SlideShare a Scribd company logo

Network biology: A crash course on STRING and Cytoscape

•Download as PPT, PDF•
•
Lars Juhl Jensen
Lars Juhl Jensen

Network biology: A crash course on STRING and Cytoscape

Science
1 of 51
Network biology A crash course on STRING and Cytoscape Lars Juhl Jensen
STRING
functional associations
9.6 million genes
string-db.org
pathways
protein complexes
interaction screens
gene coexpression
genomic context
many databases
different formats
different identifiers
variable quality
not comparable
hard work
(Ph.D. students)
quality scores
affinity purification
von Mering et al., Nucleic Acids Research, 2005
score calibration
von Mering et al., Nucleic Acids Research, 2005
implicit weighting by quality
common scale
missing most of the data
>10 km
too much to read
text mining
comprehensive lexicon
cyclin dependent kinase 1
CDC2
spaces and hyphens
cyclin dependent kinase 1
cyclin-dependent kinase 1
prefixes and suffixes
CDC2
hCdc2
“black list”
SDS
co-mentioning
Cytoscape
visualization
analysis
large networks
not a database
STRING App
Acknowledgments Damian Szklarczyk John "Scooter" Morris Helen Cook Michael Kuhn Stefan Wyder Milan Simonovic Alberto Santos Nadezhda Doncheva Alexander Roth Peer Bork Christian von Mering

Recommended

Gene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textGene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textLars Juhl Jensen
 
The STRING database and related tools
The STRING database and related toolsThe STRING database and related tools
The STRING database and related toolsLars Juhl Jensen
 
STRING/STITCH tutorial
STRING/STITCH tutorialSTRING/STITCH tutorial
STRING/STITCH tutorialbiocs
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
The STRING database
The STRING databaseThe STRING database
The STRING databaseLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
STRING: Large-scale data and text mining
STRING: Large-scale data and text miningSTRING: Large-scale data and text mining
STRING: Large-scale data and text miningLars Juhl Jensen
 
STRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningSTRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningLars Juhl Jensen
 

Recommended

Gene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textGene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textLars Juhl Jensen
 
The STRING database and related tools
The STRING database and related toolsThe STRING database and related tools
The STRING database and related toolsLars Juhl Jensen
 
STRING/STITCH tutorial
STRING/STITCH tutorialSTRING/STITCH tutorial
STRING/STITCH tutorialbiocs
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
The STRING database
The STRING databaseThe STRING database
The STRING databaseLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
STRING: Large-scale data and text mining
STRING: Large-scale data and text miningSTRING: Large-scale data and text mining
STRING: Large-scale data and text miningLars Juhl Jensen
 
STRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningSTRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningLars Juhl Jensen
 
The STRING database
The STRING databaseThe STRING database
The STRING databaseLars Juhl Jensen
 
Protein association networks with STRING
Protein association networks with STRINGProtein association networks with STRING
Protein association networks with STRINGLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text miningLars Juhl Jensen
 
Cellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataCellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataLars Juhl Jensen
 
Introduction to STRING
Introduction to STRINGIntroduction to STRING
Introduction to STRINGLars Juhl Jensen
 
The STRING database - Quality scores for heterogeneous interaction data
The STRING database - Quality scores for heterogeneous interaction dataThe STRING database - Quality scores for heterogeneous interaction data
The STRING database - Quality scores for heterogeneous interaction dataLars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseasesLars Juhl Jensen
 
The pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataThe pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataLars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
The pragmatic text miner - It's just another type of poorly standardized data
The pragmatic text miner - It's just another type of poorly standardized dataThe pragmatic text miner - It's just another type of poorly standardized data
The pragmatic text miner - It's just another type of poorly standardized dataLars Juhl Jensen
 
The pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataThe pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataLars Juhl Jensen
 
Systems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemSystems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemLars Juhl Jensen
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous dataLars Juhl Jensen
 
Turning big data and text collections into web resrouces
Turning big data and text collections into web resroucesTurning big data and text collections into web resrouces
Turning big data and text collections into web resroucesLars Juhl Jensen
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Data integration with STRING
Data integration with STRINGData integration with STRING
Data integration with STRINGLars Juhl Jensen
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningLars Juhl Jensen
 

More Related Content

What's hot

Protein association networks with STRING
Protein association networks with STRINGProtein association networks with STRING
Protein association networks with STRINGLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text miningLars Juhl Jensen
 
Cellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataCellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataLars Juhl Jensen
 
The STRING database - Quality scores for heterogeneous interaction data
The STRING database - Quality scores for heterogeneous interaction dataThe STRING database - Quality scores for heterogeneous interaction data
The STRING database - Quality scores for heterogeneous interaction dataLars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseasesLars Juhl Jensen
 
The pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataThe pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataLars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
The pragmatic text miner - It's just another type of poorly standardized data
The pragmatic text miner - It's just another type of poorly standardized dataThe pragmatic text miner - It's just another type of poorly standardized data
The pragmatic text miner - It's just another type of poorly standardized dataLars Juhl Jensen
 
The pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataThe pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataLars Juhl Jensen
 
Systems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemSystems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemLars Juhl Jensen
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous dataLars Juhl Jensen
 
Turning big data and text collections into web resrouces
Turning big data and text collections into web resroucesTurning big data and text collections into web resrouces
Turning big data and text collections into web resroucesLars Juhl Jensen
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 

What's hot (20)

The STRING database
The STRING databaseThe STRING database
The STRING database
 
Protein association networks with STRING
Protein association networks with STRINGProtein association networks with STRING
Protein association networks with STRING
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritization
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
Cellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataCellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous data
 
Introduction to STRING
Introduction to STRINGIntroduction to STRING
Introduction to STRING
 
The STRING database - Quality scores for heterogeneous interaction data
The STRING database - Quality scores for heterogeneous interaction dataThe STRING database - Quality scores for heterogeneous interaction data
The STRING database - Quality scores for heterogeneous interaction data
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
 
The pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataThe pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized data
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
 
The pragmatic text miner - It's just another type of poorly standardized data
The pragmatic text miner - It's just another type of poorly standardized dataThe pragmatic text miner - It's just another type of poorly standardized data
The pragmatic text miner - It's just another type of poorly standardized data
 
The pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized dataThe pragmatic text miner: It’s just another type of poorly standardized data
The pragmatic text miner: It’s just another type of poorly standardized data
 
Systems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemSystems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological system
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous data
 
Turning big data and text collections into web resrouces
Turning big data and text collections into web resroucesTurning big data and text collections into web resrouces
Turning big data and text collections into web resrouces
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and text
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 

Similar to Network biology: A crash course on STRING and Cytoscape

Data integration with STRING
Data integration with STRINGData integration with STRING
Data integration with STRINGLars Juhl Jensen
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningLars Juhl Jensen
 
Protein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textProtein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeLars Juhl Jensen
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
In silico and Text-Based Analysis of Cellular Networks
In silico and Text-Based Analysis of Cellular NetworksIn silico and Text-Based Analysis of Cellular Networks
In silico and Text-Based Analysis of Cellular NetworksLars Juhl Jensen
 
Advanced bioinformatics of proteomics datasets
Advanced bioinformatics of proteomics datasetsAdvanced bioinformatics of proteomics datasets
Advanced bioinformatics of proteomics datasetsLars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseasesLars Juhl Jensen
 
Making gene networks through data integration
Making gene networks through data integrationMaking gene networks through data integration
Making gene networks through data integrationLars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
Systems biology - Bioinformatics on complete biological systems
Systems biology - Bioinformatics on complete biological systemsSystems biology - Bioinformatics on complete biological systems
Systems biology - Bioinformatics on complete biological systemsLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text miningLars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text miningLars Juhl Jensen
 
STRING: Protein association networks
STRING: Protein association networksSTRING: Protein association networks
STRING: Protein association networksLars Juhl Jensen
 
STRING: protein association networks
STRING: protein association networksSTRING: protein association networks
STRING: protein association networksLars Juhl Jensen
 

Similar to Network biology: A crash course on STRING and Cytoscape (20)

Data integration with STRING
Data integration with STRINGData integration with STRING
Data integration with STRING
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text mining
 
Protein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textProtein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and text
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous data
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
In silico and Text-Based Analysis of Cellular Networks
In silico and Text-Based Analysis of Cellular NetworksIn silico and Text-Based Analysis of Cellular Networks
In silico and Text-Based Analysis of Cellular Networks
 
Advanced bioinformatics of proteomics datasets
Advanced bioinformatics of proteomics datasetsAdvanced bioinformatics of proteomics datasets
Advanced bioinformatics of proteomics datasets
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
 
Making gene networks through data integration
Making gene networks through data integrationMaking gene networks through data integration
Making gene networks through data integration
 
LarsJuhlJensen2020
LarsJuhlJensen2020LarsJuhlJensen2020
LarsJuhlJensen2020
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
Systems biology - Bioinformatics on complete biological systems
Systems biology - Bioinformatics on complete biological systemsSystems biology - Bioinformatics on complete biological systems
Systems biology - Bioinformatics on complete biological systems
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text mining
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
STRING: Protein association networks
STRING: Protein association networksSTRING: Protein association networks
STRING: Protein association networks
 
STRING: protein association networks
STRING: protein association networksSTRING: protein association networks
STRING: protein association networks
 

More from Lars Juhl Jensen

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...Lars Juhl Jensen
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineLars Juhl Jensen
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationLars Juhl Jensen
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeLars Juhl Jensen
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataLars Juhl Jensen
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textLars Juhl Jensen
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Lars Juhl Jensen
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Lars Juhl Jensen
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionLars Juhl Jensen
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textLars Juhl Jensen
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textLars Juhl Jensen
 
The Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literatureThe Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literatureLars Juhl Jensen
 
Text-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networksText-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networksLars Juhl Jensen
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 

More from Lars Juhl Jensen (20)

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicine
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotation
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using Cytoscape
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous data
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured text
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...
 
Cellular networks
Cellular networksCellular networks
Cellular networks
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and text
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognition
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network Biology
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
The Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literatureThe Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literature
 
Text-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networksText-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networks
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 

Recently uploaded

Boyles law module in the grade 10 science
Boyles law module in the grade 10 scienceBoyles law module in the grade 10 science
Boyles law module in the grade 10 sciencefloriejanemacaya1
 
Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...Nistarini College, Purulia (W.B) India
 
All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...
All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...
All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...Sérgio Sacani
 
Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?Patrick Diehl
 
Analytical Profile of Coleus Forskohlii | Forskolin .pdf
Analytical Profile of Coleus Forskohlii | Forskolin .pdfAnalytical Profile of Coleus Forskohlii | Forskolin .pdf
Analytical Profile of Coleus Forskohlii | Forskolin .pdfSwapnil Therkar
 
Physiochemical properties of nanomaterials and its nanotoxicity.pptx
Physiochemical properties of nanomaterials and its nanotoxicity.pptxPhysiochemical properties of nanomaterials and its nanotoxicity.pptx
Physiochemical properties of nanomaterials and its nanotoxicity.pptxAArockiyaNisha
 
PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...
PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...
PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...Sérgio Sacani
 
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝soniya singh
 
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.aasikanpl
 
Hubble Asteroid Hunter III. Physical properties of newly found asteroids
Hubble Asteroid Hunter III. Physical properties of newly found asteroidsHubble Asteroid Hunter III. Physical properties of newly found asteroids
Hubble Asteroid Hunter III. Physical properties of newly found asteroidsSérgio Sacani
 
GFP in rDNA Technology (Biotechnology).pptx
GFP in rDNA Technology (Biotechnology).pptxGFP in rDNA Technology (Biotechnology).pptx
GFP in rDNA Technology (Biotechnology).pptxAleenaTreesaSaji
 
A relative description on Sonoporation.pdf
A relative description on Sonoporation.pdfA relative description on Sonoporation.pdf
A relative description on Sonoporation.pdfnehabiju2046
 
Neurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 trNeurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 trssuser06f238
 
Natural Polymer Based Nanomaterials
Natural Polymer Based NanomaterialsNatural Polymer Based Nanomaterials
Natural Polymer Based NanomaterialsAArockiyaNisha
 
Biopesticide (2).pptx .This slides helps to know the different types of biop...
Biopesticide (2).pptx .This slides helps to know the different types of biop...Biopesticide (2).pptx .This slides helps to know the different types of biop...
Biopesticide (2).pptx .This slides helps to know the different types of biop...RohitNehra6
 
Animal Communication- Auditory and Visual.pptx
Animal Communication- Auditory and Visual.pptxAnimal Communication- Auditory and Visual.pptx
Animal Communication- Auditory and Visual.pptxUmerFayaz5
 
Module 4: Mendelian Genetics and Punnett Square
Module 4: Mendelian Genetics and Punnett SquareModule 4: Mendelian Genetics and Punnett Square
Module 4: Mendelian Genetics and Punnett SquareIsiahStephanRadaza
 
Artificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C PArtificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C PPRINCE C P
 
Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)DHURKADEVIBASKAR
 

Recently uploaded (20)

Boyles law module in the grade 10 science
Boyles law module in the grade 10 scienceBoyles law module in the grade 10 science
Boyles law module in the grade 10 science
 
Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...
 
All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...
All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...
All-domain Anomaly Resolution Office U.S. Department of Defense (U) Case: “Eg...
 
Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?
 
Analytical Profile of Coleus Forskohlii | Forskolin .pdf
Analytical Profile of Coleus Forskohlii | Forskolin .pdfAnalytical Profile of Coleus Forskohlii | Forskolin .pdf
Analytical Profile of Coleus Forskohlii | Forskolin .pdf
 
Physiochemical properties of nanomaterials and its nanotoxicity.pptx
Physiochemical properties of nanomaterials and its nanotoxicity.pptxPhysiochemical properties of nanomaterials and its nanotoxicity.pptx
Physiochemical properties of nanomaterials and its nanotoxicity.pptx
 
PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...
PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...
PossibleEoarcheanRecordsoftheGeomagneticFieldPreservedintheIsuaSupracrustalBe...
 
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
 
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
 
9953056974 Young Call Girls In Mahavir enclave Indian Quality Escort service
9953056974 Young Call Girls In Mahavir enclave Indian Quality Escort service9953056974 Young Call Girls In Mahavir enclave Indian Quality Escort service
9953056974 Young Call Girls In Mahavir enclave Indian Quality Escort service
 
Hubble Asteroid Hunter III. Physical properties of newly found asteroids
Hubble Asteroid Hunter III. Physical properties of newly found asteroidsHubble Asteroid Hunter III. Physical properties of newly found asteroids
Hubble Asteroid Hunter III. Physical properties of newly found asteroids
 
GFP in rDNA Technology (Biotechnology).pptx
GFP in rDNA Technology (Biotechnology).pptxGFP in rDNA Technology (Biotechnology).pptx
GFP in rDNA Technology (Biotechnology).pptx
 
A relative description on Sonoporation.pdf
A relative description on Sonoporation.pdfA relative description on Sonoporation.pdf
A relative description on Sonoporation.pdf
 
Neurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 trNeurodevelopmental disorders according to the dsm 5 tr
Neurodevelopmental disorders according to the dsm 5 tr
 
Natural Polymer Based Nanomaterials
Natural Polymer Based NanomaterialsNatural Polymer Based Nanomaterials
Natural Polymer Based Nanomaterials
 
Biopesticide (2).pptx .This slides helps to know the different types of biop...
Biopesticide (2).pptx .This slides helps to know the different types of biop...Biopesticide (2).pptx .This slides helps to know the different types of biop...
Biopesticide (2).pptx .This slides helps to know the different types of biop...
 
Animal Communication- Auditory and Visual.pptx
Animal Communication- Auditory and Visual.pptxAnimal Communication- Auditory and Visual.pptx
Animal Communication- Auditory and Visual.pptx
 
Module 4: Mendelian Genetics and Punnett Square
Module 4: Mendelian Genetics and Punnett SquareModule 4: Mendelian Genetics and Punnett Square
Module 4: Mendelian Genetics and Punnett Square
 
Artificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C PArtificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C P
 
Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)
 

Network biology: A crash course on STRING and Cytoscape