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Overview
• A “3IA” institute, created on September 1st, 2019
• Academic partners
• Industry partners
☛Specificity: transverse project, federating several institutions within Paris
Our partners
3
Support from many actors of the ecosystem
4
And many others…
Ambition
• Be a recognized international leader in AI research and education, with true socio-economic impact
Strategy
• Excellence in research and education
• Individuals: bring together, attract and retain top talents
• Academic, industrial, and international partners
• A virtuous circle
• Core and interdisciplinary fundamental AI research
• Collaborative research with industry and applications
Collaborative research for
• New problems, new data, new ideas, Impact
Research ambition and strategy
6
Core of the institute: the chairs
• Selected by the international jury:
• 36 chairs
• 9 springboards
• Research on core AI, at the interface with other disciplines, related to applications
• Core research (12): Machine learning and optimization (3+2), Autonomous agents and multi-agent
systems (2), Network data management (4), Cognition (1),
• Integration (17): Computer vision (4), Data science (5+2), Natural language processing (2), Robotics (1),
Statistical physics (2), Agents, HCI, NLP, psychology (1)
• Applications (16): Biological imaging (2), Medical imaging (3+1), Clinical decision support (3+1),
Genomics (3+3)
• Open to SSH, ethics, and law
Applications fields
• Health, transport, environment, but not only
Outreach
• Focus on diversity
Main focus: Science
7
https://prairie-institute.fr/chairs/
Health focus
Medical Imaging
9
Leveraging the potential of different medical imaging modalities
Ninon Burgos, Junior Research scientist
CNRS,
Multimodal image analysis with deep
learning.
Stanley Durrleman, Senior Research
scientist INRIA,
Dir. ICM Centre for Neuroinformatics,
Disease modeling, neuroimagery.
Olivier Colliot, Senior Research scientist
CNRS,
ARAMIS Lab Director.
Multimodal image analysis,
Interpretable ML for neuroradiology.
Laure Fournier, MD-PhD UP,
AI for radiomic, mutliscale image analysis.
Challenges: “features” extraction, radiomic, multi-modale joint analysis
What for: early diagnosis, treatment response prognosis
Which diseases: neurodegenerative, onology
Biological Imaging
10
Model, analyze and process images of experimental biology
Challenges: neural networks modeling, statistical learning with few annotations ...
What for: deciphering how evolution optimizes decision making
Which diseases: oncology, Alzheimer’s disease
Jean-Baptiste Masson, Junior
Research scientist Pasteur,
Bayesian inference, neural
architecture and decision making.
Thomas Walter, Junior Research scientist
Mines ParisTech/Curie,
Microscopy, histopathology,
Computationnal phenotyping.
Decision support systems
11
Process, model, analyze clinical and real world data
Challenges: NLP on EHR, real world data,
What for: optimizing the patient pathway, evaluating responses, assembling cohorts for trials
Which diseases: cardiac failures, rare disease and chronic diseases
Stéphanie Allassonnière, Pr. UP,
PR assoc. Ecole Polytechnique
Bayesian modeling and stochastic
optimization for health data.
Anita Burgun, MD-PhD UP,
Medical informatics for personnalized
medicine.
Eloi Marijon, MD-PhD UP,
AI for cardiac dysfunction detection.
Raphael Porcher, MD-PhD UP
Personnalized therapies, causale inference.
Genomic
12
Leveraging the potential of different medical imaging modalities
Challenges: large scale analysis of heterogeneous data
What for: understanding the biology of cancer, classifying tumors, predicting therapeutic response,
proposing therapeutic targets
Chloé-A. Azencott Ass.
Prof. Mines, Founder of
Paris Women in ML,
Statistical genetics.
Emmanuel Barillot, Research
scientist, Curie institute,
Computational biology for
precision medicine.
Rayan Chikhi, CNRS,
ADN Sequencing for
Alzheimer’s disease.
Eric Letouzé, Junior research
scientist INSERM,
Cancer Genomics.
Andrei Zinovyev, Senior
research scientist Curie,
Multi-omics and single
cell.
• « Face Au Virus »: exploitation of data from Facebook, (https://www.psl.eu/initiative-scientifique-face-au-virus)
• M-PRESTO: Modèles PRédictifs multi-Echelles Spatio-TempOrels (multi-scale spatio-temporel predictive models), for
the management of the Covid-19 epidemic. Jamal ATIF, Emmanuel Bacry, Olivier Cappé, Stéphane Gaiffas, Laurent
Massoulié, etc.
• Reverse folding of RNA with Monte-Carlo research. Tristan Cazenave
• Global business recovery assessment, using environmental and business data. Alexandre d'Aspremont via Kayrros
• Research tool to search DNA sequencing Covid data. Rayan Chikhi
• Simulations of customized prevention strategies for SARS-Cov2 infections. Raphaël Porcher, collaboration with CRESS,
l’INSEAD, l’ENS Paris Saclay and UP
• Statistics for the clinical trial platform CORIMUNO-19: Raphaël Porcher
• Ministerial workshops. Emmanuel Bacry, including several Prairie fellow (LM, SA, SD, RP)
• Cross-institution research team for real life data analysis. Stéphanie Allassonnière, Stanley Durrleman, Raphaël
Porcher, collaboration avec UP, ENS Paris Saclay, Ecole Polytechnique
• Laurent Massoulié: invited speaker at the C3.ai workshop from the Digital Transformation Institute on « Epidemics,
Opinion and (Mis)Information: The Analytic Foundations of Dynamics over Networks »
Focus Healthcare: special news on COVID19
Education
14
Education programs
Goals
• Increase the number of people receiving AI training
• Promoting awareness of ethical and legal issues
• Lifelong professional education
☛ Synergies between PSL and UP
• Master 2 : Bioentrepreneurs, MVA Health track, IASD, MASH
• MD-PhD selective program: new track on IA
• Executive masters and lifelong training programs
15
• Originality and strengths
• Bringing together top academic institutions in Paris
• Club of major industry partners
• Excellence in research and education
• Fertile field for innovation in Paris
• Short terms plans
• plan new chairs
• Increase women participation
• Involve start-ups
Conclusion
16
Newsletter:
• mail to: sympa@inria.fr
• subject:subscribe prairie_news

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2021_AI4_health_prairie

  • 1.
  • 3. • A “3IA” institute, created on September 1st, 2019 • Academic partners • Industry partners ☛Specificity: transverse project, federating several institutions within Paris Our partners 3
  • 4. Support from many actors of the ecosystem 4 And many others…
  • 5. Ambition • Be a recognized international leader in AI research and education, with true socio-economic impact Strategy • Excellence in research and education • Individuals: bring together, attract and retain top talents • Academic, industrial, and international partners • A virtuous circle • Core and interdisciplinary fundamental AI research • Collaborative research with industry and applications Collaborative research for • New problems, new data, new ideas, Impact Research ambition and strategy 6
  • 6. Core of the institute: the chairs • Selected by the international jury: • 36 chairs • 9 springboards • Research on core AI, at the interface with other disciplines, related to applications • Core research (12): Machine learning and optimization (3+2), Autonomous agents and multi-agent systems (2), Network data management (4), Cognition (1), • Integration (17): Computer vision (4), Data science (5+2), Natural language processing (2), Robotics (1), Statistical physics (2), Agents, HCI, NLP, psychology (1) • Applications (16): Biological imaging (2), Medical imaging (3+1), Clinical decision support (3+1), Genomics (3+3) • Open to SSH, ethics, and law Applications fields • Health, transport, environment, but not only Outreach • Focus on diversity Main focus: Science 7 https://prairie-institute.fr/chairs/
  • 8. Medical Imaging 9 Leveraging the potential of different medical imaging modalities Ninon Burgos, Junior Research scientist CNRS, Multimodal image analysis with deep learning. Stanley Durrleman, Senior Research scientist INRIA, Dir. ICM Centre for Neuroinformatics, Disease modeling, neuroimagery. Olivier Colliot, Senior Research scientist CNRS, ARAMIS Lab Director. Multimodal image analysis, Interpretable ML for neuroradiology. Laure Fournier, MD-PhD UP, AI for radiomic, mutliscale image analysis. Challenges: “features” extraction, radiomic, multi-modale joint analysis What for: early diagnosis, treatment response prognosis Which diseases: neurodegenerative, onology
  • 9. Biological Imaging 10 Model, analyze and process images of experimental biology Challenges: neural networks modeling, statistical learning with few annotations ... What for: deciphering how evolution optimizes decision making Which diseases: oncology, Alzheimer’s disease Jean-Baptiste Masson, Junior Research scientist Pasteur, Bayesian inference, neural architecture and decision making. Thomas Walter, Junior Research scientist Mines ParisTech/Curie, Microscopy, histopathology, Computationnal phenotyping.
  • 10. Decision support systems 11 Process, model, analyze clinical and real world data Challenges: NLP on EHR, real world data, What for: optimizing the patient pathway, evaluating responses, assembling cohorts for trials Which diseases: cardiac failures, rare disease and chronic diseases Stéphanie Allassonnière, Pr. UP, PR assoc. Ecole Polytechnique Bayesian modeling and stochastic optimization for health data. Anita Burgun, MD-PhD UP, Medical informatics for personnalized medicine. Eloi Marijon, MD-PhD UP, AI for cardiac dysfunction detection. Raphael Porcher, MD-PhD UP Personnalized therapies, causale inference.
  • 11. Genomic 12 Leveraging the potential of different medical imaging modalities Challenges: large scale analysis of heterogeneous data What for: understanding the biology of cancer, classifying tumors, predicting therapeutic response, proposing therapeutic targets Chloé-A. Azencott Ass. Prof. Mines, Founder of Paris Women in ML, Statistical genetics. Emmanuel Barillot, Research scientist, Curie institute, Computational biology for precision medicine. Rayan Chikhi, CNRS, ADN Sequencing for Alzheimer’s disease. Eric Letouzé, Junior research scientist INSERM, Cancer Genomics. Andrei Zinovyev, Senior research scientist Curie, Multi-omics and single cell.
  • 12. • « Face Au Virus »: exploitation of data from Facebook, (https://www.psl.eu/initiative-scientifique-face-au-virus) • M-PRESTO: Modèles PRédictifs multi-Echelles Spatio-TempOrels (multi-scale spatio-temporel predictive models), for the management of the Covid-19 epidemic. Jamal ATIF, Emmanuel Bacry, Olivier Cappé, Stéphane Gaiffas, Laurent Massoulié, etc. • Reverse folding of RNA with Monte-Carlo research. Tristan Cazenave • Global business recovery assessment, using environmental and business data. Alexandre d'Aspremont via Kayrros • Research tool to search DNA sequencing Covid data. Rayan Chikhi • Simulations of customized prevention strategies for SARS-Cov2 infections. Raphaël Porcher, collaboration with CRESS, l’INSEAD, l’ENS Paris Saclay and UP • Statistics for the clinical trial platform CORIMUNO-19: Raphaël Porcher • Ministerial workshops. Emmanuel Bacry, including several Prairie fellow (LM, SA, SD, RP) • Cross-institution research team for real life data analysis. Stéphanie Allassonnière, Stanley Durrleman, Raphaël Porcher, collaboration avec UP, ENS Paris Saclay, Ecole Polytechnique • Laurent Massoulié: invited speaker at the C3.ai workshop from the Digital Transformation Institute on « Epidemics, Opinion and (Mis)Information: The Analytic Foundations of Dynamics over Networks » Focus Healthcare: special news on COVID19
  • 14. Education programs Goals • Increase the number of people receiving AI training • Promoting awareness of ethical and legal issues • Lifelong professional education ☛ Synergies between PSL and UP • Master 2 : Bioentrepreneurs, MVA Health track, IASD, MASH • MD-PhD selective program: new track on IA • Executive masters and lifelong training programs 15
  • 15. • Originality and strengths • Bringing together top academic institutions in Paris • Club of major industry partners • Excellence in research and education • Fertile field for innovation in Paris • Short terms plans • plan new chairs • Increase women participation • Involve start-ups Conclusion 16 Newsletter: • mail to: sympa@inria.fr • subject:subscribe prairie_news