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Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




               On the Intelligent Management of Sepsis in the
                              Intensive Care Unit

                                                  Vicent J. Ribas

                                                  LSI - SOCO
                                     Technical University of Catalonia (UPC)
                                                   Barcelona


                                                 January 28, 2013



Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Contents
      1   Introduction
            Introduction
            Thesis Objectives

      2   Database Description
           Dataset
           Available Data
      3   State of the Art

      4   AI Methods Applied

      5   An AI Tour of Sepsis
           Incidence of Sepsis
           Protection against Sepsis
           Mortality Prediction with a Latent Data Representation
           Risk of Death Assessment from Observed Data
      6   Conclusions
           Incidence of Sepsis and Coadjuvant Factors
           Protective Effects of Statins
           Mortality Predictors and Their Accuracy
           Contributions
           Outline for Future Work
           Publications

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Contents
      1   Introduction
            Introduction
            Thesis Objectives

      2   Database Description
           Dataset
           Available Data
      3   State of the Art

      4   AI Methods Applied

      5   An AI Tour of Sepsis
           Incidence of Sepsis
           Protection against Sepsis
           Mortality Prediction with a Latent Data Representation
           Risk of Death Assessment from Observed Data
      6   Conclusions
           Incidence of Sepsis and Coadjuvant Factors
           Protective Effects of Statins
           Mortality Predictors and Their Accuracy
           Contributions
           Outline for Future Work
           Publications

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction


Introduction

                  Sepsis is a clinical syndrome defined by the presence of
                  infection and Systemic Inflammatory Response Syndrome
                  (SIRS).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction


Introduction

                  Sepsis is a clinical syndrome defined by the presence of
                  infection and Systemic Inflammatory Response Syndrome
                  (SIRS).
                  This can lead to severe sepsis or to septic shock (severe sepsis
                  with hypotension refractory to fluid administration) and
                  multi-organ failure.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction


Introduction

                  Sepsis is a clinical syndrome defined by the presence of
                  infection and Systemic Inflammatory Response Syndrome
                  (SIRS).
                  This can lead to severe sepsis or to septic shock (severe sepsis
                  with hypotension refractory to fluid administration) and
                  multi-organ failure.
                  In western countries, septic patients account for as much as
                  25% of ICU bed utilization and the pathology occurs in 1% -
                  2% of all hospitalizations.



Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction


Introduction

                  Sepsis is a clinical syndrome defined by the presence of
                  infection and Systemic Inflammatory Response Syndrome
                  (SIRS).
                  This can lead to severe sepsis or to septic shock (severe sepsis
                  with hypotension refractory to fluid administration) and
                  multi-organ failure.
                  In western countries, septic patients account for as much as
                  25% of ICU bed utilization and the pathology occurs in 1% -
                  2% of all hospitalizations.
                  The mortality rates of sepsis range from 12.8% for sepsis and
                  20.7% for severe sepsis, and up to 45.7% for septic shock.
Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction




                  The medical management of sepsis and the study of its
                  prognosis and outcome is a relevant medical research
                  challenge.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction




                  The medical management of sepsis and the study of its
                  prognosis and outcome is a relevant medical research
                  challenge.
                  Provided that such methods are to be used in a clinical
                  environment (ICU), it requires prediction methods that are
                  robust, accurate and readily interpretable.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Introduction




                  The medical management of sepsis and the study of its
                  prognosis and outcome is a relevant medical research
                  challenge.
                  Provided that such methods are to be used in a clinical
                  environment (ICU), it requires prediction methods that are
                  robust, accurate and readily interpretable.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction        Database Description   State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Thesis Objectives


Thesis Objectives


                  Improve our knowledge about the incidence of Sepsis.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction        Database Description   State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Thesis Objectives


Thesis Objectives


                  Improve our knowledge about the incidence of Sepsis.
                  Improve our understanding about Sepsis and its protective
                  factors.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction        Database Description   State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Thesis Objectives


Thesis Objectives


                  Improve our knowledge about the incidence of Sepsis.
                  Improve our understanding about Sepsis and its protective
                  factors.
                  Study of the evolution of Sepsis into more critical states with
                  respect to several management/measurement variables.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction        Database Description   State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Thesis Objectives


Thesis Objectives


                  Improve our knowledge about the incidence of Sepsis.
                  Improve our understanding about Sepsis and its protective
                  factors.
                  Study of the evolution of Sepsis into more critical states with
                  respect to several management/measurement variables.
                  Develop a system that could provide prognostic indicators of
                  mortality (RoD) that can be used in the ICU (acc., sens,
                  spec), if possible, at the onset of the pathology.


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Contents
      1   Introduction
            Introduction
            Thesis Objectives

      2   Database Description
           Dataset
           Available Data
      3   State of the Art

      4   AI Methods Applied

      5   An AI Tour of Sepsis
           Incidence of Sepsis
           Protection against Sepsis
           Mortality Prediction with a Latent Data Representation
           Risk of Death Assessment from Observed Data
      6   Conclusions
           Incidence of Sepsis and Coadjuvant Factors
           Protective Effects of Statins
           Mortality Predictors and Their Accuracy
           Contributions
           Outline for Future Work
           Publications

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Dataset


Available Datasets

                  A prospective observational cohort study of adult patients with
                  severe sepsis was conducted at the Critical Care Department
                  of the Vall d’ Hebron University Hospital (Barcelona, Spain).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Dataset


Available Datasets

                  A prospective observational cohort study of adult patients with
                  severe sepsis was conducted at the Critical Care Department
                  of the Vall d’ Hebron University Hospital (Barcelona, Spain).
                  Data from 750 and 354 patients with severe sepsis was
                  collected in this ICU between June, 2007 and December, 2010.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Dataset


Available Datasets

                  A prospective observational cohort study of adult patients with
                  severe sepsis was conducted at the Critical Care Department
                  of the Vall d’ Hebron University Hospital (Barcelona, Spain).
                  Data from 750 and 354 patients with severe sepsis was
                  collected in this ICU between June, 2007 and December, 2010.
                  55% of cases correspond to ‘medical’ sepsis.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Dataset


Available Datasets

                  A prospective observational cohort study of adult patients with
                  severe sepsis was conducted at the Critical Care Department
                  of the Vall d’ Hebron University Hospital (Barcelona, Spain).
                  Data from 750 and 354 patients with severe sepsis was
                  collected in this ICU between June, 2007 and December, 2010.
                  55% of cases correspond to ‘medical’ sepsis.
                  The mean age of the patients in the database was 57.08 (with
                  standard deviation ±16.65) years.



Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Dataset


Available Datasets

                  A prospective observational cohort study of adult patients with
                  severe sepsis was conducted at the Critical Care Department
                  of the Vall d’ Hebron University Hospital (Barcelona, Spain).
                  Data from 750 and 354 patients with severe sepsis was
                  collected in this ICU between June, 2007 and December, 2010.
                  55% of cases correspond to ‘medical’ sepsis.
                  The mean age of the patients in the database was 57.08 (with
                  standard deviation ±16.65) years.
                  40% of patients were female.

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Available Data


Available Attributes
                  The collected data show the worst values for all variables
                  during the first 24 hours of evolution of Severe Sepsis.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art          AI Methods Applied      An AI Tour of Sepsis      Conclusions




Available Data


Available Attributes
                  The collected data show the worst values for all variables
                  during the first 24 hours of evolution of Severe Sepsis.
                  Organ dysfunction was evaluated by means of the SOFA score
                  system, which objectively measures organ dysfunction for 6
                  organs/systems.
                           Cardiovascular (CV)       2.86   (1.62)      Haematologic (HAEMATO)         0.78   (1.14)
                           Respiratory (RESP)        2.31   (1.15)         Global SOFA score           7.94   (3.86)
                         Central Nerv. Sys. (CNS)    0.48   (1.00)            Dysf. Organs             1.68   (1.09)
                             Hepatic (HEPA)          0.48   (0.92)           Failure Organs            1.51   (1.02)
                               Renal (REN)           1.06   (1.20)         Total Dysf. Organs          3.18   (1.32)




Vicent J. Ribas                                                      LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art          AI Methods Applied      An AI Tour of Sepsis      Conclusions




Available Data


Available Attributes
                  The collected data show the worst values for all variables
                  during the first 24 hours of evolution of Severe Sepsis.
                  Organ dysfunction was evaluated by means of the SOFA score
                  system, which objectively measures organ dysfunction for 6
                  organs/systems.
                           Cardiovascular (CV)       2.86   (1.62)      Haematologic (HAEMATO)         0.78   (1.14)
                           Respiratory (RESP)        2.31   (1.15)         Global SOFA score           7.94   (3.86)
                         Central Nerv. Sys. (CNS)    0.48   (1.00)            Dysf. Organs             1.68   (1.09)
                             Hepatic (HEPA)          0.48   (0.92)           Failure Organs            1.51   (1.02)
                               Renal (REN)           1.06   (1.20)         Total Dysf. Organs          3.18   (1.32)

                  Severity was evaluated by means of the APACHE II score,
                  which was 23.03 ± 9.62 for the population under study.


Vicent J. Ribas                                                      LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art          AI Methods Applied      An AI Tour of Sepsis      Conclusions




Available Data


Available Attributes
                  The collected data show the worst values for all variables
                  during the first 24 hours of evolution of Severe Sepsis.
                  Organ dysfunction was evaluated by means of the SOFA score
                  system, which objectively measures organ dysfunction for 6
                  organs/systems.
                           Cardiovascular (CV)       2.86   (1.62)      Haematologic (HAEMATO)         0.78   (1.14)
                           Respiratory (RESP)        2.31   (1.15)         Global SOFA score           7.94   (3.86)
                         Central Nerv. Sys. (CNS)    0.48   (1.00)            Dysf. Organs             1.68   (1.09)
                             Hepatic (HEPA)          0.48   (0.92)           Failure Organs            1.51   (1.02)
                               Renal (REN)           1.06   (1.20)         Total Dysf. Organs          3.18   (1.32)

                  Severity was evaluated by means of the APACHE II score,
                  which was 23.03 ± 9.62 for the population under study.
                  The mortality rate intra-ICU for our study population was
                  26.32%.
Vicent J. Ribas                                                      LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art        AI Methods Applied      An AI Tour of Sepsis     Conclusions




Available Data


Available Attributes

       List of attributes used in this study:
          Age                                                                                Haemocultures 6h
                                                  Dysfunctional Organs for
          Gender                                  SOFA 1-2                                   Antibiotics 6h

          Sepsis Focus                            Dysfunctional Organs for                   Volume 6h
                                                  SOFA 3-4                                   O2 Central Venous Saturation
          Germ Class
                                                  Total Number of                            6h
          Polimicrobial Infection
                                                  Dysfunctional Organs                       Haematocrit 6h
          Base Pathology
                                                  Mechanical Ventilation                     Transfusions 6h
          Cardiovascular SOFA Score
                                                  Oxygenation Index                          Dobutamine 6h
          Respiratory SOFA Score                  PaO2 /FiO2
                                                                                             Surviving Sepsis Campaign
          CNS SOFA score                          Vasoactive Drugs                           Bundles 24h
          Hepatic SOFA Score                      Platelet Count                             Glycaemia 24h
          Renal SOFA Score                        APACHE II Score                            PPlateau
          Haematologic SOFA Score                 Surviving Sepsis Campaign                  Worst Lactate
          Total SOFA Score                        Bundles 6h
                                                                                             O2 Central Venous Saturation


Vicent J. Ribas                                                    LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Contents
      1   Introduction
            Introduction
            Thesis Objectives

      2   Database Description
           Dataset
           Available Data
      3   State of the Art

      4   AI Methods Applied

      5   An AI Tour of Sepsis
           Incidence of Sepsis
           Protection against Sepsis
           Mortality Prediction with a Latent Data Representation
           Risk of Death Assessment from Observed Data
      6   Conclusions
           Incidence of Sepsis and Coadjuvant Factors
           Protective Effects of Statins
           Mortality Predictors and Their Accuracy
           Contributions
           Outline for Future Work
           Publications

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Quantitative Analysis of the Pathophysiology of Sepsis


                                Reference           Objective        Model           Variables
                            Rackow et al. 1991      Severity         ODE              B. Flow
                                                                                       MAP
                                                                                     Art. Res
                                                                                 React. Hyperemia
                           Kimberly et al. 2000      Shock       Autonomic              HR
                                                                  Coupling              BP
                             Ross et al. 1998        Inflam.        ODE               Pathogen
                                                      Shock      ANN (RBF)         Cell Damage
                                                                                  Immuno. Resp.
                            Othman et al. 2003       Shock           Gastric        Impedance
                                and 2004                             Mucosa




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art        AI Methods Applied      An AI Tour of Sepsis     Conclusions




Quantitative Analysis of the Prognosis of Sepsis (Medical
Practice)

                                    Reference          Objective        Model       Variables
                                 Knaus et al. 1985      Eval.            LR           SOFA
                                                        MODS                       APACHE II
                                                                                      LODS
                                 Adler et al. 2008       Sepsis          LR          SAPS 3
                                 Paetz et al. 2001       Shock          RBF            SBP
                                                                                   Thrombocit.
                                                                                      Lact.
                                 Savkin et al. 2010      Sepsis         SVM          Culture
                                                                                     RR, HR
                                                                                      Lact.
                                                                                    White cell
                                Brause et al. 2002       Sepsis        HMM         Sep. States
                                                                      Full Obs.




Vicent J. Ribas                                                    LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Contents
      1   Introduction
            Introduction
            Thesis Objectives

      2   Database Description
           Dataset
           Available Data
      3   State of the Art

      4   AI Methods Applied

      5   An AI Tour of Sepsis
           Incidence of Sepsis
           Protection against Sepsis
           Mortality Prediction with a Latent Data Representation
           Risk of Death Assessment from Observed Data
      6   Conclusions
           Incidence of Sepsis and Coadjuvant Factors
           Protective Effects of Statins
           Mortality Predictors and Their Accuracy
           Contributions
           Outline for Future Work
           Publications

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




AI Methods Applied




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




AI Methods Applied

                  Graphical models from Algebraic Statistics chapter 6.
                  CART chapter 6.
                  Logistic regression over latent factors chapter 7.
                  Shrinkage methods chapter 8. [Hastie]
                  Support Vector Machines chapter 8 [Sch¨lkopf, Christianini].
                                                        o
                  Generative kernels chapter 8.
                        Simplified Fisher kernel.
                        Quotient Basis Kernel.
                        Kernels based on the JS metric.
                  Relevance Vector Machines chapter 8 [Tipping, Fletcher].

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Shrinkage methods


                                                                                      M
                  Linear Regression: minw Lλ (w, y, x) =                              i=1 (yi   − g (xi ))2 ,




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Shrinkage methods


                                                                                      M
                  Linear Regression: minw Lλ (w, y, x) =                              i=1 (yi   − g (xi ))2 ,
                  Ridge regression:
                                                                             M
                  minw Lλ (w, y, x) = minw λ w                       2   +   i=1 (yi     − g (xi ))2 ,




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Shrinkage methods


                                                                                      M
                  Linear Regression: minw Lλ (w, y, x) =                              i=1 (yi   − g (xi ))2 ,
                  Ridge regression:
                                                                              M
                  minw Lλ (w, y, x) = minw λ w                       2   +    i=1 (yi    − g (xi ))2 ,
                  Lasso (L1 loss function):
                                                                             M
                  minw Lλ (w, y, x) = minw λ|w|1 +                           i=1 (yi    − g (xi ))2 ,




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Shrinkage methods


                                                                                      M
                  Linear Regression: minw Lλ (w, y, x) =                              i=1 (yi   − g (xi ))2 ,
                  Ridge regression:
                                                                              M
                  minw Lλ (w, y, x) = minw λ w                       2   +    i=1 (yi    − g (xi ))2 ,
                  Lasso (L1 loss function):
                                                                             M
                  minw Lλ (w, y, x) = minw λ|w|1 +                           i=1 (yi    − g (xi ))2 ,
                  Relevance vector machine (SVM with priors) [Tipping,
                  Fletcher].



Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Why generative kernels?

                  Selection of kernel function for a given problem is not trivial.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Why generative kernels?

                  Selection of kernel function for a given problem is not trivial.
                  One normally must have good insight about the problem at
                  hand.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Why generative kernels?

                  Selection of kernel function for a given problem is not trivial.
                  One normally must have good insight about the problem at
                  hand.
                  Mapping over higher dimensions simplifies the problem but
                  computational cost grows with ∼ d 3 .




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Why generative kernels?

                  Selection of kernel function for a given problem is not trivial.
                  One normally must have good insight about the problem at
                  hand.
                  Mapping over higher dimensions simplifies the problem but
                  computational cost grows with ∼ d 3 .
                  Solution: exploit the statistical structure of the data to build
                  the kernel!




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Why generative kernels?

                  Selection of kernel function for a given problem is not trivial.
                  One normally must have good insight about the problem at
                  hand.
                  Mapping over higher dimensions simplifies the problem but
                  computational cost grows with ∼ d 3 .
                  Solution: exploit the statistical structure of the data to build
                  the kernel!
                  Requirement: pdf must be a regular exponential family. This
                  requirement is fulfilled by the dataset of this Ph.D.!

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Generative kernels

                  We propose three generative approaches:




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Generative kernels

                  We propose three generative approaches:
                        exploit the algebraic structure of the dataset (Quotient Basis).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Generative kernels

                  We propose three generative approaches:
                        exploit the algebraic structure of the dataset (Quotient Basis).
                        exploit the momentum generation properties of regular
                        exponential families (i.e. the second derivative of the
                        log-Laplace function G corresponds to the covariance) to
                        calculate the Fisher kernel.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Generative kernels

                  We propose three generative approaches:
                        exploit the algebraic structure of the dataset (Quotient Basis).
                        exploit the momentum generation properties of regular
                        exponential families (i.e. the second derivative of the
                        log-Laplace function G corresponds to the covariance) to
                        calculate the Fisher kernel.
                        use the dual of the log-Laplace function, which corresponds to
                        the negative entropy, and a metric (Jensen-Shannon) to build
                        the kernels through application of the properties for pd and nd
                        functions (i.e. centering, inversion and exponentiation).


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Quotient Basis Kernel


       Let A be a set of n unique points A = {a1 , . . . , an } and τ a term
       ordering. A Gr¨bner basis of A, G = g1 , . . . , gt , is a Gr¨bner basis
                      o                                             o
       of I (A). Therefore, the points in A can be presented as the set of
       solutions of               
                                   g1 (a) = 0
                                  
                                      g2 (a) = 0
                                  
                                  
                                         ···
                                      gt (a) = 0
                                  




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Quotient Basis Kernel


       Let A, be a set of n × s unique support points A = {a1 , . . . , an }
       and τ a term ordering. A monomial basis of the set of polynomial
       functions over A is

                              ESTτ = {x α : x α ∈ LT(g ) : g ∈ I (A) }
                                                /

       This means that ESTτ comprises the elements x α that are not
       divisible by any of the leading terms of the elements of the Gr¨bner
                                                                      o
       basis of I (A).


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Quotient Basis Kernel


       Let τ be a term ordering and let us consider an ordering over the
       support points A = {a1 , . . . , an }. We call design matrix (i.e. ESTτ
       evaluated in A) the following n × c matrix

                                                   Z = [ESTτ ]          A
       where c is the cardinality of ESTτ and n is the number of support
       points. The covariance of the design matrix of ESTτ , which is a
       kernel, is the QBK.



Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Simplified Fisher Kernel
       Let P = (P|η ∈ N) be a regular exponential family with canonical
       sufficient statistic T . Then the log likelihood function takes the
       form
                             l(η|T ) = n(η t T − G (η))
       The score function is the gradient

                                                   ∂l(η|T )        ∂
                                U(T , η) =                  = nT −    G (η)
                                                     ∂η            ∂η
       So the simplified Fisher Kernel is:

                                         k(x, z) = U(Tx , η)U(Tz , η)t

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Kernels based on the Jensen Shannon Metric




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Kernels based on the Jensen Shannon Metric

       Let P = (P|η ∈ N) be a regular exponential family with canonical
       sufficient statistic T . Then the log likelihood function takes the
       form
                             l(η|T ) = n(η t T − G (η))
       This function accepts a convex - conjugate (Legendre Dual) of the
       form
                            l(γ|T ) = n(γ t T − F (γ))
       In our case, the dual F is the negative log-entropy function.


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Kernels based on the Jensen Shannon Metric


                                               F (γ1 ) + F (γ2 )                      γ1 + γ2
                          JS(γ1 , γ2 ) =                         −F                                .
                                                       2                                 2

                  Centred kernel:
                  φ(x, y ) = JS(x, x0 ) + JS(y , x0 ) − JS(x, y ) − JS(x0 , x0 ).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Kernels based on the Jensen Shannon Metric


                                               F (γ1 ) + F (γ2 )                      γ1 + γ2
                          JS(γ1 , γ2 ) =                         −F                                .
                                                       2                                 2

                  Centred kernel:
                  φ(x, y ) = JS(x, x0 ) + JS(y , x0 ) − JS(x, y ) − JS(x0 , x0 ).
                  Exponentiated kernel: φ(x, y ) = exp(−tJS(x, y )) ∀t > 0.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Kernels based on the Jensen Shannon Metric


                                               F (γ1 ) + F (γ2 )                      γ1 + γ2
                          JS(γ1 , γ2 ) =                         −F                                .
                                                       2                                 2

                  Centred kernel:
                  φ(x, y ) = JS(x, x0 ) + JS(y , x0 ) − JS(x, y ) − JS(x0 , x0 ).
                  Exponentiated kernel: φ(x, y ) = exp(−tJS(x, y )) ∀t > 0.
                                                             1
                  Inverse kernel: φ(x, y ) =              t+JS(x,y )     ∀t > 0.



Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Contents
      1   Introduction
            Introduction
            Thesis Objectives

      2   Database Description
           Dataset
           Available Data
      3   State of the Art

      4   AI Methods Applied

      5   An AI Tour of Sepsis
           Incidence of Sepsis
           Protection against Sepsis
           Mortality Prediction with a Latent Data Representation
           Risk of Death Assessment from Observed Data
      6   Conclusions
           Incidence of Sepsis and Coadjuvant Factors
           Protective Effects of Statins
           Mortality Predictors and Their Accuracy
           Contributions
           Outline for Future Work
           Publications

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Route map




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis


SOFA Score and Sepsis


                  Study based on the basal SOFA scale.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis


SOFA Score and Sepsis


                  Study based on the basal SOFA scale.
                  A SOFA≥2 is demonstrative of MODS while a SOFA-CV > 2
                  is demonstrative of Septic Shock.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis


SOFA Score and Sepsis


                  Study based on the basal SOFA scale.
                  A SOFA≥2 is demonstrative of MODS while a SOFA-CV > 2
                  is demonstrative of Septic Shock.
                  By the definition of SOFA it is obvious that Severe Sepsis,
                  Shock and MODS are dependent on each other (i.e. all imply
                  organ dysfunction).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction        Database Description   State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis


Bayes Network for Sepsis

                                                                          node X1 corresponds to the
               X1                             X2                          unobserved number of
                                                                          Severe Sepsis.
                                                                          node X2 corresponds to
                                                                          Septic Shock.
                                                                          node X3 corresponds to
                                                                          MODS.
               X3                             X4                          node X4 corresponds to ICU
                                                                          result.

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis


Incidence of Sepsis


                  Bayes Network yields an incidence of 164 cases / 100000 hab
                  (i.e. 164 vs 118 in our database).
                  The incidence reported in Madrid is 141 cases / 100000 hab.
                  and Castilla Le´n is 250 cases / 100000 hab.
                                 o
                  The discrepancy between these figures lies mainly in the study
                  design (haemocultures at admission vs. people being treated
                  for Sepsis).



Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Statins
                  Statins is a common drug for the treatment of high
                  cholesterol levels.
                  Beyond their hypolipemic properties, they also exercise
                  anti-inflammatory, immunomodulator and antioxidant actions.
                  Statins modulate vasoreactivity in the coagulation system.
                  Recent studies suggest that they present beneficial effects for
                  infection prevention and treatment, impacting the ICU
                  outcome.
                  These results are still controversial in the medical community.
                  In our dataset with 750 patients, 106 (i.e. 14.13%) received
                  preadmission treatment with statins.
Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Hypothesis



                  In our dataset with 750 patients, 106 (i.e. 14.13%) received
                  preadmission treatment with statins.
                  Do statins play a protective role in the prognosis of Sepsis?
                  Does this role depend on the Sepsis continuum (MODS and
                  Septic Shock)?




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Models of Conditional Independence

       We aim to find the relation between the administration of statin
       drugs prior to ICU admission and the mortality rate in Severe
       Sepsis patients. Thus, we test the null hypothesis that the ICU
       outcome is independent of the preadmission use of statins
       for given APACHE II and SOFA scores. Ho :

                                     Ho : {X1 } ⊥ {X4 }|{X2 }, {X3 }.
                                                ⊥                                                                (1)

       where {X1 } is the ICU outcome, {X4 } the preadmission use of
       statins, {X3 } the SOFA score, and {X2 } the APACHE II score.


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Models of Conditional Independence
       We have two options based on Algebraic Models to reject Ho :
           study the rank of the minors of our observation matrix
           (tedious for large datasets).
           Algebraic Interpolation (more fun):
                       Assume that our observed dataset are the zeroes of polynomial
                       set of equations (and an order on the variables).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Models of Conditional Independence
       We have two options based on Algebraic Models to reject Ho :
           study the rank of the minors of our observation matrix
           (tedious for large datasets).
           Algebraic Interpolation (more fun):
                       Assume that our observed dataset are the zeroes of polynomial
                       set of equations (and an order on the variables).
                       On a first level of abstraction there is a Polynomial Ideal
                       associated to this set of equations (vanishing ideal).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Models of Conditional Independence
       We have two options based on Algebraic Models to reject Ho :
           study the rank of the minors of our observation matrix
           (tedious for large datasets).
           Algebraic Interpolation (more fun):
                       Assume that our observed dataset are the zeroes of polynomial
                       set of equations (and an order on the variables).
                       On a first level of abstraction there is a Polynomial Ideal
                       associated to this set of equations (vanishing ideal).
                       On a second level of abstraction, this ideal is generated by a
                       finite basis (Hilbert basis theorem). This is a Gr¨bner basis.
                                                                         o




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Models of Conditional Independence
       We have two options based on Algebraic Models to reject Ho :
           study the rank of the minors of our observation matrix
           (tedious for large datasets).
           Algebraic Interpolation (more fun):
                       Assume that our observed dataset are the zeroes of polynomial
                       set of equations (and an order on the variables).
                       On a first level of abstraction there is a Polynomial Ideal
                       associated to this set of equations (vanishing ideal).
                       On a second level of abstraction, this ideal is generated by a
                       finite basis (Hilbert basis theorem). This is a Gr¨bner basis.
                                                                         o
                       On a third level of abstraction, the terms of the ordering that
                       are not divided by the leading terms of the Gr¨bner basis are
                                                                       o
                       defined as a Quotient Basis.
Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Algebraic Interpolation

                                                                          The resulting products between
                                                                          terms of the Quotient Basis
         Statins        SOFA         APACHE II
            1             1             1                                 show the
            2             1             1                                 interaction/dependence
            1             2             1                                 between terms.
            2             2             1
            1             1             2                                 By the Hammersley - Clifford
            2             1             2                                 theorem (factorisation of the
            1             2             2                                 terms of the Quotient Basis)
            2             2             2
                                                                          show that there is a Graphical
                                                                          Model associated to the
                                                                          vanishing ideal.

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description        State of the Art   AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Algebraic Interpolation

                                                           Ordering: x1 x2 x3 x1 x2                  x1 x3
      x1                                 x2                x1 x2 x3 x2 x3 1
                                                           Ideal I =
                                                             2             2             2
                                                            x3 − 3x3 + 2, x2 − 3x2 + 2, x1 − 3x1 + 2 .
                                                           Gr¨bner G =
                                                             o
                                                             2 − 3x + 2, x 2 − 3x + 2, x 2 − 3x + 2 .
                                                            x3     3      2      2      1      1
                                                           Quotient Basis
      x3                                 x4
                                                           B = {1, x3 , x2 , x2 x3 , x1 , x1 x3 , x1 x2 , x1 x2 x3 }.


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Algebraic Interpolation


           P(x4 ) = η7 x1 x2 x3 + η6 x1 x2 + η5 x1 x3
                                                        − η4 x2 x3 − η3 x1 + η2 x2 + η1 x3 + η0

       Solving for {x1 , x2 , x3 } by substitution and also knowing that
       η0 = 1 − 7 ηi yields the interpolation polynomial
                   i=1



           P(x4 ) = −1/50x1 x2 x3 + 3/100x1 x2 + 9/100x1 x3
                            − 3/25x2 x3 − 21/100x1 + 27/100x2 + 8/25x3 + 7/25

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Algebraic Interpolation
         Statins         SOFA         APACHE II               Result=1       Result=2
               1             1               1                  0.64             0.36
               2             1               1                  0.53             0.47
               1             2               1                  0.80             0.20
               2             2               1                  0.70             0.30
               1             1               2                  0.91             0.09
               2             1               2                  0.87             0.13
               1             2               2                  0.93             0.07
               2             2               2                  0.88             0.12

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Algebraic Interpolation
         Statins         SOFA         APACHE II               Result=1       Result=2
               1             1               1                  0.64             0.36
               2             1               1                  0.53             0.47
               1             2               1                  0.80             0.20
               2             2               1                  0.70             0.30
               1             1               2                  0.91             0.09
               2             1               2                  0.87             0.13
               1             2               2                  0.93             0.07
               2             2               2                  0.88             0.12

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Protection against Sepsis


Analysis with Decision Trees




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Factor Analysis




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Factor Analysis


                  A Factor Analysis (FA) model concerns a Gaussian hidden
                  variable model with d observed variables Xi and k hidden
                  variables Yi .
                  FA assumes (X , Y ) follows a joint multivariate normal
                  distribution with positive definite covariance matrix.
                  What is sought is a model of the form x − µ = Λ + .




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Factor Analysis


       The FA model Fd,k is the family of multivariate normal
       distributions Nd (µ, Σ) on Rd whose mean vector µ is an arbitrary
       vector in Rd and whose covariance matrix Σ lies in the
       (non-convex) cone

                       Fd,k = {Ω + ΛΛt ∈ Rd×d : Ω                           0 diagonal, Λ ∈ Rd×k }

         = {Ω + Ψ ∈ Rd×d : Ω                         0 diagonal, Ψ               0 symmetric, rank (Ψ) ≤ k}.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Factor Analysis
                  Factor 1: cardiovascular function, cardiovascular SOFA score
                  and vasoactive drugs.
                  Factor 2: haematologic function (haematologic SOFA score
                  and platelet count).
                  Factor 3: respiratory function, Respiratory SOFA score and
                  PaO2 /FiO2 ratio.
                  Factor 4: use of mechanical ventilation and PPlateau.
                  Factor 5: 24h SSC bundles and glycaemic indices.
                  Factor 6: micro-organism producing the Sepsis and whether
                  this sepsis polimicrobial or not.
                  Factor 7: renal function measured by the SOFA score and
                  total SOFA score.
Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Factor Analysis

                  Factor 8: antibiotics and haemocultures during the first 6h of
                  ICU stay.
                  Factor 9: number of organs in dysfunction.
                  Factor 10: hepatic function measured by the SOFA score.
                  Factor 11: CNS function and number of organs in dysfunction.
                  Factor 12: loci of Sepsis and poly-microbial.
                  Factor 13: APACHE II score and worst lactate levels.
                  Factor 14: Total number of organs in dysfunction.


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Logistic Regression


       Log-odd ratio of a Binomial distribution is

                                                    p
                                          log                    = β0 + βX.                                      (2)
                                                   1−p

       Where β0 is the intercept and β is vector of logistic regression
       coefficients estimated through ML with a generalised linear model.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Experiment setting


                  10-Fold cross-validation.
                  LR over Latent Factors (backward feature selection).
                  Subset selection of the Original Variables (backward feature
                  selection).
                  Comparison with RoD formula based on the APACHE II score
                      ROD
                  ln 1−ROD = −3.517 + 0.146 · A + .




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Logistic Regression over Latent Factors


                                              β Coeff          MAX          MIN        Z-score
                            Intercept            1.22          1.53         .87         7.11
                                 F4             -0.54          -0.23      -0.86         -3.38
                                F10             -0.69          -0.38      -1.05         -4.26
                                 F9             -0.51          -0.21      -0.81         -3.36
                                F13             -0.49          -0.24      -0.74         -3.80




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Logistic Regression over Latent Factors



                                                 β Coeff          MAX         MIN        Z-score
                            Intercept              4.20          3.11        5.29         7.56
                           APACHE II              -0.08          -0.13      -0.04         -3.77
                          Worst Lact.             -0.25          -0.38      -0.11         -3.63




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Mortality Prediction with a Latent Data Representation


Results



                     Method              AUC       Error Rate          Sens.       Spec.        Dataset
                      LR-FA              0.78            0.24           0.65          0.80         FA
                         LR              0.75            0.30           0.64          0.72         LR
                  APACHE II              0.70            0.28           0.82          0.55        N/A




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


RoD with RVM

                  The model performance was evaluated by means of 10-Fold
                  Cross-Validation.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


RoD with RVM

                  The model performance was evaluated by means of 10-Fold
                  Cross-Validation.
                  The RVM yielded an accuracy of mortality prediction of 0.86;
                  a prediction error of 0.18; a sensitivity of 0.67; and a
                  specificity of 0.87.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


RoD with RVM

                  The model performance was evaluated by means of 10-Fold
                  Cross-Validation.
                  The RVM yielded an accuracy of mortality prediction of 0.86;
                  a prediction error of 0.18; a sensitivity of 0.67; and a
                  specificity of 0.87.
                  RVM selected the following attributes (corresponding to
                  weights):
                        Number of dysfunctional organs (w1 = −0.039)
                        Mechanical Ventilation (w2 = −0.101)
                        APACHE II (w3 = −0.337)
                        Resuscitation Bundles (6h) (w4 = 0.037)

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data




                  The coefficients corresponding to the rest of attributes were
                  set to values close to zero as part of the training process. This
                  reduces the number of attributes (34 to just 4) and improves
                  its interpretability.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data




                  The coefficients corresponding to the rest of attributes were
                  set to values close to zero as part of the training process. This
                  reduces the number of attributes (34 to just 4) and improves
                  its interpretability.
                  The negative weights (number of dysfunctional organs,
                  mechanical ventilation, APACHE II) are related to a higher
                  mortality risk.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data




                  The coefficients corresponding to the rest of attributes were
                  set to values close to zero as part of the training process. This
                  reduces the number of attributes (34 to just 4) and improves
                  its interpretability.
                  The negative weights (number of dysfunctional organs,
                  mechanical ventilation, APACHE II) are related to a higher
                  mortality risk.
                  The SSC bundles (resuscitation bundles) are associated to a
                  protective effect (i.e. antibiotics administration, performance
                  of haemocultures, administration of volume and vasoactive
                  drugs and so on).


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


Comparison with other shrinkage methods

                  The predictive ability of the RVM has also been compared to
                  that of other well established shrinkage methods for regression.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


Comparison with other shrinkage methods

                  The predictive ability of the RVM has also been compared to
                  that of other well established shrinkage methods for regression.
                  The selected attributes and coefficients for each method were:
                                             Lasso:
                                                      Age (w1 = 0.007)
   Ridge Regression:                                  Germ Class (w2 = 0.005)          Logistic Regression with backward
                                                                                      feature selection:
          Number of dysfunctional                     PaO2 /FiO2 (w3 = 0.001)
          organs for SOFA 3-4                         APACHE II (w4 = −0.006)                 Intercept (w1 = 4.20)
          (w1 = −0.021)                                                                       Number of Dysfunctional
                                                      SvcO2 6h (w5 = −0.001)
          APACHE II (w2 = −0.127)                                                             Organs (w1 = −0.12)
                                                      Haematocrit 6h
          Worst Lactate                               (w6 = 0.009)                            APACHE II (w2 = −0.08)
          (w3 = −0.126).                                                                      Worst Lactate (w3 = −0.25)
                                                      Worst Lactate
                                                      (w7 = −0.023)
                                                      SvcO2 (w8 = −0.006).


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data




                  The three shrinkage methods evaluated in this section agreed
                  in detecting as prognostic factors the Severity measured by
                  the APACHE II score and acidosis.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data




                  The three shrinkage methods evaluated in this section agreed
                  in detecting as prognostic factors the Severity measured by
                  the APACHE II score and acidosis.
                  Organ dysfunction and mechanical ventilation or other
                  parameters related to it like PaO2 /FiO2 also play a role in the
                  prognosis of Sepsis.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description        State of the Art        AI Methods Applied       An AI Tour of Sepsis    Conclusions




Risk of Death Assessment from Observed Data




                  The three shrinkage methods evaluated in this section agreed
                  in detecting as prognostic factors the Severity measured by
                  the APACHE II score and acidosis.
                  Organ dysfunction and mechanical ventilation or other
                  parameters related to it like PaO2 /FiO2 also play a role in the
                  prognosis of Sepsis.
                  The accuracy of each method was the following:

                                          Method     AUC          Error Rate   Sens.    Spec.
                                           RVM       0.86            0.18      0.67     0.87
                                          Logistic   0.75            0.30      0.64     0.72
                                           Ridge     0.70            0.25      0.63     0.79
                                           Lasso     0.70            0.32      0.67     0.68




Vicent J. Ribas                                                        LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


RoD with Generative Kernels - QBK -


                  x1 is the Number of Dysfunctional Organs as measured by the
                  SOFA Score.
                  x2 corresponds to Mechanical Ventilation (yes/no).
                  x3 corresponds to Severity as Measured by the APACHE II
                  Score.
                  x4 corresponds to the SSC Resuscitation Bundles (i.e.
                  administration of antibiotics, performance of haemocultures
                  and so on). This is also a binary variable.


Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description       State of the Art    AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


RoD with Generative Kernels - QBK -
                                                                                                
                                         
                                                         1, x4 , x3 , x3 x4 ,                   
                                                                                                 
                                                                                                
                                         
                                         
                                                   x2 , x2 x4 , x2 x3 , x2 x3 x4 ,              
                                                                                                 
                                                                                                 
                                         
                                         
                                                    2 2           2        2
                                                   x2 , x2 x4 , x2 x3 , x2 x3 x4 ,
                                                                                                 
                                                                                                 
                                                                                                 
                                                                                                
                                                     3 3           3        3
                                                                                                
                                         
                                         
                                                  x2 , x2 x4 , x2 x3 , x2 x3 x4 ,               
                                                                                                 
                                                                                                 
                                                     4, x 4x , x 4x , x 4x x ,
                                                                                                
                                                   x2 2 4 2 3 2 3 4
                                         
                                                                                                
                                                                                                 
                                                                                                
                         ESTτ =                           5 5           6
                                                         x2 , x2 x4 , x2 , x1 ,
                                                  x1 x4 , x1 x3 , x1 x3 x4 , x1 x2 ,
                                         
                                                                                                
                                                                                                 
                                         
                                                                                                
                                                                                                 
                                         
                                         
                                                                                     2
                                              x1 x2 x4 , x1 x2 x3 , x1 x2 x3 x4 , x1 x2 ,
                                                                                                 
                                                                                                 
                                                                                                 
                                                                                                
                                         
                                         
                                                 2           2           2            3
                                              x1 x2 x4 , x1 x2 x3 , x1 x2 x3 x4 , x1 x2 ,
                                                                                                 
                                                                                                 
                                                                                                 
                                                                                                
                                         
                                         
                                                 3x , x x 3x , x x 3x x , x x 4,
                                              x1 x2 4 1 2 3 1 2 3 4 1 2
                                                                                                 
                                                                                                 
                                                                                                 
                                                                                                
                                                          4           4         5
                                                                                                
                                                    x1 x2 x4 , x1 x2 x3 , x1 x2                 

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description    State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


RoD with Generative Kernels

       We have used Matlab’s Support Vector Machine QP solver
       implemented in the BioInformatics and Optimization Toolboxes.
       We have also used 10-fold cross validation to evaluate the
       classification performance for the different kernels. A grid search
       yielded the appropriate values for C parameters for each Kernel.
       More particularly,
                  Quotient Basis and Fisher C = 1.
                  Generative Kernels C = 10. Also the parameter t for the
                  Exponential and Inverse Kernels was set to 2.
                  Gaussian, Linear and Polynomial Kernels C = 10.

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description      State of the Art     AI Methods Applied      An AI Tour of Sepsis     Conclusions




Risk of Death Assessment from Observed Data


RoD with Generative Kernels

                   Kernel             AUC         Error Rate         Sens.       Spec.        CPU time [s]
                  Quotient               0.89         0.18            0.70        0.86              1.45
                   Fisher                0.76         0.18            0.68        0.86              1.39
                Exponential              0.75         0.21            0.70        0.82              1.64
                  Inverse                0.62         0.22            0.70        0.82              1.68
                  Centred                0.75         0.21            0.70        0.82              1.99
                  Gaussian               0.83         0.24            0.65        0.81              1.56
               Poly (order 2)            0.69         0.28            0.71        0.76              1.59
                   Linear                0.62         0.26            0.62        0.78              1.35
Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction      Database Description     State of the Art      AI Methods Applied      An AI Tour of Sepsis     Conclusions




Contents
      1   Introduction
            Introduction
            Thesis Objectives

      2   Database Description
           Dataset
           Available Data
      3   State of the Art

      4   AI Methods Applied

      5   An AI Tour of Sepsis
           Incidence of Sepsis
           Protection against Sepsis
           Mortality Prediction with a Latent Data Representation
           Risk of Death Assessment from Observed Data
      6   Conclusions
           Incidence of Sepsis and Coadjuvant Factors
           Protective Effects of Statins
           Mortality Predictors and Their Accuracy
           Contributions
           Outline for Future Work
           Publications

Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description      State of the Art    AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis and Coadjuvant Factors


Incidence of Sepsis and Coadjutant Factors
                  SIRS pathology has proven to be a very sensitive indicator of
                  Sepsis but also one of poor specificity.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description      State of the Art    AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis and Coadjuvant Factors


Incidence of Sepsis and Coadjutant Factors
                  SIRS pathology has proven to be a very sensitive indicator of
                  Sepsis but also one of poor specificity.
                  Castilla y Le´n report an incidence of 250 cases /100.000 hab.
                               o
                  and Madrid 141 cases/100.000 hab.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description      State of the Art    AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis and Coadjuvant Factors


Incidence of Sepsis and Coadjutant Factors
                  SIRS pathology has proven to be a very sensitive indicator of
                  Sepsis but also one of poor specificity.
                  Castilla y Le´n report an incidence of 250 cases /100.000 hab.
                               o
                  and Madrid 141 cases/100.000 hab.
                  Our Bayes Network yielded an estimation of 164 cases /
                  100.000 hab (i.e. 164 vs 118 in our database).




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
Introduction       Database Description      State of the Art    AI Methods Applied      An AI Tour of Sepsis     Conclusions




Incidence of Sepsis and Coadjuvant Factors


Incidence of Sepsis and Coadjutant Factors
                  SIRS pathology has proven to be a very sensitive indicator of
                  Sepsis but also one of poor specificity.
                  Castilla y Le´n report an incidence of 250 cases /100.000 hab.
                               o
                  and Madrid 141 cases/100.000 hab.
                  Our Bayes Network yielded an estimation of 164 cases /
                  100.000 hab (i.e. 164 vs 118 in our database).
                  There are different comorbidities and coadjuvant factors that
                  clearly play a role in Sepsis.




Vicent J. Ribas                                                  LSI - SOCO Technical University of Catalonia (UPC) Barcelona
On the Intelligent Management of Sepsis in the Intensive Care Unit
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PhD Defense

  • 1. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions On the Intelligent Management of Sepsis in the Intensive Care Unit Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona January 28, 2013 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 2. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 3. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Contents 1 Introduction Introduction Thesis Objectives 2 Database Description Dataset Available Data 3 State of the Art 4 AI Methods Applied 5 An AI Tour of Sepsis Incidence of Sepsis Protection against Sepsis Mortality Prediction with a Latent Data Representation Risk of Death Assessment from Observed Data 6 Conclusions Incidence of Sepsis and Coadjuvant Factors Protective Effects of Statins Mortality Predictors and Their Accuracy Contributions Outline for Future Work Publications Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 4. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Contents 1 Introduction Introduction Thesis Objectives 2 Database Description Dataset Available Data 3 State of the Art 4 AI Methods Applied 5 An AI Tour of Sepsis Incidence of Sepsis Protection against Sepsis Mortality Prediction with a Latent Data Representation Risk of Death Assessment from Observed Data 6 Conclusions Incidence of Sepsis and Coadjuvant Factors Protective Effects of Statins Mortality Predictors and Their Accuracy Contributions Outline for Future Work Publications Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 5. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 6. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction Introduction Sepsis is a clinical syndrome defined by the presence of infection and Systemic Inflammatory Response Syndrome (SIRS). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 7. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction Introduction Sepsis is a clinical syndrome defined by the presence of infection and Systemic Inflammatory Response Syndrome (SIRS). This can lead to severe sepsis or to septic shock (severe sepsis with hypotension refractory to fluid administration) and multi-organ failure. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 8. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction Introduction Sepsis is a clinical syndrome defined by the presence of infection and Systemic Inflammatory Response Syndrome (SIRS). This can lead to severe sepsis or to septic shock (severe sepsis with hypotension refractory to fluid administration) and multi-organ failure. In western countries, septic patients account for as much as 25% of ICU bed utilization and the pathology occurs in 1% - 2% of all hospitalizations. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 9. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction Introduction Sepsis is a clinical syndrome defined by the presence of infection and Systemic Inflammatory Response Syndrome (SIRS). This can lead to severe sepsis or to septic shock (severe sepsis with hypotension refractory to fluid administration) and multi-organ failure. In western countries, septic patients account for as much as 25% of ICU bed utilization and the pathology occurs in 1% - 2% of all hospitalizations. The mortality rates of sepsis range from 12.8% for sepsis and 20.7% for severe sepsis, and up to 45.7% for septic shock. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 10. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction The medical management of sepsis and the study of its prognosis and outcome is a relevant medical research challenge. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 11. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction The medical management of sepsis and the study of its prognosis and outcome is a relevant medical research challenge. Provided that such methods are to be used in a clinical environment (ICU), it requires prediction methods that are robust, accurate and readily interpretable. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 12. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Introduction The medical management of sepsis and the study of its prognosis and outcome is a relevant medical research challenge. Provided that such methods are to be used in a clinical environment (ICU), it requires prediction methods that are robust, accurate and readily interpretable. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 13. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Thesis Objectives Thesis Objectives Improve our knowledge about the incidence of Sepsis. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 14. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Thesis Objectives Thesis Objectives Improve our knowledge about the incidence of Sepsis. Improve our understanding about Sepsis and its protective factors. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 15. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Thesis Objectives Thesis Objectives Improve our knowledge about the incidence of Sepsis. Improve our understanding about Sepsis and its protective factors. Study of the evolution of Sepsis into more critical states with respect to several management/measurement variables. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 16. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Thesis Objectives Thesis Objectives Improve our knowledge about the incidence of Sepsis. Improve our understanding about Sepsis and its protective factors. Study of the evolution of Sepsis into more critical states with respect to several management/measurement variables. Develop a system that could provide prognostic indicators of mortality (RoD) that can be used in the ICU (acc., sens, spec), if possible, at the onset of the pathology. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 17. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Contents 1 Introduction Introduction Thesis Objectives 2 Database Description Dataset Available Data 3 State of the Art 4 AI Methods Applied 5 An AI Tour of Sepsis Incidence of Sepsis Protection against Sepsis Mortality Prediction with a Latent Data Representation Risk of Death Assessment from Observed Data 6 Conclusions Incidence of Sepsis and Coadjuvant Factors Protective Effects of Statins Mortality Predictors and Their Accuracy Contributions Outline for Future Work Publications Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 18. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Dataset Available Datasets A prospective observational cohort study of adult patients with severe sepsis was conducted at the Critical Care Department of the Vall d’ Hebron University Hospital (Barcelona, Spain). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 19. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Dataset Available Datasets A prospective observational cohort study of adult patients with severe sepsis was conducted at the Critical Care Department of the Vall d’ Hebron University Hospital (Barcelona, Spain). Data from 750 and 354 patients with severe sepsis was collected in this ICU between June, 2007 and December, 2010. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 20. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Dataset Available Datasets A prospective observational cohort study of adult patients with severe sepsis was conducted at the Critical Care Department of the Vall d’ Hebron University Hospital (Barcelona, Spain). Data from 750 and 354 patients with severe sepsis was collected in this ICU between June, 2007 and December, 2010. 55% of cases correspond to ‘medical’ sepsis. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 21. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Dataset Available Datasets A prospective observational cohort study of adult patients with severe sepsis was conducted at the Critical Care Department of the Vall d’ Hebron University Hospital (Barcelona, Spain). Data from 750 and 354 patients with severe sepsis was collected in this ICU between June, 2007 and December, 2010. 55% of cases correspond to ‘medical’ sepsis. The mean age of the patients in the database was 57.08 (with standard deviation ±16.65) years. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 22. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Dataset Available Datasets A prospective observational cohort study of adult patients with severe sepsis was conducted at the Critical Care Department of the Vall d’ Hebron University Hospital (Barcelona, Spain). Data from 750 and 354 patients with severe sepsis was collected in this ICU between June, 2007 and December, 2010. 55% of cases correspond to ‘medical’ sepsis. The mean age of the patients in the database was 57.08 (with standard deviation ±16.65) years. 40% of patients were female. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 23. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Available Data Available Attributes The collected data show the worst values for all variables during the first 24 hours of evolution of Severe Sepsis. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 24. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Available Data Available Attributes The collected data show the worst values for all variables during the first 24 hours of evolution of Severe Sepsis. Organ dysfunction was evaluated by means of the SOFA score system, which objectively measures organ dysfunction for 6 organs/systems. Cardiovascular (CV) 2.86 (1.62) Haematologic (HAEMATO) 0.78 (1.14) Respiratory (RESP) 2.31 (1.15) Global SOFA score 7.94 (3.86) Central Nerv. Sys. (CNS) 0.48 (1.00) Dysf. Organs 1.68 (1.09) Hepatic (HEPA) 0.48 (0.92) Failure Organs 1.51 (1.02) Renal (REN) 1.06 (1.20) Total Dysf. Organs 3.18 (1.32) Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 25. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Available Data Available Attributes The collected data show the worst values for all variables during the first 24 hours of evolution of Severe Sepsis. Organ dysfunction was evaluated by means of the SOFA score system, which objectively measures organ dysfunction for 6 organs/systems. Cardiovascular (CV) 2.86 (1.62) Haematologic (HAEMATO) 0.78 (1.14) Respiratory (RESP) 2.31 (1.15) Global SOFA score 7.94 (3.86) Central Nerv. Sys. (CNS) 0.48 (1.00) Dysf. Organs 1.68 (1.09) Hepatic (HEPA) 0.48 (0.92) Failure Organs 1.51 (1.02) Renal (REN) 1.06 (1.20) Total Dysf. Organs 3.18 (1.32) Severity was evaluated by means of the APACHE II score, which was 23.03 ± 9.62 for the population under study. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 26. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Available Data Available Attributes The collected data show the worst values for all variables during the first 24 hours of evolution of Severe Sepsis. Organ dysfunction was evaluated by means of the SOFA score system, which objectively measures organ dysfunction for 6 organs/systems. Cardiovascular (CV) 2.86 (1.62) Haematologic (HAEMATO) 0.78 (1.14) Respiratory (RESP) 2.31 (1.15) Global SOFA score 7.94 (3.86) Central Nerv. Sys. (CNS) 0.48 (1.00) Dysf. Organs 1.68 (1.09) Hepatic (HEPA) 0.48 (0.92) Failure Organs 1.51 (1.02) Renal (REN) 1.06 (1.20) Total Dysf. Organs 3.18 (1.32) Severity was evaluated by means of the APACHE II score, which was 23.03 ± 9.62 for the population under study. The mortality rate intra-ICU for our study population was 26.32%. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 27. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Available Data Available Attributes List of attributes used in this study: Age Haemocultures 6h Dysfunctional Organs for Gender SOFA 1-2 Antibiotics 6h Sepsis Focus Dysfunctional Organs for Volume 6h SOFA 3-4 O2 Central Venous Saturation Germ Class Total Number of 6h Polimicrobial Infection Dysfunctional Organs Haematocrit 6h Base Pathology Mechanical Ventilation Transfusions 6h Cardiovascular SOFA Score Oxygenation Index Dobutamine 6h Respiratory SOFA Score PaO2 /FiO2 Surviving Sepsis Campaign CNS SOFA score Vasoactive Drugs Bundles 24h Hepatic SOFA Score Platelet Count Glycaemia 24h Renal SOFA Score APACHE II Score PPlateau Haematologic SOFA Score Surviving Sepsis Campaign Worst Lactate Total SOFA Score Bundles 6h O2 Central Venous Saturation Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 28. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Contents 1 Introduction Introduction Thesis Objectives 2 Database Description Dataset Available Data 3 State of the Art 4 AI Methods Applied 5 An AI Tour of Sepsis Incidence of Sepsis Protection against Sepsis Mortality Prediction with a Latent Data Representation Risk of Death Assessment from Observed Data 6 Conclusions Incidence of Sepsis and Coadjuvant Factors Protective Effects of Statins Mortality Predictors and Their Accuracy Contributions Outline for Future Work Publications Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 29. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Quantitative Analysis of the Pathophysiology of Sepsis Reference Objective Model Variables Rackow et al. 1991 Severity ODE B. Flow MAP Art. Res React. Hyperemia Kimberly et al. 2000 Shock Autonomic HR Coupling BP Ross et al. 1998 Inflam. ODE Pathogen Shock ANN (RBF) Cell Damage Immuno. Resp. Othman et al. 2003 Shock Gastric Impedance and 2004 Mucosa Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 30. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Quantitative Analysis of the Prognosis of Sepsis (Medical Practice) Reference Objective Model Variables Knaus et al. 1985 Eval. LR SOFA MODS APACHE II LODS Adler et al. 2008 Sepsis LR SAPS 3 Paetz et al. 2001 Shock RBF SBP Thrombocit. Lact. Savkin et al. 2010 Sepsis SVM Culture RR, HR Lact. White cell Brause et al. 2002 Sepsis HMM Sep. States Full Obs. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 31. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Contents 1 Introduction Introduction Thesis Objectives 2 Database Description Dataset Available Data 3 State of the Art 4 AI Methods Applied 5 An AI Tour of Sepsis Incidence of Sepsis Protection against Sepsis Mortality Prediction with a Latent Data Representation Risk of Death Assessment from Observed Data 6 Conclusions Incidence of Sepsis and Coadjuvant Factors Protective Effects of Statins Mortality Predictors and Their Accuracy Contributions Outline for Future Work Publications Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 32. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions AI Methods Applied Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 33. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions AI Methods Applied Graphical models from Algebraic Statistics chapter 6. CART chapter 6. Logistic regression over latent factors chapter 7. Shrinkage methods chapter 8. [Hastie] Support Vector Machines chapter 8 [Sch¨lkopf, Christianini]. o Generative kernels chapter 8. Simplified Fisher kernel. Quotient Basis Kernel. Kernels based on the JS metric. Relevance Vector Machines chapter 8 [Tipping, Fletcher]. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 34. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Shrinkage methods M Linear Regression: minw Lλ (w, y, x) = i=1 (yi − g (xi ))2 , Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 35. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Shrinkage methods M Linear Regression: minw Lλ (w, y, x) = i=1 (yi − g (xi ))2 , Ridge regression: M minw Lλ (w, y, x) = minw λ w 2 + i=1 (yi − g (xi ))2 , Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 36. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Shrinkage methods M Linear Regression: minw Lλ (w, y, x) = i=1 (yi − g (xi ))2 , Ridge regression: M minw Lλ (w, y, x) = minw λ w 2 + i=1 (yi − g (xi ))2 , Lasso (L1 loss function): M minw Lλ (w, y, x) = minw λ|w|1 + i=1 (yi − g (xi ))2 , Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 37. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Shrinkage methods M Linear Regression: minw Lλ (w, y, x) = i=1 (yi − g (xi ))2 , Ridge regression: M minw Lλ (w, y, x) = minw λ w 2 + i=1 (yi − g (xi ))2 , Lasso (L1 loss function): M minw Lλ (w, y, x) = minw λ|w|1 + i=1 (yi − g (xi ))2 , Relevance vector machine (SVM with priors) [Tipping, Fletcher]. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 38. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Why generative kernels? Selection of kernel function for a given problem is not trivial. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 39. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Why generative kernels? Selection of kernel function for a given problem is not trivial. One normally must have good insight about the problem at hand. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 40. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Why generative kernels? Selection of kernel function for a given problem is not trivial. One normally must have good insight about the problem at hand. Mapping over higher dimensions simplifies the problem but computational cost grows with ∼ d 3 . Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 41. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Why generative kernels? Selection of kernel function for a given problem is not trivial. One normally must have good insight about the problem at hand. Mapping over higher dimensions simplifies the problem but computational cost grows with ∼ d 3 . Solution: exploit the statistical structure of the data to build the kernel! Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 42. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Why generative kernels? Selection of kernel function for a given problem is not trivial. One normally must have good insight about the problem at hand. Mapping over higher dimensions simplifies the problem but computational cost grows with ∼ d 3 . Solution: exploit the statistical structure of the data to build the kernel! Requirement: pdf must be a regular exponential family. This requirement is fulfilled by the dataset of this Ph.D.! Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 43. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Generative kernels We propose three generative approaches: Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 44. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Generative kernels We propose three generative approaches: exploit the algebraic structure of the dataset (Quotient Basis). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 45. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Generative kernels We propose three generative approaches: exploit the algebraic structure of the dataset (Quotient Basis). exploit the momentum generation properties of regular exponential families (i.e. the second derivative of the log-Laplace function G corresponds to the covariance) to calculate the Fisher kernel. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 46. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Generative kernels We propose three generative approaches: exploit the algebraic structure of the dataset (Quotient Basis). exploit the momentum generation properties of regular exponential families (i.e. the second derivative of the log-Laplace function G corresponds to the covariance) to calculate the Fisher kernel. use the dual of the log-Laplace function, which corresponds to the negative entropy, and a metric (Jensen-Shannon) to build the kernels through application of the properties for pd and nd functions (i.e. centering, inversion and exponentiation). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 47. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Quotient Basis Kernel Let A be a set of n unique points A = {a1 , . . . , an } and τ a term ordering. A Gr¨bner basis of A, G = g1 , . . . , gt , is a Gr¨bner basis o o of I (A). Therefore, the points in A can be presented as the set of solutions of   g1 (a) = 0  g2 (a) = 0    ··· gt (a) = 0  Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 48. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Quotient Basis Kernel Let A, be a set of n × s unique support points A = {a1 , . . . , an } and τ a term ordering. A monomial basis of the set of polynomial functions over A is ESTτ = {x α : x α ∈ LT(g ) : g ∈ I (A) } / This means that ESTτ comprises the elements x α that are not divisible by any of the leading terms of the elements of the Gr¨bner o basis of I (A). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 49. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Quotient Basis Kernel Let τ be a term ordering and let us consider an ordering over the support points A = {a1 , . . . , an }. We call design matrix (i.e. ESTτ evaluated in A) the following n × c matrix Z = [ESTτ ] A where c is the cardinality of ESTτ and n is the number of support points. The covariance of the design matrix of ESTτ , which is a kernel, is the QBK. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 50. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Simplified Fisher Kernel Let P = (P|η ∈ N) be a regular exponential family with canonical sufficient statistic T . Then the log likelihood function takes the form l(η|T ) = n(η t T − G (η)) The score function is the gradient ∂l(η|T ) ∂ U(T , η) = = nT − G (η) ∂η ∂η So the simplified Fisher Kernel is: k(x, z) = U(Tx , η)U(Tz , η)t Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 51. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Kernels based on the Jensen Shannon Metric Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 52. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Kernels based on the Jensen Shannon Metric Let P = (P|η ∈ N) be a regular exponential family with canonical sufficient statistic T . Then the log likelihood function takes the form l(η|T ) = n(η t T − G (η)) This function accepts a convex - conjugate (Legendre Dual) of the form l(γ|T ) = n(γ t T − F (γ)) In our case, the dual F is the negative log-entropy function. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 53. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Kernels based on the Jensen Shannon Metric F (γ1 ) + F (γ2 ) γ1 + γ2 JS(γ1 , γ2 ) = −F . 2 2 Centred kernel: φ(x, y ) = JS(x, x0 ) + JS(y , x0 ) − JS(x, y ) − JS(x0 , x0 ). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 54. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Kernels based on the Jensen Shannon Metric F (γ1 ) + F (γ2 ) γ1 + γ2 JS(γ1 , γ2 ) = −F . 2 2 Centred kernel: φ(x, y ) = JS(x, x0 ) + JS(y , x0 ) − JS(x, y ) − JS(x0 , x0 ). Exponentiated kernel: φ(x, y ) = exp(−tJS(x, y )) ∀t > 0. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 55. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Kernels based on the Jensen Shannon Metric F (γ1 ) + F (γ2 ) γ1 + γ2 JS(γ1 , γ2 ) = −F . 2 2 Centred kernel: φ(x, y ) = JS(x, x0 ) + JS(y , x0 ) − JS(x, y ) − JS(x0 , x0 ). Exponentiated kernel: φ(x, y ) = exp(−tJS(x, y )) ∀t > 0. 1 Inverse kernel: φ(x, y ) = t+JS(x,y ) ∀t > 0. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 56. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Contents 1 Introduction Introduction Thesis Objectives 2 Database Description Dataset Available Data 3 State of the Art 4 AI Methods Applied 5 An AI Tour of Sepsis Incidence of Sepsis Protection against Sepsis Mortality Prediction with a Latent Data Representation Risk of Death Assessment from Observed Data 6 Conclusions Incidence of Sepsis and Coadjuvant Factors Protective Effects of Statins Mortality Predictors and Their Accuracy Contributions Outline for Future Work Publications Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 57. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Route map Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 58. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis SOFA Score and Sepsis Study based on the basal SOFA scale. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 59. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis SOFA Score and Sepsis Study based on the basal SOFA scale. A SOFA≥2 is demonstrative of MODS while a SOFA-CV > 2 is demonstrative of Septic Shock. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 60. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis SOFA Score and Sepsis Study based on the basal SOFA scale. A SOFA≥2 is demonstrative of MODS while a SOFA-CV > 2 is demonstrative of Septic Shock. By the definition of SOFA it is obvious that Severe Sepsis, Shock and MODS are dependent on each other (i.e. all imply organ dysfunction). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 61. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis Bayes Network for Sepsis node X1 corresponds to the X1 X2 unobserved number of Severe Sepsis. node X2 corresponds to Septic Shock. node X3 corresponds to MODS. X3 X4 node X4 corresponds to ICU result. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 62. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis Incidence of Sepsis Bayes Network yields an incidence of 164 cases / 100000 hab (i.e. 164 vs 118 in our database). The incidence reported in Madrid is 141 cases / 100000 hab. and Castilla Le´n is 250 cases / 100000 hab. o The discrepancy between these figures lies mainly in the study design (haemocultures at admission vs. people being treated for Sepsis). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 63. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Statins Statins is a common drug for the treatment of high cholesterol levels. Beyond their hypolipemic properties, they also exercise anti-inflammatory, immunomodulator and antioxidant actions. Statins modulate vasoreactivity in the coagulation system. Recent studies suggest that they present beneficial effects for infection prevention and treatment, impacting the ICU outcome. These results are still controversial in the medical community. In our dataset with 750 patients, 106 (i.e. 14.13%) received preadmission treatment with statins. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 64. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Hypothesis In our dataset with 750 patients, 106 (i.e. 14.13%) received preadmission treatment with statins. Do statins play a protective role in the prognosis of Sepsis? Does this role depend on the Sepsis continuum (MODS and Septic Shock)? Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 65. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Models of Conditional Independence We aim to find the relation between the administration of statin drugs prior to ICU admission and the mortality rate in Severe Sepsis patients. Thus, we test the null hypothesis that the ICU outcome is independent of the preadmission use of statins for given APACHE II and SOFA scores. Ho : Ho : {X1 } ⊥ {X4 }|{X2 }, {X3 }. ⊥ (1) where {X1 } is the ICU outcome, {X4 } the preadmission use of statins, {X3 } the SOFA score, and {X2 } the APACHE II score. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 66. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Models of Conditional Independence We have two options based on Algebraic Models to reject Ho : study the rank of the minors of our observation matrix (tedious for large datasets). Algebraic Interpolation (more fun): Assume that our observed dataset are the zeroes of polynomial set of equations (and an order on the variables). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 67. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Models of Conditional Independence We have two options based on Algebraic Models to reject Ho : study the rank of the minors of our observation matrix (tedious for large datasets). Algebraic Interpolation (more fun): Assume that our observed dataset are the zeroes of polynomial set of equations (and an order on the variables). On a first level of abstraction there is a Polynomial Ideal associated to this set of equations (vanishing ideal). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 68. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Models of Conditional Independence We have two options based on Algebraic Models to reject Ho : study the rank of the minors of our observation matrix (tedious for large datasets). Algebraic Interpolation (more fun): Assume that our observed dataset are the zeroes of polynomial set of equations (and an order on the variables). On a first level of abstraction there is a Polynomial Ideal associated to this set of equations (vanishing ideal). On a second level of abstraction, this ideal is generated by a finite basis (Hilbert basis theorem). This is a Gr¨bner basis. o Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 69. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Models of Conditional Independence We have two options based on Algebraic Models to reject Ho : study the rank of the minors of our observation matrix (tedious for large datasets). Algebraic Interpolation (more fun): Assume that our observed dataset are the zeroes of polynomial set of equations (and an order on the variables). On a first level of abstraction there is a Polynomial Ideal associated to this set of equations (vanishing ideal). On a second level of abstraction, this ideal is generated by a finite basis (Hilbert basis theorem). This is a Gr¨bner basis. o On a third level of abstraction, the terms of the ordering that are not divided by the leading terms of the Gr¨bner basis are o defined as a Quotient Basis. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 70. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Algebraic Interpolation The resulting products between terms of the Quotient Basis Statins SOFA APACHE II 1 1 1 show the 2 1 1 interaction/dependence 1 2 1 between terms. 2 2 1 1 1 2 By the Hammersley - Clifford 2 1 2 theorem (factorisation of the 1 2 2 terms of the Quotient Basis) 2 2 2 show that there is a Graphical Model associated to the vanishing ideal. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 71. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Algebraic Interpolation Ordering: x1 x2 x3 x1 x2 x1 x3 x1 x2 x1 x2 x3 x2 x3 1 Ideal I = 2 2 2 x3 − 3x3 + 2, x2 − 3x2 + 2, x1 − 3x1 + 2 . Gr¨bner G = o 2 − 3x + 2, x 2 − 3x + 2, x 2 − 3x + 2 . x3 3 2 2 1 1 Quotient Basis x3 x4 B = {1, x3 , x2 , x2 x3 , x1 , x1 x3 , x1 x2 , x1 x2 x3 }. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 72. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Algebraic Interpolation P(x4 ) = η7 x1 x2 x3 + η6 x1 x2 + η5 x1 x3 − η4 x2 x3 − η3 x1 + η2 x2 + η1 x3 + η0 Solving for {x1 , x2 , x3 } by substitution and also knowing that η0 = 1 − 7 ηi yields the interpolation polynomial i=1 P(x4 ) = −1/50x1 x2 x3 + 3/100x1 x2 + 9/100x1 x3 − 3/25x2 x3 − 21/100x1 + 27/100x2 + 8/25x3 + 7/25 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 73. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Algebraic Interpolation Statins SOFA APACHE II Result=1 Result=2 1 1 1 0.64 0.36 2 1 1 0.53 0.47 1 2 1 0.80 0.20 2 2 1 0.70 0.30 1 1 2 0.91 0.09 2 1 2 0.87 0.13 1 2 2 0.93 0.07 2 2 2 0.88 0.12 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 74. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Algebraic Interpolation Statins SOFA APACHE II Result=1 Result=2 1 1 1 0.64 0.36 2 1 1 0.53 0.47 1 2 1 0.80 0.20 2 2 1 0.70 0.30 1 1 2 0.91 0.09 2 1 2 0.87 0.13 1 2 2 0.93 0.07 2 2 2 0.88 0.12 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 75. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Protection against Sepsis Analysis with Decision Trees Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 76. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Factor Analysis Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 77. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Factor Analysis A Factor Analysis (FA) model concerns a Gaussian hidden variable model with d observed variables Xi and k hidden variables Yi . FA assumes (X , Y ) follows a joint multivariate normal distribution with positive definite covariance matrix. What is sought is a model of the form x − µ = Λ + . Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 78. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Factor Analysis The FA model Fd,k is the family of multivariate normal distributions Nd (µ, Σ) on Rd whose mean vector µ is an arbitrary vector in Rd and whose covariance matrix Σ lies in the (non-convex) cone Fd,k = {Ω + ΛΛt ∈ Rd×d : Ω 0 diagonal, Λ ∈ Rd×k } = {Ω + Ψ ∈ Rd×d : Ω 0 diagonal, Ψ 0 symmetric, rank (Ψ) ≤ k}. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 79. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Factor Analysis Factor 1: cardiovascular function, cardiovascular SOFA score and vasoactive drugs. Factor 2: haematologic function (haematologic SOFA score and platelet count). Factor 3: respiratory function, Respiratory SOFA score and PaO2 /FiO2 ratio. Factor 4: use of mechanical ventilation and PPlateau. Factor 5: 24h SSC bundles and glycaemic indices. Factor 6: micro-organism producing the Sepsis and whether this sepsis polimicrobial or not. Factor 7: renal function measured by the SOFA score and total SOFA score. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 80. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Factor Analysis Factor 8: antibiotics and haemocultures during the first 6h of ICU stay. Factor 9: number of organs in dysfunction. Factor 10: hepatic function measured by the SOFA score. Factor 11: CNS function and number of organs in dysfunction. Factor 12: loci of Sepsis and poly-microbial. Factor 13: APACHE II score and worst lactate levels. Factor 14: Total number of organs in dysfunction. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 81. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Logistic Regression Log-odd ratio of a Binomial distribution is p log = β0 + βX. (2) 1−p Where β0 is the intercept and β is vector of logistic regression coefficients estimated through ML with a generalised linear model. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 82. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Experiment setting 10-Fold cross-validation. LR over Latent Factors (backward feature selection). Subset selection of the Original Variables (backward feature selection). Comparison with RoD formula based on the APACHE II score ROD ln 1−ROD = −3.517 + 0.146 · A + . Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 83. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Logistic Regression over Latent Factors β Coeff MAX MIN Z-score Intercept 1.22 1.53 .87 7.11 F4 -0.54 -0.23 -0.86 -3.38 F10 -0.69 -0.38 -1.05 -4.26 F9 -0.51 -0.21 -0.81 -3.36 F13 -0.49 -0.24 -0.74 -3.80 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 84. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Logistic Regression over Latent Factors β Coeff MAX MIN Z-score Intercept 4.20 3.11 5.29 7.56 APACHE II -0.08 -0.13 -0.04 -3.77 Worst Lact. -0.25 -0.38 -0.11 -3.63 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 85. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Mortality Prediction with a Latent Data Representation Results Method AUC Error Rate Sens. Spec. Dataset LR-FA 0.78 0.24 0.65 0.80 FA LR 0.75 0.30 0.64 0.72 LR APACHE II 0.70 0.28 0.82 0.55 N/A Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 86. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data RoD with RVM The model performance was evaluated by means of 10-Fold Cross-Validation. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 87. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data RoD with RVM The model performance was evaluated by means of 10-Fold Cross-Validation. The RVM yielded an accuracy of mortality prediction of 0.86; a prediction error of 0.18; a sensitivity of 0.67; and a specificity of 0.87. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 88. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data RoD with RVM The model performance was evaluated by means of 10-Fold Cross-Validation. The RVM yielded an accuracy of mortality prediction of 0.86; a prediction error of 0.18; a sensitivity of 0.67; and a specificity of 0.87. RVM selected the following attributes (corresponding to weights): Number of dysfunctional organs (w1 = −0.039) Mechanical Ventilation (w2 = −0.101) APACHE II (w3 = −0.337) Resuscitation Bundles (6h) (w4 = 0.037) Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 89. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data The coefficients corresponding to the rest of attributes were set to values close to zero as part of the training process. This reduces the number of attributes (34 to just 4) and improves its interpretability. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 90. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data The coefficients corresponding to the rest of attributes were set to values close to zero as part of the training process. This reduces the number of attributes (34 to just 4) and improves its interpretability. The negative weights (number of dysfunctional organs, mechanical ventilation, APACHE II) are related to a higher mortality risk. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 91. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data The coefficients corresponding to the rest of attributes were set to values close to zero as part of the training process. This reduces the number of attributes (34 to just 4) and improves its interpretability. The negative weights (number of dysfunctional organs, mechanical ventilation, APACHE II) are related to a higher mortality risk. The SSC bundles (resuscitation bundles) are associated to a protective effect (i.e. antibiotics administration, performance of haemocultures, administration of volume and vasoactive drugs and so on). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 92. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data Comparison with other shrinkage methods The predictive ability of the RVM has also been compared to that of other well established shrinkage methods for regression. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 93. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data Comparison with other shrinkage methods The predictive ability of the RVM has also been compared to that of other well established shrinkage methods for regression. The selected attributes and coefficients for each method were: Lasso: Age (w1 = 0.007) Ridge Regression: Germ Class (w2 = 0.005) Logistic Regression with backward feature selection: Number of dysfunctional PaO2 /FiO2 (w3 = 0.001) organs for SOFA 3-4 APACHE II (w4 = −0.006) Intercept (w1 = 4.20) (w1 = −0.021) Number of Dysfunctional SvcO2 6h (w5 = −0.001) APACHE II (w2 = −0.127) Organs (w1 = −0.12) Haematocrit 6h Worst Lactate (w6 = 0.009) APACHE II (w2 = −0.08) (w3 = −0.126). Worst Lactate (w3 = −0.25) Worst Lactate (w7 = −0.023) SvcO2 (w8 = −0.006). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 94. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data The three shrinkage methods evaluated in this section agreed in detecting as prognostic factors the Severity measured by the APACHE II score and acidosis. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 95. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data The three shrinkage methods evaluated in this section agreed in detecting as prognostic factors the Severity measured by the APACHE II score and acidosis. Organ dysfunction and mechanical ventilation or other parameters related to it like PaO2 /FiO2 also play a role in the prognosis of Sepsis. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 96. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data The three shrinkage methods evaluated in this section agreed in detecting as prognostic factors the Severity measured by the APACHE II score and acidosis. Organ dysfunction and mechanical ventilation or other parameters related to it like PaO2 /FiO2 also play a role in the prognosis of Sepsis. The accuracy of each method was the following: Method AUC Error Rate Sens. Spec. RVM 0.86 0.18 0.67 0.87 Logistic 0.75 0.30 0.64 0.72 Ridge 0.70 0.25 0.63 0.79 Lasso 0.70 0.32 0.67 0.68 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 97. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data RoD with Generative Kernels - QBK - x1 is the Number of Dysfunctional Organs as measured by the SOFA Score. x2 corresponds to Mechanical Ventilation (yes/no). x3 corresponds to Severity as Measured by the APACHE II Score. x4 corresponds to the SSC Resuscitation Bundles (i.e. administration of antibiotics, performance of haemocultures and so on). This is also a binary variable. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 98. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data RoD with Generative Kernels - QBK -     1, x4 , x3 , x3 x4 ,        x2 , x2 x4 , x2 x3 , x2 x3 x4 ,       2 2 2 2 x2 , x2 x4 , x2 x3 , x2 x3 x4 ,      3 3 3 3      x2 , x2 x4 , x2 x3 , x2 x3 x4 ,    4, x 4x , x 4x , x 4x x ,   x2 2 4 2 3 2 3 4       ESTτ = 5 5 6 x2 , x2 x4 , x2 , x1 , x1 x4 , x1 x3 , x1 x3 x4 , x1 x2 ,            2 x1 x2 x4 , x1 x2 x3 , x1 x2 x3 x4 , x1 x2 ,         2 2 2 3 x1 x2 x4 , x1 x2 x3 , x1 x2 x3 x4 , x1 x2 ,         3x , x x 3x , x x 3x x , x x 4, x1 x2 4 1 2 3 1 2 3 4 1 2      4 4 5    x1 x2 x4 , x1 x2 x3 , x1 x2  Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 99. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data RoD with Generative Kernels We have used Matlab’s Support Vector Machine QP solver implemented in the BioInformatics and Optimization Toolboxes. We have also used 10-fold cross validation to evaluate the classification performance for the different kernels. A grid search yielded the appropriate values for C parameters for each Kernel. More particularly, Quotient Basis and Fisher C = 1. Generative Kernels C = 10. Also the parameter t for the Exponential and Inverse Kernels was set to 2. Gaussian, Linear and Polynomial Kernels C = 10. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 100. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Risk of Death Assessment from Observed Data RoD with Generative Kernels Kernel AUC Error Rate Sens. Spec. CPU time [s] Quotient 0.89 0.18 0.70 0.86 1.45 Fisher 0.76 0.18 0.68 0.86 1.39 Exponential 0.75 0.21 0.70 0.82 1.64 Inverse 0.62 0.22 0.70 0.82 1.68 Centred 0.75 0.21 0.70 0.82 1.99 Gaussian 0.83 0.24 0.65 0.81 1.56 Poly (order 2) 0.69 0.28 0.71 0.76 1.59 Linear 0.62 0.26 0.62 0.78 1.35 Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 101. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Contents 1 Introduction Introduction Thesis Objectives 2 Database Description Dataset Available Data 3 State of the Art 4 AI Methods Applied 5 An AI Tour of Sepsis Incidence of Sepsis Protection against Sepsis Mortality Prediction with a Latent Data Representation Risk of Death Assessment from Observed Data 6 Conclusions Incidence of Sepsis and Coadjuvant Factors Protective Effects of Statins Mortality Predictors and Their Accuracy Contributions Outline for Future Work Publications Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 102. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis and Coadjuvant Factors Incidence of Sepsis and Coadjutant Factors SIRS pathology has proven to be a very sensitive indicator of Sepsis but also one of poor specificity. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 103. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis and Coadjuvant Factors Incidence of Sepsis and Coadjutant Factors SIRS pathology has proven to be a very sensitive indicator of Sepsis but also one of poor specificity. Castilla y Le´n report an incidence of 250 cases /100.000 hab. o and Madrid 141 cases/100.000 hab. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 104. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis and Coadjuvant Factors Incidence of Sepsis and Coadjutant Factors SIRS pathology has proven to be a very sensitive indicator of Sepsis but also one of poor specificity. Castilla y Le´n report an incidence of 250 cases /100.000 hab. o and Madrid 141 cases/100.000 hab. Our Bayes Network yielded an estimation of 164 cases / 100.000 hab (i.e. 164 vs 118 in our database). Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit
  • 105. Introduction Database Description State of the Art AI Methods Applied An AI Tour of Sepsis Conclusions Incidence of Sepsis and Coadjuvant Factors Incidence of Sepsis and Coadjutant Factors SIRS pathology has proven to be a very sensitive indicator of Sepsis but also one of poor specificity. Castilla y Le´n report an incidence of 250 cases /100.000 hab. o and Madrid 141 cases/100.000 hab. Our Bayes Network yielded an estimation of 164 cases / 100.000 hab (i.e. 164 vs 118 in our database). There are different comorbidities and coadjuvant factors that clearly play a role in Sepsis. Vicent J. Ribas LSI - SOCO Technical University of Catalonia (UPC) Barcelona On the Intelligent Management of Sepsis in the Intensive Care Unit