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University of Agricultural Sciences and
Veterinary Medicine Cluj-Napoca
San Cristobal de la Laguna, June 27th 2014
Location
4833 km from
Universidad
La Laguna
Doru PAMFIL
visionary
Rector
Domain: Life Sciences
Over 600 staff, 5500 students
Scientific and professional education
Budget:
€ 2.126.820 (gouvernmental resources) +
own resources (up to over € 18.000.000)
University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
Higher Education Institution and Research centre
Two pillars:
–Education: BSc 4y, MSc 2y, PhD 3y
–Research: Institute of Life Sciences
11 research centers, 25 research laboratories
Faculties:
–Faculty of Agriculture
–Faculty of Horticulture
–Faculty of Animal Science and Biotechnologies
–Faculty of Veterinary Medicine
–Faculty of Food Science and Technology
University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
Bachelor Programs (BSc) - 17
–Romanian students + international students
(incoming)
Master Program (MSc) - 16
–Romanian, English, French
PhD Program (collaborations: bilateral diploma
award)
–Romanian, English, French
University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
Atractive university
• Students from more than 14 countries
• Strongest international orientation
• Dynamic, open to changes and to explore new
education blending methods
• Biggest University for Life Sciences in Romania
• Top publication index in our field in Romania
University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
Faculty of Food Science and Technology
FOOD
TECHNOLOGY
FOOD
ENGINEERING
SAFETY AND
QUALITY
CONTROL
FOOD
SCIENCE
BIOCHEMISTRY
FOOD
CHEMISTRY
NUTRITION
FOOD
TOXICOLOGY
Faculty of Food Science and Technology
VISION
Be the recognized leader in providing integrated
life science solutions for local and international
customers.
MISSION
to produce and disseminate scientific
knowledge
to develop innovations and know-how for the
benefit of society
Faculty of Food Science and Technology
CAPABILITIES:
Laboratory of Food Quality and Safety Testing
Laboratory of Food Quality Control and
Adulteration
Laboratory of Molecular Nutrition and
Proteomics
Research laboratories
Equipments
GC-FID, LC-MS, HPLC, FT-FIR & UV-VIS Spectrometry
cDNA gene expression,
protein expression profile associated with bioactive compounds
Faculty of Food Science and Technology
3 BSc Programs
• Agro-Products Processing Technology
• Food Control and Expertise
• Food Engineering
4 MSc Programs
• Food Quality Management
• Processing Systems and Food Quality Control
• Food Safety and Consumer Protection
• GASTRONOMY, NUTRITION AND DIETETICS (in collaboration
with University of Medicine and Pharmacy of Cluj-Napoca)
Disciplines Expertise and Competences Capabilities
Food Science food analysis and
characterisation; food
ingredient interaction;
Analysis of the chemical and
physical properties of
Food, metabolomics
Food Law food regulation International research
expertise
Food Production sustainable food production Novel feeding strategies
Food Consumer consumer attitudes, beliefs and
perceptions of food and
health
Novel quantitative
methodologies
Food Nutrition cellular and molecular nutrition,
nutrigenomics, nutriproteomics
Genomic, transcriptomic,
proteomic platforms
Biosystems
Engineering
food chain integrity, food process
engineering
Traditional processing
equipment for the meat ,
dairy, beer, bread and bakery
industries
Food Safety identification and detection
protocols for a range of food
contaminants and food-borne
Analytical methods,
microbiology methods
Pilot plants
Pilot plant for beer and wine
Assist. Prof. dr. eng. Elena Mudura
Pilot plants
Pilot plant for bakery products
Assist. Prof. dr. eng. Adriana Paucean
Pilot plants
Pilot plant for dairy products
Assist. Prof. dr. eng. Mirela Jimborean
Main research topic field
• In vitro, in vivo and in silico study
– Cancer (prostate cancer, breast cancer) –
• conducting studies on treatment/prevention of BAC (animal/vegetal) –
(AxonArray  transcriptomics, microRNA, protein array, antibody array)
 Design of innovative food with bioactive anticancer compounds
(colllaboration with prof H Kloker)
– Food proteins/peptides
• Milk proteins and peptide with antihypertensive effect – design of
innovative yogurt
• Protein and peptide expression, purification and characterisation –
specific milk bioactive peptides and proteins (collaboration with BOKU,
prof D Haltrich)
• Microbiology – developing new biomarkers as bacterial membrane
proteins for food quality and control
– Endemic plants (RT-PCR, proteomics) (prof. Pamfil)
• Human nutrition studies
BIOMARKER DISCOVERY AND VALIDATION
Motivation  Biomarker Discovery and Validation
Overview of types of ‘omic’ biomarkers in terms of the informational complexity of the
models.
Azuaje F et al. Brief Bioinform 2009;10:367-377
© The Author 2009. Published by Oxford University Press. For Permissions, please email:
journals.permissions@oxfordjournals.org
IOCN 200822
Microarray experiments  differential gene-expression
Simplified workflow of the literature mining system at GlaxoSmithKline.
Agarwal P , Searls D B Brief Bioinform 2008;9:479-492
© The Author 2008. Published by Oxford University Press. For Permissions, please email:
journals.permissions@oxfordjournals.org
Omics Matching
Service
(gene&transcripts)-
exp model PCa
Overlap (potential
candidates)
MetaData pre-
processing
Diff Gene-Express
Statistics
Filtering Service
Filtering criteria: statistical
meaningfulness
parametrized & addnotation
(id, FC and p-Value )
List of meaningful genes
diff express in PCa
GO
Biological function
Molecular function
Sub-cellular localization
Filterare (pe
baza datelor
publice)
in silico
Validation
Yes! Where has
this biomarker
been reported?
No! This
gene/transcripts
has not been
reported as
biomarker before
Reported or not (search in
public DBs)? –
YES/NO
Who reported this protein
as biomarker (search
in public DB
-List of genes
(GenBank)
-Link differentially
expressed genes to
specific functional
classes
List of exp. identified
genes Public available
data
(ArrayExpr ess;
GEO;CIBEX)
ANOVA, MatArray, t-test; IPA,
PCA, etc
Computational
pipeline of
candidate
potential BMs
in PCa
Suharoschi, Muntean, Iuga. 2012
Protein function prediction using SDS-PAGE and
bioinformatic tools
National projects – lifescience
PN-II-RU-TE-2011-3-0154 -
Nanobiotechnology tools for
molecular medicine
applications: Nano- and
microstructures synthesis,
characterisation and in vitro
studies - Cristina Coman, PhD
PN-II-RU-PD-2012-3-0055
Brewer's yeast as biosorbent
for precious and heavy metals
biosorption from waste waters
- Andreea Stanila, PhD
Food and Health
Cluj-Napoca inter-university platform
Babes Bolyai University
University of Medicine and
Pharmacy of Cluj-Napoca
Technical University of Cluj-Napoca
Colaborations
We are on facebook
USAMV INTERNATIONAL SYMPOSIUM
Contact
Prof. Sevastita MUSTE
DEAN – Faculty of Food Science and Technology
sevastita.muste@usamvcluj.ro
Dr. Ramona SUHAROSCHI
ramona.suharoschi@usamvcluj.ro
3-5 Calea Manastur Str., 400372 Cluj-Napoca, ROMANIA
Mobile:+40 728104320
Tel: 0264-596384
Fax: 0264-593792
www.ingineriealimentara.usamvcluj.ro
I hope to see you in Cluj-Napoca
and in our university 

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2014 tenerife

  • 1. University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca San Cristobal de la Laguna, June 27th 2014
  • 4. Domain: Life Sciences Over 600 staff, 5500 students Scientific and professional education Budget: € 2.126.820 (gouvernmental resources) + own resources (up to over € 18.000.000) University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
  • 5. University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca Higher Education Institution and Research centre Two pillars: –Education: BSc 4y, MSc 2y, PhD 3y –Research: Institute of Life Sciences 11 research centers, 25 research laboratories
  • 6. Faculties: –Faculty of Agriculture –Faculty of Horticulture –Faculty of Animal Science and Biotechnologies –Faculty of Veterinary Medicine –Faculty of Food Science and Technology University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
  • 7. Bachelor Programs (BSc) - 17 –Romanian students + international students (incoming) Master Program (MSc) - 16 –Romanian, English, French PhD Program (collaborations: bilateral diploma award) –Romanian, English, French University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
  • 8. Atractive university • Students from more than 14 countries • Strongest international orientation • Dynamic, open to changes and to explore new education blending methods • Biggest University for Life Sciences in Romania • Top publication index in our field in Romania University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca
  • 9. Faculty of Food Science and Technology FOOD TECHNOLOGY FOOD ENGINEERING SAFETY AND QUALITY CONTROL FOOD SCIENCE BIOCHEMISTRY FOOD CHEMISTRY NUTRITION FOOD TOXICOLOGY
  • 10. Faculty of Food Science and Technology VISION Be the recognized leader in providing integrated life science solutions for local and international customers. MISSION to produce and disseminate scientific knowledge to develop innovations and know-how for the benefit of society
  • 11. Faculty of Food Science and Technology CAPABILITIES: Laboratory of Food Quality and Safety Testing Laboratory of Food Quality Control and Adulteration Laboratory of Molecular Nutrition and Proteomics
  • 12. Research laboratories Equipments GC-FID, LC-MS, HPLC, FT-FIR & UV-VIS Spectrometry cDNA gene expression, protein expression profile associated with bioactive compounds
  • 13. Faculty of Food Science and Technology 3 BSc Programs • Agro-Products Processing Technology • Food Control and Expertise • Food Engineering 4 MSc Programs • Food Quality Management • Processing Systems and Food Quality Control • Food Safety and Consumer Protection • GASTRONOMY, NUTRITION AND DIETETICS (in collaboration with University of Medicine and Pharmacy of Cluj-Napoca)
  • 14. Disciplines Expertise and Competences Capabilities Food Science food analysis and characterisation; food ingredient interaction; Analysis of the chemical and physical properties of Food, metabolomics Food Law food regulation International research expertise Food Production sustainable food production Novel feeding strategies Food Consumer consumer attitudes, beliefs and perceptions of food and health Novel quantitative methodologies Food Nutrition cellular and molecular nutrition, nutrigenomics, nutriproteomics Genomic, transcriptomic, proteomic platforms Biosystems Engineering food chain integrity, food process engineering Traditional processing equipment for the meat , dairy, beer, bread and bakery industries Food Safety identification and detection protocols for a range of food contaminants and food-borne Analytical methods, microbiology methods
  • 15. Pilot plants Pilot plant for beer and wine Assist. Prof. dr. eng. Elena Mudura
  • 16. Pilot plants Pilot plant for bakery products Assist. Prof. dr. eng. Adriana Paucean
  • 17. Pilot plants Pilot plant for dairy products Assist. Prof. dr. eng. Mirela Jimborean
  • 18. Main research topic field • In vitro, in vivo and in silico study – Cancer (prostate cancer, breast cancer) – • conducting studies on treatment/prevention of BAC (animal/vegetal) – (AxonArray  transcriptomics, microRNA, protein array, antibody array)  Design of innovative food with bioactive anticancer compounds (colllaboration with prof H Kloker) – Food proteins/peptides • Milk proteins and peptide with antihypertensive effect – design of innovative yogurt • Protein and peptide expression, purification and characterisation – specific milk bioactive peptides and proteins (collaboration with BOKU, prof D Haltrich) • Microbiology – developing new biomarkers as bacterial membrane proteins for food quality and control – Endemic plants (RT-PCR, proteomics) (prof. Pamfil) • Human nutrition studies
  • 20. Motivation  Biomarker Discovery and Validation
  • 21. Overview of types of ‘omic’ biomarkers in terms of the informational complexity of the models. Azuaje F et al. Brief Bioinform 2009;10:367-377 © The Author 2009. Published by Oxford University Press. For Permissions, please email: journals.permissions@oxfordjournals.org
  • 22. IOCN 200822 Microarray experiments  differential gene-expression
  • 23. Simplified workflow of the literature mining system at GlaxoSmithKline. Agarwal P , Searls D B Brief Bioinform 2008;9:479-492 © The Author 2008. Published by Oxford University Press. For Permissions, please email: journals.permissions@oxfordjournals.org
  • 24. Omics Matching Service (gene&transcripts)- exp model PCa Overlap (potential candidates) MetaData pre- processing Diff Gene-Express Statistics Filtering Service Filtering criteria: statistical meaningfulness parametrized & addnotation (id, FC and p-Value ) List of meaningful genes diff express in PCa GO Biological function Molecular function Sub-cellular localization Filterare (pe baza datelor publice) in silico Validation Yes! Where has this biomarker been reported? No! This gene/transcripts has not been reported as biomarker before Reported or not (search in public DBs)? – YES/NO Who reported this protein as biomarker (search in public DB -List of genes (GenBank) -Link differentially expressed genes to specific functional classes List of exp. identified genes Public available data (ArrayExpr ess; GEO;CIBEX) ANOVA, MatArray, t-test; IPA, PCA, etc Computational pipeline of candidate potential BMs in PCa Suharoschi, Muntean, Iuga. 2012
  • 25.
  • 26.
  • 27.
  • 28.
  • 29.
  • 30.
  • 31.
  • 32.
  • 33.
  • 34. Protein function prediction using SDS-PAGE and bioinformatic tools
  • 35. National projects – lifescience PN-II-RU-TE-2011-3-0154 - Nanobiotechnology tools for molecular medicine applications: Nano- and microstructures synthesis, characterisation and in vitro studies - Cristina Coman, PhD PN-II-RU-PD-2012-3-0055 Brewer's yeast as biosorbent for precious and heavy metals biosorption from waste waters - Andreea Stanila, PhD
  • 36. Food and Health Cluj-Napoca inter-university platform Babes Bolyai University University of Medicine and Pharmacy of Cluj-Napoca Technical University of Cluj-Napoca
  • 37.
  • 38.
  • 40. We are on facebook
  • 42. Contact Prof. Sevastita MUSTE DEAN – Faculty of Food Science and Technology sevastita.muste@usamvcluj.ro Dr. Ramona SUHAROSCHI ramona.suharoschi@usamvcluj.ro 3-5 Calea Manastur Str., 400372 Cluj-Napoca, ROMANIA Mobile:+40 728104320 Tel: 0264-596384 Fax: 0264-593792 www.ingineriealimentara.usamvcluj.ro
  • 43. I hope to see you in Cluj-Napoca and in our university 

Editor's Notes

  1. Overview of types of ‘omic’ biomarkers in terms of the informational complexity of the models.
  2. Simplified workflow of the literature mining system at GlaxoSmithKline. See text for a description.