking after the dilution of an isotopic reservoir after enriching the soil with known concentrations of the investigated N-
species. Using rate equations of the change of 15NO3- and 15NH4+ the gross mineralization and nitrification rates can be calculated. The relative abundance as a function of time of ammonium
and nitrate is extracted from the incubation experiments (Figs 9,11).

                         Min.                        Min.                               Min.                                                                                                            Nt15- 15NO3- concentration during the incubation.      Ammonium (15N) change rate-
                                                                                                                                                                                                        At15- 15NH4+ concentration during the incubation.                                      dAt15
                                          14NH +                                                                                                           14NH +     25         %A014=25%              %Nt 15- 15NO - relative abundance during the incubation.                                       A  m   % At15
                                              4                                                                                                                4                                                     3                                                                          dt
                                                                             14NH +
                                                                                                                                                                                                        %At15- 15NH4+ relative abundance during the incubation.
                    Ammonium                                                     4
                                                                                                                                                                                                        n-nitrification gross rate.                            Nitrate (15N) change rate-
                         pool             15NH +
                                              4
                                                                                                         14NH +
                                                                                                             4
                                                                                                                                                           15NH +
                                                                                                                                                               4
                                                                                                                                                                      75         %A015=75%              θN-nitrate pool change rate.
                                                                                                                                                                                                                                                                                   dN t15
                                                                                                                                                                                                                                                                                           n  % At15   N  n   % N t15
                                                                             15NH +
                                                                                 4
                                                                                                         15NH +
                                                                                                                                                                                                        m-mineralization gross rate.
                                                                                                             4                                                                                                                                                                       dt
                                                                                                                                                                                                        θA-ammonium pool change rate.
                                                                             Time
                                          Fig 5: Illustration of “Isotope dilution technique” (master 2003 with alterations).




                                                                                                                                                                                 5           Results: calibration
The measuring method is based on a comprehensive procedure of calibration which                                                                                                                              Type of N                           RMSE (mgN/kgsoil)
included several stages:                                                                                                                                                                                      specie                         Validation        Calibration
 Measurements of N-species individually in water solutions.                                                                                                                                                  14NH +
                                                                                                                                                                                                                  4                              5.03             4.19
 Measurements of mixtures of N-species in KCl 1N.                                                                                                                                                            15NH +                             8.22             6.51
                                                                                                                                                                                                                  4
 Measurements of mixtures of N-species in soil pastes.                                                                                                                                                       14NO -                             7.93             6.82
                                                                                                                                                                                                                  3
The use of KCl was required in order to release the ammonium from its adsorption to                                                                                                                           15NO -
                                                                                                                                                                                                                  3                              8.18             6.64
the clay minerals. Adsorbed ammonium cannot be detected by the FTIR-ATR system.
                                                                                                                                                                                                             Table 1: Calibration results of mixture of N-species
                                                                                                                                                                                                                                 in soil pastes

                                                                                                                                                                                                                                                                                   Fig 6: Calibration results of 15NO3- in soil pastes                        Fig 7: Calibration results of 15NH4+ in soil pastes




                                                                                                                                                                      6              Results: soil incubations
The soil incubations were intended to examine the validity of the calibrations. In this section all of the N-species concentration predictions were obtained using the calibration set created
from mixtures of N-species in the soil pastes. The incubations were performed using Terra Rosa soil ( Rhodoxeralfs, U.S.D.A classification).
                                                                        Addition of 15NH4+ and 14NH4+                                                                                                                                                                             Addition of 15NO3- and 14NH4+
           140                                                                                                                            0.70                                                                                         120                                                                                              1.00
                                                                                                                                                                                                                                                                                                    14NO -
                                                                                                                                                                                                                                                                                                        3
                                                                                              15NO -
           120                                                                                    3                                       0.60                                                     %15NO3-                             100                                                          15NO -                              0.90
                                                                                                                                                                                                                                                                                                        3
                                                                                                                     Relative abundance




           100
                                                                                                                                                                                                                                                                                                                   Relative abundance




                                                                                                                                          0.50
                                                                                                                                                                                                                                        80                                                                                              0.80
                                                                                                                                                                                                                          mgN/kgsoil
  mgN/kgsoil




                                                                                              14NO -
               80                                                                                 3                                       0.40
                                                                                                                                                                                                                                        60                                                                                              0.70
               60                                                                                                                         0.30
                                                                                                                                                                                                                                        40
               40                                                                                                                                                                                                                                                                                                                       0.60
                                                                                                                                          0.20                                                     %15NH4+
                                                                                              14NH +                                                                                                                                    20                                                          14NH +
               20                                                                                 4                                       0.10                                                                                                                                                          4                               0.50
                                                                                              15NH +
                                                                                                  4                                                                                                                                     0                                                                                                                                                           %15NO3-
               0                                                                                                                          0.00
                                                                                                                                                                                                                                             0            50             100             150                                            0.40
                    0                50                100                        150                                                            0            50             100             150                                                                                                                                               0            50             100             150
                                               Time (hr)                                                                                                             Time (hr)                                                                                    Time (hr)
                                                                                                                                                                                                                                                                                                                                                                    Time(hr)
 Fig 8: N species concentration during incubation with added 15NH4+. Fig 9: Relative abundance change during incubation with added 15NH4+.                                                                              Fig 10: N species concentration during incubation with added 15NO3-.                   Fig 11: Relative abundance change during incubation with added 15NO3-.


                                           Reaction                              Gross rate                                                               Net rate                                                                                              Reaction                 Gross rate                                                   Net rate
                                                                               (mgN.kgsoil-1.day-1)                                                   (mgN.kgsoil-1.day-1)                                                                                                             (mgN.kgsoil-1.day-1)                                        (mgN.kgsoil-1.day-1)

                                     mineralization                                     5.6                                                                  4.1                                                                                          mineralization                        -                                                         5.4

                                       nitrification                                    35.7                                                     24.8*                  28.5**                                                                                 nitrification                   16.7                                        11.3*                     17.6**
                                   Table 2: Gross and net mineralization and nitrification rates during incubation with added 15NH4+.                                                                                                                      Table 3: Gross and net mineralization and nitrification rates during incubation with added 15NO3-.
                                             *calculated by ammonium mass balance.**calculated by nitrate mass balance.                                                                                                                                             *calculated by ammonium mass balance.**calculated by nitrate mass balance.




                                                                                               7                                    Conclusions                                                                                                                                                  Supported by:
The FTIR-ATR system show a great potential in researching N-transformations in the soil. The ability to
                                                                                                                                                                                                                                                                              .
measure samples of saturated soil pastes in almost real time and with no interference to the sample is
a great advantage which enables a more efficient research. The development of this method indicates
a possibility of executing direct soil incubation on the ATR crystal which will result in a real time
measurement of N-species concentrations during the incubation.

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  • 1. NEW AND INNOVATIVE MEASURING METHOD COMBINING FTIR-ATR SPECTROSCOPY AND STABLE ISOTOPES TO INVESTIGATE THE KINETICS OF NITROGEN TRANSFORMATIONS IN SOILS Oz Kira, Avi Shaviv and Raphael Linker Faculty of Civil and Environmental Engineering, Technion, Haifa, Israel 1 Introduction 2 Gross reaction rates Immobilization 3 Measuring method : FTIR-ATR Investigation of nitrogen (N) transformations in The technique commonly used for measuring the various N-species and their Mineralization NH3 volatilization the soil is required to improve the quantification NH4 Plant uptake + isotopic forms, isotope ratio mass spectrometer – IRMS, is expensive and the and understanding of the mechanisms through Denitrification sample preparation is both tedious and destructive and thus does not allow Nitrification Leaching which polluting N-species are discharged to the NO3- Immobilization online and continuous measurements. Using FTIR-ATR (Fourier Transform environment. Methods using stable N-isotopes Plant uptake Infra Red- Attenuated Total Reflectance) device, as an alternative for the were developed in order to estimate gross Fig 2: “Sink and Source” reaction regarding the ammonium and nitrate IRMS, allows measuring isotopic N-species concentrations directly in soil pool in the soil (master 2003 with alterations). mineralization and nitrification rates. Determining the reaction rates of the different N pastes. NH3 transformations, which occurs concomitantly, Organic matter crop residues & native soil OM Fertilizer provides deeper insight on their mechanisms. Since Volatilization N-species like nitrate or ammonium are involved in several "source-sink" reactions, monitoring the N2 Immobilization Biomass NH4+ concentration change of each one of them allows the calculation of "net" rate only. “Real rate" of a specific reaction is commonly denoted as "gross Fixation Nitrification NO2- rate". For example: Fig 3: An ATR crystal (Perkin-Elmer).  “Gross mineralization rate” accounts for the Clay minerals change in ammonium (formation) pool size caused Fig 4: Band shift of both 15NO3- and 15NH4+ signals from 14NO3- and 14NH + (respectively) as viewed using the FTIR-ATR. N2O NO3- purely by mineralization as if all other consuming 4 processes were not present. Both nitrate and ammonium have a band shift between the labeled and Leaching  “Net mineralization rate" accounts for all the unlabeled species, allowing to differentiate between their signals with the changes (consumption and formation) caused by use of chemometric tools such as partial least squares (PLS) and neural Fig 1: N transformations in the soil (Stevens). immobilization, nitrification, and plant uptake. network (NN). 4 ”Isotope Dilution Technique” "Isotopic dilution technique" is an incubation method based on tracking after the dilution of an isotopic reservoir after enriching the soil with known concentrations of the investigated N- species. Using rate equations of the change of 15NO3- and 15NH4+ the gross mineralization and nitrification rates can be calculated. The relative abundance as a function of time of ammonium and nitrate is extracted from the incubation experiments (Figs 9,11). Min. Min. Min. Nt15- 15NO3- concentration during the incubation. Ammonium (15N) change rate- At15- 15NH4+ concentration during the incubation. dAt15 14NH + 14NH + 25 %A014=25% %Nt 15- 15NO - relative abundance during the incubation.   A  m   % At15 4 4 3 dt 14NH + %At15- 15NH4+ relative abundance during the incubation. Ammonium 4 n-nitrification gross rate. Nitrate (15N) change rate- pool 15NH + 4 14NH + 4 15NH + 4 75 %A015=75% θN-nitrate pool change rate. dN t15  n  % At15   N  n   % N t15 15NH + 4 15NH + m-mineralization gross rate. 4 dt θA-ammonium pool change rate. Time Fig 5: Illustration of “Isotope dilution technique” (master 2003 with alterations). 5 Results: calibration The measuring method is based on a comprehensive procedure of calibration which Type of N RMSE (mgN/kgsoil) included several stages: specie Validation Calibration  Measurements of N-species individually in water solutions. 14NH + 4 5.03 4.19  Measurements of mixtures of N-species in KCl 1N. 15NH + 8.22 6.51 4  Measurements of mixtures of N-species in soil pastes. 14NO - 7.93 6.82 3 The use of KCl was required in order to release the ammonium from its adsorption to 15NO - 3 8.18 6.64 the clay minerals. Adsorbed ammonium cannot be detected by the FTIR-ATR system. Table 1: Calibration results of mixture of N-species in soil pastes Fig 6: Calibration results of 15NO3- in soil pastes Fig 7: Calibration results of 15NH4+ in soil pastes 6 Results: soil incubations The soil incubations were intended to examine the validity of the calibrations. In this section all of the N-species concentration predictions were obtained using the calibration set created from mixtures of N-species in the soil pastes. The incubations were performed using Terra Rosa soil ( Rhodoxeralfs, U.S.D.A classification). Addition of 15NH4+ and 14NH4+ Addition of 15NO3- and 14NH4+ 140 0.70 120 1.00 14NO - 3 15NO - 120 3 0.60 %15NO3- 100 15NO - 0.90 3 Relative abundance 100 Relative abundance 0.50 80 0.80 mgN/kgsoil mgN/kgsoil 14NO - 80 3 0.40 60 0.70 60 0.30 40 40 0.60 0.20 %15NH4+ 14NH + 20 14NH + 20 4 0.10 4 0.50 15NH + 4 0 %15NO3- 0 0.00 0 50 100 150 0.40 0 50 100 150 0 50 100 150 0 50 100 150 Time (hr) Time (hr) Time (hr) Time(hr) Fig 8: N species concentration during incubation with added 15NH4+. Fig 9: Relative abundance change during incubation with added 15NH4+. Fig 10: N species concentration during incubation with added 15NO3-. Fig 11: Relative abundance change during incubation with added 15NO3-. Reaction Gross rate Net rate Reaction Gross rate Net rate (mgN.kgsoil-1.day-1) (mgN.kgsoil-1.day-1) (mgN.kgsoil-1.day-1) (mgN.kgsoil-1.day-1) mineralization 5.6 4.1 mineralization - 5.4 nitrification 35.7 24.8* 28.5** nitrification 16.7 11.3* 17.6** Table 2: Gross and net mineralization and nitrification rates during incubation with added 15NH4+. Table 3: Gross and net mineralization and nitrification rates during incubation with added 15NO3-. *calculated by ammonium mass balance.**calculated by nitrate mass balance. *calculated by ammonium mass balance.**calculated by nitrate mass balance. 7 Conclusions Supported by: The FTIR-ATR system show a great potential in researching N-transformations in the soil. The ability to . measure samples of saturated soil pastes in almost real time and with no interference to the sample is a great advantage which enables a more efficient research. The development of this method indicates a possibility of executing direct soil incubation on the ATR crystal which will result in a real time measurement of N-species concentrations during the incubation.