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CAMPBELL BIOLOGY IN FOCUS
© 2014 Pearson Education, Inc.
Urry • Cain • Wasserman • Minorsky • Jackson • Reece
Lecture Presentations by
Kathleen Fitzpatrick and Nicole Tunbridge
24
Early Life and
the Diversification
of Prokaryotes
© 2014 Pearson Education, Inc.
 Earth formed 4.6 billion years ago
 The oldest fossil organisms are prokaryotes dating
back to 3.5 billion years ago
 Prokaryotes are single-celled organisms in the
domains Bacteria and Archaea
 Some of the earliest prokaryotic cells lived in dense
mats that resembled stepping stones
Overview: The First Cells
© 2014 Pearson Education, Inc.
Figure 24.1
© 2014 Pearson Education, Inc.
 Prokaryotes are the most abundant organisms
on Earth
 There are more in a handful of fertile soil than the
number of people who have ever lived
 Prokaryotes thrive almost everywhere, including
places too acidic, salty, cold, or hot for most other
organisms
 Some prokaryotes colonize the bodies of other
organisms
© 2014 Pearson Education, Inc.
Figure 24.2
© 2014 Pearson Education, Inc.
Concept 24.1: Conditions on early Earth made
the origin of life possible
 Chemical and physical processes on early Earth may
have produced very simple cells through a sequence
of stages
1. Abiotic synthesis of small organic molecules
2. Joining of these small molecules into macromolecules
3. Packaging of molecules into protocells, membrane-
bound droplets that maintain a consistent internal
chemistry
4. Origin of self-replicating molecules
© 2014 Pearson Education, Inc.
Synthesis of Organic Compounds on Early Earth
 Earth’s early atmosphere likely contained water
vapor and chemicals released by volcanic eruptions
(nitrogen, nitrogen oxides, carbon dioxide, methane,
ammonia, and hydrogen)
 As Earth cooled, water vapor condensed into oceans,
and most of the hydrogen escaped into space
© 2014 Pearson Education, Inc.
 In the 1920s, A. I. Oparin and J. B. S. Haldane
hypothesized that the early atmosphere was a
reducing environment
 In 1953, Stanley Miller and Harold Urey conducted
lab experiments that showed that the abiotic
synthesis of organic molecules in a reducing
atmosphere is possible
© 2014 Pearson Education, Inc.
 However, the evidence is not yet convincing that the
early atmosphere was in fact reducing
 Instead of forming in the atmosphere, the first organic
compounds may have been synthesized near
volcanoes or deep-sea vents
 Miller-Urey-type experiments demonstrate that
organic molecules could have formed with various
possible atmospheres
 Organic molecules have also been found in
meteorites
Video: Hydrothermal Vent Video: Tubeworms
© 2014 Pearson Education, Inc.
Figure 24.3
Massof
aminoacids(mg)
Numberof
aminoacids
1953 19532008
20
2008
10
0
200
100
0
© 2014 Pearson Education, Inc.
Figure 24.3a
© 2014 Pearson Education, Inc.
Abiotic Synthesis of Macromolecules
 RNA monomers have been produced spontaneously
from simple molecules
 Small organic molecules polymerize when they are
concentrated on hot sand, clay, or rock
© 2014 Pearson Education, Inc.
Protocells
 Replication and metabolism are key properties of life
and may have appeared together
 Protocells may have been fluid-filled vesicles with a
membrane-like structure
 In water, lipids and other organic molecules can
spontaneously form vesicles with a lipid bilayer
© 2014 Pearson Education, Inc.
 Adding clay can increase the rate of vesicle formation
 Vesicles exhibit simple reproduction and metabolism
and maintain an internal chemical environment
© 2014 Pearson Education, Inc.
Figure 24.4
Vesicle
boundary
Precursor
molecules only
1 µm
Relativeturbidity,an
indexofvesiclenumber
(a) Self-assembly
Time (minutes)
0.4
0.2
0
0 20 40 60
Precursor molecules plus
montmorillonite clay
20 µm
(c) Absorption of RNA(b) Reproduction
© 2014 Pearson Education, Inc.
Figure 24.4a
Precursor
molecules only
Relativeturbidity,an
indexofvesiclenumber
Time (minutes)
0.4
0.2
0
0 20 40 60
Precursor molecules plus
montmorillonite clay
(a) Self-assembly
© 2014 Pearson Education, Inc.
Figure 24.4b
20 µm
(b) Reproduction
© 2014 Pearson Education, Inc.
Figure 24.4c
Vesicle
boundary
1 µm
(c) Absorption of RNA
© 2014 Pearson Education, Inc.
Self-Replicating RNA
 The first genetic material was probably RNA,
not DNA
 RNA molecules called ribozymes have been found
to catalyze many different reactions
 For example, ribozymes can make complementary
copies of short stretches of RNA
© 2014 Pearson Education, Inc.
 Natural selection has produced self-replicating RNA
molecules
 RNA molecules that were more stable or replicated
more quickly would have left the most descendant
RNA molecules
 The early genetic material might have formed an
“RNA world”
© 2014 Pearson Education, Inc.
 Vesicles with RNA capable of replication would
have been protocells
 RNA could have provided the template for DNA, a
more stable genetic material
© 2014 Pearson Education, Inc.
Fossil Evidence of Early Life
 Many of the oldest fossils are stromatolites, layered
rocks that formed from the activities of prokaryotes
up to 3.5 billion years ago
 Ancient fossils of individual prokaryotic cells have
also been discovered
 For example, fossilized prokaryotic cells have been
found in 3.4-billion-year-old rocks from Australia
© 2014 Pearson Education, Inc.
Figure 24.5
Time (billions of years ago)
10 µm
30µm
5cm
Nonphotosynthetic bacteria
Cyanobacteria
Stromatolites
Possible
earliest
appearance
in fossil record
4 3 2 1 0
© 2014 Pearson Education, Inc.
Figure 24.5a
Time (billions of years ago)
Nonphotosynthetic bacteria
Cyanobacteria
Stromatolites
Possible
earliest
appearance
in fossil record
4 3 2 1 0
© 2014 Pearson Education, Inc.
Figure 24.5b
30µm
3-billion-year-old
fossil of a cluster of
nonphotosynthetic
prokaryote cells
© 2014 Pearson Education, Inc.
Figure 24.5c
5cm
1.1-billion-year-old
fossilized stromatolite
© 2014 Pearson Education, Inc.
Figure 24.5d
10 µm
1.5-billion-year-old fossil
of a cyanobacterium
© 2014 Pearson Education, Inc.
 The cyanobacteria that form stromatolites were
the main photosynthetic organisms for over a
billion years
 Early cyanobacteria began the release of oxygen
into Earth’s atmosphere
 Surviving prokaryote lineages either avoided or
adapted to the newly aerobic environment
© 2014 Pearson Education, Inc.
Concept 24.2: Diverse structural and metabolic
adaptations have evolved in prokaryotes
 Most prokaryotes are unicellular, although some
species form colonies
 Most prokaryotic cells have diameters of 0.5–5 µm,
much smaller than the 10–100 µm diameter of many
eukaryotic cells
 Prokaryotic cells have a variety of shapes
 The three most common shapes are spheres (cocci),
rods (bacilli), and spirals
© 2014 Pearson Education, Inc.
Figure 24.6
3µm
(a) Spherical (b) Rod-shaped (c) Spiral
1µm
1µm
© 2014 Pearson Education, Inc.
Figure 24.6a
(a) Spherical
1µm
© 2014 Pearson Education, Inc.
Figure 24.6b
(b) Rod-shaped
1µm
© 2014 Pearson Education, Inc.
Figure 24.6c
3µm
(c) Spiral
© 2014 Pearson Education, Inc.
Cell-Surface Structures
 A key feature of nearly all prokaryotic cells is their cell
wall, which maintains cell shape, protects the cell, and
prevents it from bursting in a hypotonic environment
 Eukaryote cell walls are made of cellulose or chitin
 Bacterial cell walls contain peptidoglycan, a network
of modified sugars cross-linked by polypeptides
© 2014 Pearson Education, Inc.
 Archaeal cell walls contain polysaccharides and
proteins but lack peptidoglycan
 Scientists use the Gram stain to classify bacteria by
cell wall composition
 Gram-positive bacteria have simpler walls with a
large amount of peptidoglycan
 Gram-negative bacteria have less peptidoglycan
and an outer membrane that can be toxic
© 2014 Pearson Education, Inc.
Figure 24.7
Peptido-
glycan
layer
Cell
wall
Gram-negative
bacteria
10 µm
Gram-positive
bacteria
(b) Gram-negative
bacteria
(a) Gram-positive
bacteria
Plasma
membrane
Plasma membrane
Peptidoglycan
layer
Cell
wall
Outer
membrane
Carbohydrate portion
of lipopolysaccharide
© 2014 Pearson Education, Inc.
Figure 24.7a
Peptido-
glycan
layer
Cell
wall
(a) Gram-positive
bacteria
Plasma
membrane
© 2014 Pearson Education, Inc.
Figure 24.7b
(b) Gram-negative
bacteria
Plasma membrane
Peptidoglycan
layer
Cell
wall
Outer
membrane
Carbohydrate portion
of lipopolysaccharide
© 2014 Pearson Education, Inc.
Figure 24.7c
Gram-negative
bacteria
10 µm
Gram-positive
bacteria
© 2014 Pearson Education, Inc.
 Many antibiotics target peptidoglycan and damage
bacterial cell walls
 Gram-negative bacteria are more likely to be
antibiotic resistant
 A polysaccharide or protein layer called a capsule
covers many prokaryotes
© 2014 Pearson Education, Inc.
Figure 24.8
Bacterial
cell wall
Bacterial
capsule
Tonsil
cell
200 nm
© 2014 Pearson Education, Inc.
 Some bacteria develop resistant cells called
endospores when they lack an essential nutrient
 Other bacteria have fimbriae, which allow them to
stick to their substrate or other individuals in a
colony
 Pili (or sex pili) are longer than fimbriae and allow
prokaryotes to exchange DNA
© 2014 Pearson Education, Inc.
Figure 24.9
Fimbriae
1 µm
© 2014 Pearson Education, Inc.
Motility
 In a heterogeneous environment, many bacteria
exhibit taxis, the ability to move toward or away
from a stimulus
 Chemotaxis is the movement toward or away from
a chemical stimulus
© 2014 Pearson Education, Inc.
 Most motile bacteria propel themselves by flagella
scattered about the surface or concentrated at one
or both ends
 Flagella of bacteria, archaea, and eukaryotes are
composed of different proteins and likely evolved
independently
© 2014 Pearson Education, Inc.
Figure 24.10
Flagellum
Filament 20 nm
Hook
MotorCell wall
Rod
Peptidoglycan
layer
Plasma
membrane
© 2014 Pearson Education, Inc.
Figure 24.10a
20 nm
Hook
Motor
© 2014 Pearson Education, Inc.
Evolutionary Origins of Bacterial Flagella
 Bacterial flagella are composed of a motor, hook,
and filament
 Many of the flagella’s proteins are modified versions
of proteins that perform other tasks in bacteria
 Flagella likely evolved as existing proteins were
added to an ancestral secretory system
 This is an example of exaptation, where existing
structures take on new functions through descent
with modification
© 2014 Pearson Education, Inc.
Internal Organization and DNA
 Prokaryotic cells usually lack complex
compartmentalization
 Some prokaryotes do have specialized membranes
that perform metabolic functions
 These are usually infoldings of the plasma membrane
© 2014 Pearson Education, Inc.
Figure 24.11
Respiratory
membrane
0.2 µm 1 µm
Thylakoid
membranes
(a) Aerobic prokaryote (b) Photosynthetic prokaryote
© 2014 Pearson Education, Inc.
Figure 24.11a
Respiratory
membrane
0.2 µm
(a) Aerobic prokaryote
© 2014 Pearson Education, Inc.
Figure 24.11b
1 µm
Thylakoid
membranes
(b) Photosynthetic prokaryote
© 2014 Pearson Education, Inc.
 The prokaryotic genome has less DNA than the
eukaryotic genome
 Most of the genome consists of a circular
chromosome
 The chromosome is not surrounded by a membrane;
it is located in the nucleoid region
 Some species of bacteria also have smaller rings of
DNA called plasmids
© 2014 Pearson Education, Inc.
Figure 24.12
Plasmids
1 µm
Chromosome
© 2014 Pearson Education, Inc.
 There are some differences between prokaryotes
and eukaryotes in DNA replication, transcription,
and translation
 These allow people to use some antibiotics to inhibit
bacterial growth without harming themselves
© 2014 Pearson Education, Inc.
Nutritional and Metabolic Adaptations
 Prokaryotes can be categorized by how they obtain
energy and carbon
 Phototrophs obtain energy from light
 Chemotrophs obtain energy from chemicals
 Autotrophs require CO2 as a carbon source
 Heterotrophs require an organic nutrient to make
organic compounds
© 2014 Pearson Education, Inc.
 Energy and carbon sources are combined to give
four major modes of nutrition
 Photoautotrophy
 Chemoautotrophy
 Photoheterotrophy
 Chemoheterotrophy
© 2014 Pearson Education, Inc.
Table 24.1
© 2014 Pearson Education, Inc.
The Role of Oxygen in Metabolism
 Prokaryotic metabolism varies with respect to O2
 Obligate aerobes require O2 for cellular respiration
 Obligate anaerobes are poisoned by O2 and use
fermentation or anaerobic respiration, in which
substances other than O2 act as electron acceptors
 Facultative anaerobes can survive with or without O2
© 2014 Pearson Education, Inc.
Nitrogen Metabolism
 Nitrogen is essential for the production of amino
acids and nucleic acids
 Prokaryotes can metabolize nitrogen in a variety of
ways
 In nitrogen fixation, some prokaryotes convert
atmospheric nitrogen (N2) to ammonia (NH3)
© 2014 Pearson Education, Inc.
Metabolic Cooperation
 Cooperation between prokaryotes allows them to use
environmental resources they could not use as
individual cells
 In the cyanobacterium Anabaena, photosynthetic
cells and nitrogen-fixing cells called heterocysts (or
heterocytes) exchange metabolic products
© 2014 Pearson Education, Inc.
Figure 24.13
20 µm
Heterocyst
Photosynthetic
cells
© 2014 Pearson Education, Inc.
 In some prokaryotic species, metabolic cooperation
occurs in surface-coating colonies called biofilms
© 2014 Pearson Education, Inc.
Reproduction
 Prokaryotes reproduce quickly by binary fission and
can divide every 1–3 hours
 Key features of prokaryotic biology allow them to
divide quickly
 They are small
 They reproduce by binary fission
 They have short generation times
© 2014 Pearson Education, Inc.
Adaptations of Prokaryotes: A Summary
 The ongoing success of prokaryotes is an
extraordinary example of physiological and
metabolic diversification
 Prokaryotic diversification can be viewed as a first
great wave of adaptive radiation in the evolutionary
history of life
© 2014 Pearson Education, Inc.
 Prokaryotes have considerable genetic variation
 Three factors contribute to this genetic diversity
 Rapid reproduction
 Mutation
 Genetic recombination
Concept 24.3: Rapid reproduction, mutation, and
genetic recombination promote genetic diversity
in prokaryotes
© 2014 Pearson Education, Inc.
Rapid Reproduction and Mutation
 Prokaryotes reproduce by binary fission, and
offspring cells are generally identical
 Mutation rates during binary fission are low, but
because of rapid reproduction, mutations can
accumulate rapidly in a population
 High diversity from mutations allows for rapid
evolution
 Prokaryotes are not “primitive” but are highly evolved
© 2014 Pearson Education, Inc.
Figure 24.14
Experiment
0.1 mL
(population sample)
Results
Daily serial transfer
Old tube
(discarded
after
transfer)
New tube
(9.9 mL
growth
medium)
Populationgrowthrate
(relativetoancestral
population)
Generation
10,000 20,00015,0005,0000
1.8
1.6
1.4
1.2
1.0
© 2014 Pearson Education, Inc.
Figure 24.14a
ResultsPopulationgrowthrate
(relativetoancestral
population)
Generation
10,000 20,00015,0005,0000
1.8
1.6
1.4
1.2
1.0
© 2014 Pearson Education, Inc.
Genetic Recombination
 Genetic recombination, the combining of DNA from
two sources, contributes to diversity
 Prokaryotic DNA from different individuals can be
brought together by transformation, transduction,
and conjugation
 Movement of genes among individuals from
different species is called horizontal gene transfer
© 2014 Pearson Education, Inc.
Transformation and Transduction
 A prokaryotic cell can take up and incorporate
foreign DNA from the surrounding environment in a
process called transformation
 Transduction is the movement of genes between
bacteria by bacteriophages (viruses that infect
bacteria)
© 2014 Pearson Education, Inc.
Figure 24.15-1
1 Phage infects bacterial
donor cell with A+
and
B+
alleles.
Donor cell
A+
B+
Phage DNA
© 2014 Pearson Education, Inc.
Figure 24.15-2
2
1 Phage infects bacterial
donor cell with A+
and
B+
alleles.
Phage DNA is
replicated and
proteins synthesized.
Donor cell
A+
B+
A+
B+
Phage DNA
© 2014 Pearson Education, Inc.
Figure 24.15-3
3
2
1 Phage infects bacterial
donor cell with A+
and
B+
alleles.
Phage DNA is
replicated and
proteins synthesized.
Fragment of DNA with
A+
allele is packaged
within a phage capsid.
Donor cell
A+
A+
B+
A+
B+
Phage DNA
© 2014 Pearson Education, Inc.
4
3
2
1 Phage infects bacterial
donor cell with A+
and
B+
alleles.
Phage DNA is
replicated and
proteins synthesized.
Fragment of DNA with
A+
allele is packaged
within a phage capsid.
Phage with A+
allele
infects bacterial
recipient cell.
Recipient
cell
Crossing over
Donor cell
A−
B−
A+
A+
A+
B+
A+
B+
Phage DNA
Figure 24.15-4
© 2014 Pearson Education, Inc.
Figure 24.15-5
Phage infects bacterial
donor cell with A+
and
B+
alleles.
Incorporation of phage
DNA creates recombinant
cell with genotype A+
B+
.
Phage DNA is
replicated and
proteins synthesized.
Fragment of DNA with
A+
allele is packaged
within a phage capsid.
Phage with A+
allele
infects bacterial
recipient cell.
Recombinant
cell
Recipient
cell
Crossing over
Donor cell
A+
B−
A−
B−
A+
A+
A+
B+
A+
B+
Phage DNA
5
4
3
2
1
© 2014 Pearson Education, Inc.
Conjugation and Plasmids
 Conjugation is the process where genetic material
is transferred between prokaryotic cells
 In bacteria, the DNA transfer is one way
 In E. coli, the donor cell attaches to a recipient by a
pilus, pulls it closer, and transfers DNA
© 2014 Pearson Education, Inc.
Figure 24.16
Sex pilus
1 µm
© 2014 Pearson Education, Inc.
 The F factor is a piece of DNA required for the
production of pili
 Cells containing the F plasmid (F+
) function as DNA
donors during conjugation
 Cells without the F factor (F–
) function as DNA
recipients during conjugation
 The F factor is transferable during conjugation
© 2014 Pearson Education, Inc.
Figure 24.17-1
1 One strand of
F+
cell plasmid
DNA breaks at
arrowhead.
Bacterial
chromosome
Bacterial
chromosome
F plasmid
Mating
bridge
F+
cell
(donor)
F−
cell
(recipient)
© 2014 Pearson Education, Inc.
Figure 24.17-2
21 One strand of
F+
cell plasmid
DNA breaks at
arrowhead.
Bacterial
chromosome
Bacterial
chromosome
F plasmid
Mating
bridge
F+
cell
(donor)
F−
cell
(recipient)
Broken strand
peels off and
enters F−
cell.
© 2014 Pearson Education, Inc.
Figure 24.17-3
321 One strand of
F+
cell plasmid
DNA breaks at
arrowhead.
Bacterial
chromosome
Bacterial
chromosome
F plasmid
Mating
bridge
F+
cell
(donor)
F−
cell
(recipient)
Broken strand
peels off and
enters F−
cell.
Donor and
recipient cells
synthesize
complementary
DNA strands.
© 2014 Pearson Education, Inc.
Figure 24.17-4
4321 One strand of
F+
cell plasmid
DNA breaks at
arrowhead.
Bacterial
chromosome
Bacterial
chromosome
F plasmid
Mating
bridge
F+
cell
(donor)
F−
cell
(recipient)
F+
cell
F+
cell
Broken strand
peels off and
enters F−
cell.
Recipient cell
is now a
recombinant
F+
cell.
Donor and
recipient cells
synthesize
complementary
DNA strands.
© 2014 Pearson Education, Inc.
 The F factor can also be integrated into the
chromosome
 A cell with the F factor built into its chromosomes
functions as a donor during conjugation
 The recipient becomes a recombinant bacterium,
with DNA from two different cells
© 2014 Pearson Education, Inc.
R Plasmids and Antibiotic Resistance
 Genes for antibiotic resistance are carried in R
plasmids
 Antibiotics kill sensitive bacteria, but not bacteria with
specific R plasmids
 Through natural selection, the fraction of bacteria
with genes for resistance increases in a population
exposed to antibiotics
 Antibiotic-resistant strains of bacteria are becoming
more common
© 2014 Pearson Education, Inc.
Concept 24.4: Prokaryotes have radiated into a
diverse set of lineages
 Prokaryotes have radiated extensively due to
diverse structural and metabolic adaptations
 Prokaryotes inhabit every environment known to
support life
© 2014 Pearson Education, Inc.
An Overview of Prokaryotic Diversity
 Applying molecular systematics to the investigation
of prokaryotic phylogeny has produced dramatic
results
 Molecular systematics led to the splitting of
prokaryotes into bacteria and archaea
 Molecular systematists continue to work on the
phylogeny of prokaryotes
© 2014 Pearson Education, Inc.
Figure 24.18
UNIVERSAL
ANCESTOR
Domain
Eukarya
Gram-positive
bacteria
Cyanobacteria
Spirochetes
Chlamydias
Proteobacteria
Nanoarchaeotes
Crenarchaeotes
Euryarchaeotes
Korarchaeotes
Eukaryotes
DomainArchaeaDomainBacteria
© 2014 Pearson Education, Inc.
 The use of polymerase chain reaction (PCR) has
allowed for more rapid sequencing of prokaryote
genomes
 A handful of soil may contain 10,000 prokaryotic
species
 Horizontal gene transfer between prokaryotes
obscures the root of the tree of life
© 2014 Pearson Education, Inc.
Bacteria
 Bacteria include the vast majority of prokaryotes
familiar to most people
 Diverse nutritional types are scattered among the
major groups of bacteria
Video: Tubeworms
© 2014 Pearson Education, Inc.
Figure 24.UN01
Eukarya
Bacteria
Archaea
© 2014 Pearson Education, Inc.
Figure 24.19a
Alpha subgroup Beta subgroup
Gamma subgroup Delta subgroup Epsilon subgroup
Rhizobium (arrows)
(TEM)
Nitrosomonas
(TEM)
Thiomargarita
namibiensis (LM)
Helicobacter pylori
(TEM)
Chondromyces
crocatus (SEM)
Proteo-
bacteria
Alpha
Beta
Gamma
Delta
Epsilon
2.5µm
1µm2µm
300µm
200µm
© 2014 Pearson Education, Inc.
 Proteobacteria are gram-negative bacteria including
photoautotrophs, chemoautotrophs, and
heterotrophs
 Some are anaerobic and others aerobic
© 2014 Pearson Education, Inc.
Figure 24.19aa
Proteobacteria
Alpha
Beta
Gamma
Delta
Epsilon
© 2014 Pearson Education, Inc.
 Members of the subgroup alpha proteobacteria
are closely associated with eukaryotic hosts in
many cases
 Scientists hypothesize that mitochondria evolved
from aerobic alpha proteobacteria through
endosymbiosis
 Example: Rhizobium, which forms root nodules in
legumes and fixes atmospheric N2
 Example: Agrobacterium, which produces tumors in
plants and is used in genetic engineering
© 2014 Pearson Education, Inc.
Figure 24.19ab
Alpha subgroup
Rhizobium (arrows)
inside a root cell of
a legume (TEM)
2.5µm
© 2014 Pearson Education, Inc.
 Members of the subgroup beta proteobacteria are
nutritionally diverse
 Example: the soil bacterium Nitrosomonas, which
converts NH4
+
to NO2
–
© 2014 Pearson Education, Inc.
Figure 24.19ac
Beta subgroup
Nitrosomonas
(colorized TEM)
1µm
© 2014 Pearson Education, Inc.
 The subgroup gamma proteobacteria includes
sulfur bacteria such as Thiomargarita namibiensis
and pathogens such as Legionella, Salmonella, and
Vibrio cholerae
 Escherichia coli resides in the intestines of many
mammals and is not normally pathogenic
© 2014 Pearson Education, Inc.
Figure 24.19ad
Gamma subgroup
Thiomargarita
namibiensis containing
sulfur wastes (LM)
200µm
© 2014 Pearson Education, Inc.
 The subgroup delta proteobacteria includes the
slime-secreting myxobacteria and bdellovibrios, a
bacteria that attacks other bacteria
© 2014 Pearson Education, Inc.
Figure 24.19ae
Delta subgroup
Fruiting bodies of
Chondromyces crocatus,
a myxobacterium (SEM)
300µm
© 2014 Pearson Education, Inc.
 The subgroup epsilon proteobacteria contains
many pathogens including Campylobacter, which
causes blood poisoning, and Helicobacter pylori,
which causes stomach ulcers
© 2014 Pearson Education, Inc.
Figure 24.19af
Epsilon subgroup
Helicobacter pylori
(colorized TEM)
2µm
© 2014 Pearson Education, Inc.
Figure 24.19b
Spirochetes Cyanobacteria
Gram-positive bacteria
Chlamydias
Leptospira
(TEM)
Oscillatoria
Streptomyces
(SEM)
Chlamydia (arrows)
(TEM)
Mycoplasmas
(SEM)
2.5µm
40µm
5µm2µm
5µm
© 2014 Pearson Education, Inc.
 Chlamydias are parasites that live within
animal cells
 Chlamydia trachomatis causes blindness and
nongonococcal urethritis by sexual transmission
© 2014 Pearson Education, Inc.
Figure 24.19ba
Chlamydias
Chlamydia (arrows)
inside an animal cell
(colorized TEM)
2.5µm
© 2014 Pearson Education, Inc.
 Spirochetes are helical heterotrophs
 Some are parasites, including Treponema pallidum,
which causes syphilis, and Borrelia burgdorferi,
which causes Lyme disease
© 2014 Pearson Education, Inc.
Figure 24.19bb
Spirochetes
Leptospira,
a spirochete
(colorized TEM)
5µm
© 2014 Pearson Education, Inc.
 Cyanobacteria are photoautotrophs that generate O2
 Plant chloroplasts likely evolved from cyanobacteria
by the process of endosymbiosis
© 2014 Pearson Education, Inc.
Figure 24.19bc
Cyanobacteria
Oscillatoria,
a filamentous
cyanobacterium
40µm
© 2014 Pearson Education, Inc.
 Gram-positive bacteria include
 Actinomycetes, which decompose soil
 Streptomyces, which are a source of antibiotics
 Bacillus anthracis, the cause of anthrax
 Clostridium botulinum, the cause of botulism
 Some Staphylococcus and Streptococcus, which can
be pathogenic
 Mycoplasms, the smallest known cells
© 2014 Pearson Education, Inc.
Figure 24.19bd
Gram-positive bacteria
Streptomyces,
the source of
many antibiotics
(SEM)
5µm
© 2014 Pearson Education, Inc.
Figure 24.19be
Gram-positive bacteria
Hundreds of mycoplasmas
covering a human
fibroblast cell
(colorized SEM)
2µm
© 2014 Pearson Education, Inc.
Archaea
 Archaea share certain traits with bacteria and other
traits with eukaryotes
© 2014 Pearson Education, Inc.
Figure 24.UN02
Eukarya
Bacteria
Archaea
© 2014 Pearson Education, Inc.
Table 24.2
© 2014 Pearson Education, Inc.
Table 24.2a
© 2014 Pearson Education, Inc.
Table 24.2b
© 2014 Pearson Education, Inc.
 Some archaea live in extreme environments and are
called extremophiles
 Extreme halophiles live in highly saline
environments
 Extreme thermophiles thrive in very hot
environments
Video: Cyanobacteria (Oscillatoria)
© 2014 Pearson Education, Inc.
Figure 24.20
© 2014 Pearson Education, Inc.
 Methanogens produce methane as a waste product
 Methanogens are strict anaerobes and are poisoned
by O2
 Methanogens live in swamps and marshes, in the
guts of cattle, and near deep-sea hydrothermal
vents
© 2014 Pearson Education, Inc.
Figure 24.21
2 µm
© 2014 Pearson Education, Inc.
Figure 24.21a
© 2014 Pearson Education, Inc.
Figure 24.21b
2 µm
© 2014 Pearson Education, Inc.
 Recent metagenomic studies have revealed many
new groups of archaea
 Some of these may offer clues to the early evolution
of life on Earth
© 2014 Pearson Education, Inc.
Concept 24.5: Prokaryotes play crucial roles in
the biosphere
 Prokaryotes are so important that if they were to
disappear, the prospects for any other life surviving
would be dim
© 2014 Pearson Education, Inc.
Chemical Recycling
 Prokaryotes play a major role in the recycling of
chemical elements between the living and nonliving
components of ecosystems
 Chemoheterotrophic prokaryotes function as
decomposers, breaking down dead organisms
and waste products
© 2014 Pearson Education, Inc.
 Prokaryotes can sometimes increase the availability
of nitrogen, phosphorus, and potassium for plant
growth
 Prokaryotes can also “immobilize” or decrease the
availability of nutrients
© 2014 Pearson Education, Inc.
Figure 24.22
Seedlings growing in the lab
Soil treatment
UptakeofKbyplants(mg)
Strain 1 Strain 2 Strain 3No
bacteria
1.0
0.8
0.6
0.4
0.2
0
© 2014 Pearson Education, Inc.
Figure 24.22a
Seedlings growing in the lab
© 2014 Pearson Education, Inc.
Ecological Interactions
 Symbiosis is an ecological relationship in which
two species live in close contact: a larger host and
smaller symbiont
 Prokaryotes often form symbiotic relationships with
larger organisms
© 2014 Pearson Education, Inc.
 In mutualism, both symbiotic organisms benefit
 In commensalism, one organism benefits while
neither harming nor helping the other in any
significant way
 In parasitism, an organism called a parasite harms
but does not kill its host
 Parasites that cause disease are called pathogens
© 2014 Pearson Education, Inc.
Figure 24.23
© 2014 Pearson Education, Inc.
 The ecological communities of hydrothermal vents
depend on chemoautotrophic bacteria for energy
© 2014 Pearson Education, Inc.
Impact on Humans
 The best-known prokaryotes are pathogens, but
many others have positive interactions with humans
© 2014 Pearson Education, Inc.
Mutualistic Bacteria
 Human intestines are home to about 500–1,000
species of bacteria
 Many of these are mutualists and break down food
that is undigested by our intestines
© 2014 Pearson Education, Inc.
Pathogenic Bacteria
 Prokaryotes cause about half of all human diseases
 For example, Lyme disease is caused by a bacterium
and carried by ticks
© 2014 Pearson Education, Inc.
Figure 24.24
5 µm
© 2014 Pearson Education, Inc.
Figure 24.24a
© 2014 Pearson Education, Inc.
Figure 24.24b
© 2014 Pearson Education, Inc.
Figure 24.24c
5 µm
© 2014 Pearson Education, Inc.
 Pathogenic prokaryotes typically cause disease by
releasing exotoxins or endotoxins
 Exotoxins are secreted and cause disease even if
the prokaryotes that produce them are not present
 Endotoxins are released only when bacteria die
and their cell walls break down
© 2014 Pearson Education, Inc.
 Horizontal gene transfer can spread genes
associated with virulence
 For example, pathogenic strains of the normally
harmless E. coli bacteria have emerged through
horizontal gene transfer
© 2014 Pearson Education, Inc.
Prokaryotes in Research and Technology
 Experiments using prokaryotes have led to important
advances in DNA technology
 For example, E. coli is used in gene cloning
 For example, Agrobacterium tumefaciens is used to
produce transgenic plants
© 2014 Pearson Education, Inc.
 Bacteria can now be used to make natural plastics
 Prokaryotes are the principal agents in
bioremediation, the use of organisms to remove
pollutants from the environment
 Bacteria can be engineered to produce vitamins,
antibiotics, and hormones
 Bacteria are also being engineered to produce
ethanol from waste biomass
© 2014 Pearson Education, Inc.
Figure 24.25
(a)
(b)
© 2014 Pearson Education, Inc.
Figure 24.25a
(a)
© 2014 Pearson Education, Inc.
Figure 24.25b
(b)
© 2014 Pearson Education, Inc.
Figure 24.26
© 2014 Pearson Education, Inc.
Figure 24.UN03
© 2014 Pearson Education, Inc.
Figure 24.UN04
Fimbriae
Cell wall
Capsule
Flagella
Sex pilus
Internal
organization
Circular
chromosome
© 2014 Pearson Education, Inc.
Figure 24.UN05

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24lecturepresentation 160331123248

  • 1. CAMPBELL BIOLOGY IN FOCUS © 2014 Pearson Education, Inc. Urry • Cain • Wasserman • Minorsky • Jackson • Reece Lecture Presentations by Kathleen Fitzpatrick and Nicole Tunbridge 24 Early Life and the Diversification of Prokaryotes
  • 2. © 2014 Pearson Education, Inc.  Earth formed 4.6 billion years ago  The oldest fossil organisms are prokaryotes dating back to 3.5 billion years ago  Prokaryotes are single-celled organisms in the domains Bacteria and Archaea  Some of the earliest prokaryotic cells lived in dense mats that resembled stepping stones Overview: The First Cells
  • 3. © 2014 Pearson Education, Inc. Figure 24.1
  • 4. © 2014 Pearson Education, Inc.  Prokaryotes are the most abundant organisms on Earth  There are more in a handful of fertile soil than the number of people who have ever lived  Prokaryotes thrive almost everywhere, including places too acidic, salty, cold, or hot for most other organisms  Some prokaryotes colonize the bodies of other organisms
  • 5. © 2014 Pearson Education, Inc. Figure 24.2
  • 6. © 2014 Pearson Education, Inc. Concept 24.1: Conditions on early Earth made the origin of life possible  Chemical and physical processes on early Earth may have produced very simple cells through a sequence of stages 1. Abiotic synthesis of small organic molecules 2. Joining of these small molecules into macromolecules 3. Packaging of molecules into protocells, membrane- bound droplets that maintain a consistent internal chemistry 4. Origin of self-replicating molecules
  • 7. © 2014 Pearson Education, Inc. Synthesis of Organic Compounds on Early Earth  Earth’s early atmosphere likely contained water vapor and chemicals released by volcanic eruptions (nitrogen, nitrogen oxides, carbon dioxide, methane, ammonia, and hydrogen)  As Earth cooled, water vapor condensed into oceans, and most of the hydrogen escaped into space
  • 8. © 2014 Pearson Education, Inc.  In the 1920s, A. I. Oparin and J. B. S. Haldane hypothesized that the early atmosphere was a reducing environment  In 1953, Stanley Miller and Harold Urey conducted lab experiments that showed that the abiotic synthesis of organic molecules in a reducing atmosphere is possible
  • 9. © 2014 Pearson Education, Inc.  However, the evidence is not yet convincing that the early atmosphere was in fact reducing  Instead of forming in the atmosphere, the first organic compounds may have been synthesized near volcanoes or deep-sea vents  Miller-Urey-type experiments demonstrate that organic molecules could have formed with various possible atmospheres  Organic molecules have also been found in meteorites Video: Hydrothermal Vent Video: Tubeworms
  • 10. © 2014 Pearson Education, Inc. Figure 24.3 Massof aminoacids(mg) Numberof aminoacids 1953 19532008 20 2008 10 0 200 100 0
  • 11. © 2014 Pearson Education, Inc. Figure 24.3a
  • 12. © 2014 Pearson Education, Inc. Abiotic Synthesis of Macromolecules  RNA monomers have been produced spontaneously from simple molecules  Small organic molecules polymerize when they are concentrated on hot sand, clay, or rock
  • 13. © 2014 Pearson Education, Inc. Protocells  Replication and metabolism are key properties of life and may have appeared together  Protocells may have been fluid-filled vesicles with a membrane-like structure  In water, lipids and other organic molecules can spontaneously form vesicles with a lipid bilayer
  • 14. © 2014 Pearson Education, Inc.  Adding clay can increase the rate of vesicle formation  Vesicles exhibit simple reproduction and metabolism and maintain an internal chemical environment
  • 15. © 2014 Pearson Education, Inc. Figure 24.4 Vesicle boundary Precursor molecules only 1 µm Relativeturbidity,an indexofvesiclenumber (a) Self-assembly Time (minutes) 0.4 0.2 0 0 20 40 60 Precursor molecules plus montmorillonite clay 20 µm (c) Absorption of RNA(b) Reproduction
  • 16. © 2014 Pearson Education, Inc. Figure 24.4a Precursor molecules only Relativeturbidity,an indexofvesiclenumber Time (minutes) 0.4 0.2 0 0 20 40 60 Precursor molecules plus montmorillonite clay (a) Self-assembly
  • 17. © 2014 Pearson Education, Inc. Figure 24.4b 20 µm (b) Reproduction
  • 18. © 2014 Pearson Education, Inc. Figure 24.4c Vesicle boundary 1 µm (c) Absorption of RNA
  • 19. © 2014 Pearson Education, Inc. Self-Replicating RNA  The first genetic material was probably RNA, not DNA  RNA molecules called ribozymes have been found to catalyze many different reactions  For example, ribozymes can make complementary copies of short stretches of RNA
  • 20. © 2014 Pearson Education, Inc.  Natural selection has produced self-replicating RNA molecules  RNA molecules that were more stable or replicated more quickly would have left the most descendant RNA molecules  The early genetic material might have formed an “RNA world”
  • 21. © 2014 Pearson Education, Inc.  Vesicles with RNA capable of replication would have been protocells  RNA could have provided the template for DNA, a more stable genetic material
  • 22. © 2014 Pearson Education, Inc. Fossil Evidence of Early Life  Many of the oldest fossils are stromatolites, layered rocks that formed from the activities of prokaryotes up to 3.5 billion years ago  Ancient fossils of individual prokaryotic cells have also been discovered  For example, fossilized prokaryotic cells have been found in 3.4-billion-year-old rocks from Australia
  • 23. © 2014 Pearson Education, Inc. Figure 24.5 Time (billions of years ago) 10 µm 30µm 5cm Nonphotosynthetic bacteria Cyanobacteria Stromatolites Possible earliest appearance in fossil record 4 3 2 1 0
  • 24. © 2014 Pearson Education, Inc. Figure 24.5a Time (billions of years ago) Nonphotosynthetic bacteria Cyanobacteria Stromatolites Possible earliest appearance in fossil record 4 3 2 1 0
  • 25. © 2014 Pearson Education, Inc. Figure 24.5b 30µm 3-billion-year-old fossil of a cluster of nonphotosynthetic prokaryote cells
  • 26. © 2014 Pearson Education, Inc. Figure 24.5c 5cm 1.1-billion-year-old fossilized stromatolite
  • 27. © 2014 Pearson Education, Inc. Figure 24.5d 10 µm 1.5-billion-year-old fossil of a cyanobacterium
  • 28. © 2014 Pearson Education, Inc.  The cyanobacteria that form stromatolites were the main photosynthetic organisms for over a billion years  Early cyanobacteria began the release of oxygen into Earth’s atmosphere  Surviving prokaryote lineages either avoided or adapted to the newly aerobic environment
  • 29. © 2014 Pearson Education, Inc. Concept 24.2: Diverse structural and metabolic adaptations have evolved in prokaryotes  Most prokaryotes are unicellular, although some species form colonies  Most prokaryotic cells have diameters of 0.5–5 µm, much smaller than the 10–100 µm diameter of many eukaryotic cells  Prokaryotic cells have a variety of shapes  The three most common shapes are spheres (cocci), rods (bacilli), and spirals
  • 30. © 2014 Pearson Education, Inc. Figure 24.6 3µm (a) Spherical (b) Rod-shaped (c) Spiral 1µm 1µm
  • 31. © 2014 Pearson Education, Inc. Figure 24.6a (a) Spherical 1µm
  • 32. © 2014 Pearson Education, Inc. Figure 24.6b (b) Rod-shaped 1µm
  • 33. © 2014 Pearson Education, Inc. Figure 24.6c 3µm (c) Spiral
  • 34. © 2014 Pearson Education, Inc. Cell-Surface Structures  A key feature of nearly all prokaryotic cells is their cell wall, which maintains cell shape, protects the cell, and prevents it from bursting in a hypotonic environment  Eukaryote cell walls are made of cellulose or chitin  Bacterial cell walls contain peptidoglycan, a network of modified sugars cross-linked by polypeptides
  • 35. © 2014 Pearson Education, Inc.  Archaeal cell walls contain polysaccharides and proteins but lack peptidoglycan  Scientists use the Gram stain to classify bacteria by cell wall composition  Gram-positive bacteria have simpler walls with a large amount of peptidoglycan  Gram-negative bacteria have less peptidoglycan and an outer membrane that can be toxic
  • 36. © 2014 Pearson Education, Inc. Figure 24.7 Peptido- glycan layer Cell wall Gram-negative bacteria 10 µm Gram-positive bacteria (b) Gram-negative bacteria (a) Gram-positive bacteria Plasma membrane Plasma membrane Peptidoglycan layer Cell wall Outer membrane Carbohydrate portion of lipopolysaccharide
  • 37. © 2014 Pearson Education, Inc. Figure 24.7a Peptido- glycan layer Cell wall (a) Gram-positive bacteria Plasma membrane
  • 38. © 2014 Pearson Education, Inc. Figure 24.7b (b) Gram-negative bacteria Plasma membrane Peptidoglycan layer Cell wall Outer membrane Carbohydrate portion of lipopolysaccharide
  • 39. © 2014 Pearson Education, Inc. Figure 24.7c Gram-negative bacteria 10 µm Gram-positive bacteria
  • 40. © 2014 Pearson Education, Inc.  Many antibiotics target peptidoglycan and damage bacterial cell walls  Gram-negative bacteria are more likely to be antibiotic resistant  A polysaccharide or protein layer called a capsule covers many prokaryotes
  • 41. © 2014 Pearson Education, Inc. Figure 24.8 Bacterial cell wall Bacterial capsule Tonsil cell 200 nm
  • 42. © 2014 Pearson Education, Inc.  Some bacteria develop resistant cells called endospores when they lack an essential nutrient  Other bacteria have fimbriae, which allow them to stick to their substrate or other individuals in a colony  Pili (or sex pili) are longer than fimbriae and allow prokaryotes to exchange DNA
  • 43. © 2014 Pearson Education, Inc. Figure 24.9 Fimbriae 1 µm
  • 44. © 2014 Pearson Education, Inc. Motility  In a heterogeneous environment, many bacteria exhibit taxis, the ability to move toward or away from a stimulus  Chemotaxis is the movement toward or away from a chemical stimulus
  • 45. © 2014 Pearson Education, Inc.  Most motile bacteria propel themselves by flagella scattered about the surface or concentrated at one or both ends  Flagella of bacteria, archaea, and eukaryotes are composed of different proteins and likely evolved independently
  • 46. © 2014 Pearson Education, Inc. Figure 24.10 Flagellum Filament 20 nm Hook MotorCell wall Rod Peptidoglycan layer Plasma membrane
  • 47. © 2014 Pearson Education, Inc. Figure 24.10a 20 nm Hook Motor
  • 48. © 2014 Pearson Education, Inc. Evolutionary Origins of Bacterial Flagella  Bacterial flagella are composed of a motor, hook, and filament  Many of the flagella’s proteins are modified versions of proteins that perform other tasks in bacteria  Flagella likely evolved as existing proteins were added to an ancestral secretory system  This is an example of exaptation, where existing structures take on new functions through descent with modification
  • 49. © 2014 Pearson Education, Inc. Internal Organization and DNA  Prokaryotic cells usually lack complex compartmentalization  Some prokaryotes do have specialized membranes that perform metabolic functions  These are usually infoldings of the plasma membrane
  • 50. © 2014 Pearson Education, Inc. Figure 24.11 Respiratory membrane 0.2 µm 1 µm Thylakoid membranes (a) Aerobic prokaryote (b) Photosynthetic prokaryote
  • 51. © 2014 Pearson Education, Inc. Figure 24.11a Respiratory membrane 0.2 µm (a) Aerobic prokaryote
  • 52. © 2014 Pearson Education, Inc. Figure 24.11b 1 µm Thylakoid membranes (b) Photosynthetic prokaryote
  • 53. © 2014 Pearson Education, Inc.  The prokaryotic genome has less DNA than the eukaryotic genome  Most of the genome consists of a circular chromosome  The chromosome is not surrounded by a membrane; it is located in the nucleoid region  Some species of bacteria also have smaller rings of DNA called plasmids
  • 54. © 2014 Pearson Education, Inc. Figure 24.12 Plasmids 1 µm Chromosome
  • 55. © 2014 Pearson Education, Inc.  There are some differences between prokaryotes and eukaryotes in DNA replication, transcription, and translation  These allow people to use some antibiotics to inhibit bacterial growth without harming themselves
  • 56. © 2014 Pearson Education, Inc. Nutritional and Metabolic Adaptations  Prokaryotes can be categorized by how they obtain energy and carbon  Phototrophs obtain energy from light  Chemotrophs obtain energy from chemicals  Autotrophs require CO2 as a carbon source  Heterotrophs require an organic nutrient to make organic compounds
  • 57. © 2014 Pearson Education, Inc.  Energy and carbon sources are combined to give four major modes of nutrition  Photoautotrophy  Chemoautotrophy  Photoheterotrophy  Chemoheterotrophy
  • 58. © 2014 Pearson Education, Inc. Table 24.1
  • 59. © 2014 Pearson Education, Inc. The Role of Oxygen in Metabolism  Prokaryotic metabolism varies with respect to O2  Obligate aerobes require O2 for cellular respiration  Obligate anaerobes are poisoned by O2 and use fermentation or anaerobic respiration, in which substances other than O2 act as electron acceptors  Facultative anaerobes can survive with or without O2
  • 60. © 2014 Pearson Education, Inc. Nitrogen Metabolism  Nitrogen is essential for the production of amino acids and nucleic acids  Prokaryotes can metabolize nitrogen in a variety of ways  In nitrogen fixation, some prokaryotes convert atmospheric nitrogen (N2) to ammonia (NH3)
  • 61. © 2014 Pearson Education, Inc. Metabolic Cooperation  Cooperation between prokaryotes allows them to use environmental resources they could not use as individual cells  In the cyanobacterium Anabaena, photosynthetic cells and nitrogen-fixing cells called heterocysts (or heterocytes) exchange metabolic products
  • 62. © 2014 Pearson Education, Inc. Figure 24.13 20 µm Heterocyst Photosynthetic cells
  • 63. © 2014 Pearson Education, Inc.  In some prokaryotic species, metabolic cooperation occurs in surface-coating colonies called biofilms
  • 64. © 2014 Pearson Education, Inc. Reproduction  Prokaryotes reproduce quickly by binary fission and can divide every 1–3 hours  Key features of prokaryotic biology allow them to divide quickly  They are small  They reproduce by binary fission  They have short generation times
  • 65. © 2014 Pearson Education, Inc. Adaptations of Prokaryotes: A Summary  The ongoing success of prokaryotes is an extraordinary example of physiological and metabolic diversification  Prokaryotic diversification can be viewed as a first great wave of adaptive radiation in the evolutionary history of life
  • 66. © 2014 Pearson Education, Inc.  Prokaryotes have considerable genetic variation  Three factors contribute to this genetic diversity  Rapid reproduction  Mutation  Genetic recombination Concept 24.3: Rapid reproduction, mutation, and genetic recombination promote genetic diversity in prokaryotes
  • 67. © 2014 Pearson Education, Inc. Rapid Reproduction and Mutation  Prokaryotes reproduce by binary fission, and offspring cells are generally identical  Mutation rates during binary fission are low, but because of rapid reproduction, mutations can accumulate rapidly in a population  High diversity from mutations allows for rapid evolution  Prokaryotes are not “primitive” but are highly evolved
  • 68. © 2014 Pearson Education, Inc. Figure 24.14 Experiment 0.1 mL (population sample) Results Daily serial transfer Old tube (discarded after transfer) New tube (9.9 mL growth medium) Populationgrowthrate (relativetoancestral population) Generation 10,000 20,00015,0005,0000 1.8 1.6 1.4 1.2 1.0
  • 69. © 2014 Pearson Education, Inc. Figure 24.14a ResultsPopulationgrowthrate (relativetoancestral population) Generation 10,000 20,00015,0005,0000 1.8 1.6 1.4 1.2 1.0
  • 70. © 2014 Pearson Education, Inc. Genetic Recombination  Genetic recombination, the combining of DNA from two sources, contributes to diversity  Prokaryotic DNA from different individuals can be brought together by transformation, transduction, and conjugation  Movement of genes among individuals from different species is called horizontal gene transfer
  • 71. © 2014 Pearson Education, Inc. Transformation and Transduction  A prokaryotic cell can take up and incorporate foreign DNA from the surrounding environment in a process called transformation  Transduction is the movement of genes between bacteria by bacteriophages (viruses that infect bacteria)
  • 72. © 2014 Pearson Education, Inc. Figure 24.15-1 1 Phage infects bacterial donor cell with A+ and B+ alleles. Donor cell A+ B+ Phage DNA
  • 73. © 2014 Pearson Education, Inc. Figure 24.15-2 2 1 Phage infects bacterial donor cell with A+ and B+ alleles. Phage DNA is replicated and proteins synthesized. Donor cell A+ B+ A+ B+ Phage DNA
  • 74. © 2014 Pearson Education, Inc. Figure 24.15-3 3 2 1 Phage infects bacterial donor cell with A+ and B+ alleles. Phage DNA is replicated and proteins synthesized. Fragment of DNA with A+ allele is packaged within a phage capsid. Donor cell A+ A+ B+ A+ B+ Phage DNA
  • 75. © 2014 Pearson Education, Inc. 4 3 2 1 Phage infects bacterial donor cell with A+ and B+ alleles. Phage DNA is replicated and proteins synthesized. Fragment of DNA with A+ allele is packaged within a phage capsid. Phage with A+ allele infects bacterial recipient cell. Recipient cell Crossing over Donor cell A− B− A+ A+ A+ B+ A+ B+ Phage DNA Figure 24.15-4
  • 76. © 2014 Pearson Education, Inc. Figure 24.15-5 Phage infects bacterial donor cell with A+ and B+ alleles. Incorporation of phage DNA creates recombinant cell with genotype A+ B+ . Phage DNA is replicated and proteins synthesized. Fragment of DNA with A+ allele is packaged within a phage capsid. Phage with A+ allele infects bacterial recipient cell. Recombinant cell Recipient cell Crossing over Donor cell A+ B− A− B− A+ A+ A+ B+ A+ B+ Phage DNA 5 4 3 2 1
  • 77. © 2014 Pearson Education, Inc. Conjugation and Plasmids  Conjugation is the process where genetic material is transferred between prokaryotic cells  In bacteria, the DNA transfer is one way  In E. coli, the donor cell attaches to a recipient by a pilus, pulls it closer, and transfers DNA
  • 78. © 2014 Pearson Education, Inc. Figure 24.16 Sex pilus 1 µm
  • 79. © 2014 Pearson Education, Inc.  The F factor is a piece of DNA required for the production of pili  Cells containing the F plasmid (F+ ) function as DNA donors during conjugation  Cells without the F factor (F– ) function as DNA recipients during conjugation  The F factor is transferable during conjugation
  • 80. © 2014 Pearson Education, Inc. Figure 24.17-1 1 One strand of F+ cell plasmid DNA breaks at arrowhead. Bacterial chromosome Bacterial chromosome F plasmid Mating bridge F+ cell (donor) F− cell (recipient)
  • 81. © 2014 Pearson Education, Inc. Figure 24.17-2 21 One strand of F+ cell plasmid DNA breaks at arrowhead. Bacterial chromosome Bacterial chromosome F plasmid Mating bridge F+ cell (donor) F− cell (recipient) Broken strand peels off and enters F− cell.
  • 82. © 2014 Pearson Education, Inc. Figure 24.17-3 321 One strand of F+ cell plasmid DNA breaks at arrowhead. Bacterial chromosome Bacterial chromosome F plasmid Mating bridge F+ cell (donor) F− cell (recipient) Broken strand peels off and enters F− cell. Donor and recipient cells synthesize complementary DNA strands.
  • 83. © 2014 Pearson Education, Inc. Figure 24.17-4 4321 One strand of F+ cell plasmid DNA breaks at arrowhead. Bacterial chromosome Bacterial chromosome F plasmid Mating bridge F+ cell (donor) F− cell (recipient) F+ cell F+ cell Broken strand peels off and enters F− cell. Recipient cell is now a recombinant F+ cell. Donor and recipient cells synthesize complementary DNA strands.
  • 84. © 2014 Pearson Education, Inc.  The F factor can also be integrated into the chromosome  A cell with the F factor built into its chromosomes functions as a donor during conjugation  The recipient becomes a recombinant bacterium, with DNA from two different cells
  • 85. © 2014 Pearson Education, Inc. R Plasmids and Antibiotic Resistance  Genes for antibiotic resistance are carried in R plasmids  Antibiotics kill sensitive bacteria, but not bacteria with specific R plasmids  Through natural selection, the fraction of bacteria with genes for resistance increases in a population exposed to antibiotics  Antibiotic-resistant strains of bacteria are becoming more common
  • 86. © 2014 Pearson Education, Inc. Concept 24.4: Prokaryotes have radiated into a diverse set of lineages  Prokaryotes have radiated extensively due to diverse structural and metabolic adaptations  Prokaryotes inhabit every environment known to support life
  • 87. © 2014 Pearson Education, Inc. An Overview of Prokaryotic Diversity  Applying molecular systematics to the investigation of prokaryotic phylogeny has produced dramatic results  Molecular systematics led to the splitting of prokaryotes into bacteria and archaea  Molecular systematists continue to work on the phylogeny of prokaryotes
  • 88. © 2014 Pearson Education, Inc. Figure 24.18 UNIVERSAL ANCESTOR Domain Eukarya Gram-positive bacteria Cyanobacteria Spirochetes Chlamydias Proteobacteria Nanoarchaeotes Crenarchaeotes Euryarchaeotes Korarchaeotes Eukaryotes DomainArchaeaDomainBacteria
  • 89. © 2014 Pearson Education, Inc.  The use of polymerase chain reaction (PCR) has allowed for more rapid sequencing of prokaryote genomes  A handful of soil may contain 10,000 prokaryotic species  Horizontal gene transfer between prokaryotes obscures the root of the tree of life
  • 90. © 2014 Pearson Education, Inc. Bacteria  Bacteria include the vast majority of prokaryotes familiar to most people  Diverse nutritional types are scattered among the major groups of bacteria Video: Tubeworms
  • 91. © 2014 Pearson Education, Inc. Figure 24.UN01 Eukarya Bacteria Archaea
  • 92. © 2014 Pearson Education, Inc. Figure 24.19a Alpha subgroup Beta subgroup Gamma subgroup Delta subgroup Epsilon subgroup Rhizobium (arrows) (TEM) Nitrosomonas (TEM) Thiomargarita namibiensis (LM) Helicobacter pylori (TEM) Chondromyces crocatus (SEM) Proteo- bacteria Alpha Beta Gamma Delta Epsilon 2.5µm 1µm2µm 300µm 200µm
  • 93. © 2014 Pearson Education, Inc.  Proteobacteria are gram-negative bacteria including photoautotrophs, chemoautotrophs, and heterotrophs  Some are anaerobic and others aerobic
  • 94. © 2014 Pearson Education, Inc. Figure 24.19aa Proteobacteria Alpha Beta Gamma Delta Epsilon
  • 95. © 2014 Pearson Education, Inc.  Members of the subgroup alpha proteobacteria are closely associated with eukaryotic hosts in many cases  Scientists hypothesize that mitochondria evolved from aerobic alpha proteobacteria through endosymbiosis  Example: Rhizobium, which forms root nodules in legumes and fixes atmospheric N2  Example: Agrobacterium, which produces tumors in plants and is used in genetic engineering
  • 96. © 2014 Pearson Education, Inc. Figure 24.19ab Alpha subgroup Rhizobium (arrows) inside a root cell of a legume (TEM) 2.5µm
  • 97. © 2014 Pearson Education, Inc.  Members of the subgroup beta proteobacteria are nutritionally diverse  Example: the soil bacterium Nitrosomonas, which converts NH4 + to NO2 –
  • 98. © 2014 Pearson Education, Inc. Figure 24.19ac Beta subgroup Nitrosomonas (colorized TEM) 1µm
  • 99. © 2014 Pearson Education, Inc.  The subgroup gamma proteobacteria includes sulfur bacteria such as Thiomargarita namibiensis and pathogens such as Legionella, Salmonella, and Vibrio cholerae  Escherichia coli resides in the intestines of many mammals and is not normally pathogenic
  • 100. © 2014 Pearson Education, Inc. Figure 24.19ad Gamma subgroup Thiomargarita namibiensis containing sulfur wastes (LM) 200µm
  • 101. © 2014 Pearson Education, Inc.  The subgroup delta proteobacteria includes the slime-secreting myxobacteria and bdellovibrios, a bacteria that attacks other bacteria
  • 102. © 2014 Pearson Education, Inc. Figure 24.19ae Delta subgroup Fruiting bodies of Chondromyces crocatus, a myxobacterium (SEM) 300µm
  • 103. © 2014 Pearson Education, Inc.  The subgroup epsilon proteobacteria contains many pathogens including Campylobacter, which causes blood poisoning, and Helicobacter pylori, which causes stomach ulcers
  • 104. © 2014 Pearson Education, Inc. Figure 24.19af Epsilon subgroup Helicobacter pylori (colorized TEM) 2µm
  • 105. © 2014 Pearson Education, Inc. Figure 24.19b Spirochetes Cyanobacteria Gram-positive bacteria Chlamydias Leptospira (TEM) Oscillatoria Streptomyces (SEM) Chlamydia (arrows) (TEM) Mycoplasmas (SEM) 2.5µm 40µm 5µm2µm 5µm
  • 106. © 2014 Pearson Education, Inc.  Chlamydias are parasites that live within animal cells  Chlamydia trachomatis causes blindness and nongonococcal urethritis by sexual transmission
  • 107. © 2014 Pearson Education, Inc. Figure 24.19ba Chlamydias Chlamydia (arrows) inside an animal cell (colorized TEM) 2.5µm
  • 108. © 2014 Pearson Education, Inc.  Spirochetes are helical heterotrophs  Some are parasites, including Treponema pallidum, which causes syphilis, and Borrelia burgdorferi, which causes Lyme disease
  • 109. © 2014 Pearson Education, Inc. Figure 24.19bb Spirochetes Leptospira, a spirochete (colorized TEM) 5µm
  • 110. © 2014 Pearson Education, Inc.  Cyanobacteria are photoautotrophs that generate O2  Plant chloroplasts likely evolved from cyanobacteria by the process of endosymbiosis
  • 111. © 2014 Pearson Education, Inc. Figure 24.19bc Cyanobacteria Oscillatoria, a filamentous cyanobacterium 40µm
  • 112. © 2014 Pearson Education, Inc.  Gram-positive bacteria include  Actinomycetes, which decompose soil  Streptomyces, which are a source of antibiotics  Bacillus anthracis, the cause of anthrax  Clostridium botulinum, the cause of botulism  Some Staphylococcus and Streptococcus, which can be pathogenic  Mycoplasms, the smallest known cells
  • 113. © 2014 Pearson Education, Inc. Figure 24.19bd Gram-positive bacteria Streptomyces, the source of many antibiotics (SEM) 5µm
  • 114. © 2014 Pearson Education, Inc. Figure 24.19be Gram-positive bacteria Hundreds of mycoplasmas covering a human fibroblast cell (colorized SEM) 2µm
  • 115. © 2014 Pearson Education, Inc. Archaea  Archaea share certain traits with bacteria and other traits with eukaryotes
  • 116. © 2014 Pearson Education, Inc. Figure 24.UN02 Eukarya Bacteria Archaea
  • 117. © 2014 Pearson Education, Inc. Table 24.2
  • 118. © 2014 Pearson Education, Inc. Table 24.2a
  • 119. © 2014 Pearson Education, Inc. Table 24.2b
  • 120. © 2014 Pearson Education, Inc.  Some archaea live in extreme environments and are called extremophiles  Extreme halophiles live in highly saline environments  Extreme thermophiles thrive in very hot environments Video: Cyanobacteria (Oscillatoria)
  • 121. © 2014 Pearson Education, Inc. Figure 24.20
  • 122. © 2014 Pearson Education, Inc.  Methanogens produce methane as a waste product  Methanogens are strict anaerobes and are poisoned by O2  Methanogens live in swamps and marshes, in the guts of cattle, and near deep-sea hydrothermal vents
  • 123. © 2014 Pearson Education, Inc. Figure 24.21 2 µm
  • 124. © 2014 Pearson Education, Inc. Figure 24.21a
  • 125. © 2014 Pearson Education, Inc. Figure 24.21b 2 µm
  • 126. © 2014 Pearson Education, Inc.  Recent metagenomic studies have revealed many new groups of archaea  Some of these may offer clues to the early evolution of life on Earth
  • 127. © 2014 Pearson Education, Inc. Concept 24.5: Prokaryotes play crucial roles in the biosphere  Prokaryotes are so important that if they were to disappear, the prospects for any other life surviving would be dim
  • 128. © 2014 Pearson Education, Inc. Chemical Recycling  Prokaryotes play a major role in the recycling of chemical elements between the living and nonliving components of ecosystems  Chemoheterotrophic prokaryotes function as decomposers, breaking down dead organisms and waste products
  • 129. © 2014 Pearson Education, Inc.  Prokaryotes can sometimes increase the availability of nitrogen, phosphorus, and potassium for plant growth  Prokaryotes can also “immobilize” or decrease the availability of nutrients
  • 130. © 2014 Pearson Education, Inc. Figure 24.22 Seedlings growing in the lab Soil treatment UptakeofKbyplants(mg) Strain 1 Strain 2 Strain 3No bacteria 1.0 0.8 0.6 0.4 0.2 0
  • 131. © 2014 Pearson Education, Inc. Figure 24.22a Seedlings growing in the lab
  • 132. © 2014 Pearson Education, Inc. Ecological Interactions  Symbiosis is an ecological relationship in which two species live in close contact: a larger host and smaller symbiont  Prokaryotes often form symbiotic relationships with larger organisms
  • 133. © 2014 Pearson Education, Inc.  In mutualism, both symbiotic organisms benefit  In commensalism, one organism benefits while neither harming nor helping the other in any significant way  In parasitism, an organism called a parasite harms but does not kill its host  Parasites that cause disease are called pathogens
  • 134. © 2014 Pearson Education, Inc. Figure 24.23
  • 135. © 2014 Pearson Education, Inc.  The ecological communities of hydrothermal vents depend on chemoautotrophic bacteria for energy
  • 136. © 2014 Pearson Education, Inc. Impact on Humans  The best-known prokaryotes are pathogens, but many others have positive interactions with humans
  • 137. © 2014 Pearson Education, Inc. Mutualistic Bacteria  Human intestines are home to about 500–1,000 species of bacteria  Many of these are mutualists and break down food that is undigested by our intestines
  • 138. © 2014 Pearson Education, Inc. Pathogenic Bacteria  Prokaryotes cause about half of all human diseases  For example, Lyme disease is caused by a bacterium and carried by ticks
  • 139. © 2014 Pearson Education, Inc. Figure 24.24 5 µm
  • 140. © 2014 Pearson Education, Inc. Figure 24.24a
  • 141. © 2014 Pearson Education, Inc. Figure 24.24b
  • 142. © 2014 Pearson Education, Inc. Figure 24.24c 5 µm
  • 143. © 2014 Pearson Education, Inc.  Pathogenic prokaryotes typically cause disease by releasing exotoxins or endotoxins  Exotoxins are secreted and cause disease even if the prokaryotes that produce them are not present  Endotoxins are released only when bacteria die and their cell walls break down
  • 144. © 2014 Pearson Education, Inc.  Horizontal gene transfer can spread genes associated with virulence  For example, pathogenic strains of the normally harmless E. coli bacteria have emerged through horizontal gene transfer
  • 145. © 2014 Pearson Education, Inc. Prokaryotes in Research and Technology  Experiments using prokaryotes have led to important advances in DNA technology  For example, E. coli is used in gene cloning  For example, Agrobacterium tumefaciens is used to produce transgenic plants
  • 146. © 2014 Pearson Education, Inc.  Bacteria can now be used to make natural plastics  Prokaryotes are the principal agents in bioremediation, the use of organisms to remove pollutants from the environment  Bacteria can be engineered to produce vitamins, antibiotics, and hormones  Bacteria are also being engineered to produce ethanol from waste biomass
  • 147. © 2014 Pearson Education, Inc. Figure 24.25 (a) (b)
  • 148. © 2014 Pearson Education, Inc. Figure 24.25a (a)
  • 149. © 2014 Pearson Education, Inc. Figure 24.25b (b)
  • 150. © 2014 Pearson Education, Inc. Figure 24.26
  • 151. © 2014 Pearson Education, Inc. Figure 24.UN03
  • 152. © 2014 Pearson Education, Inc. Figure 24.UN04 Fimbriae Cell wall Capsule Flagella Sex pilus Internal organization Circular chromosome
  • 153. © 2014 Pearson Education, Inc. Figure 24.UN05

Editor's Notes

  1. Figure 24.1 What organisms lived on early Earth?
  2. Figure 24.2 Bacteria that inhabit the human body
  3. Figure 24.3 Amino acid synthesis in a simulated volcanic eruption
  4. Figure 24.3a Amino acid synthesis in a simulated volcanic eruption (photo)
  5. Figure 24.4 Features of abiotically produced vesicles
  6. Figure 24.4a Features of abiotically produced vesicles (part 1: self-assembly)
  7. Figure 24.4b Features of abiotically produced vesicles (part 2: reproduction)
  8. Figure 24.4c Features of abiotically produced vesicles (part 3: absorption of RNA)
  9. Figure 24.5 Appearance in the fossil record of early prokaryote groups
  10. Figure 24.5a Appearance in the fossil record of early prokaryote groups (part 1: graph)
  11. Figure 24.5b Appearance in the fossil record of early prokaryote groups (part 2: nonphotosynthetic bacteria)
  12. Figure 24.5c Appearance in the fossil record of early prokaryote groups (part 3: stromatolite)
  13. Figure 24.5d Appearance in the fossil record of early prokaryote groups (part 4: cyanobacterium)
  14. Figure 24.6 The most common shapes of prokaryotes
  15. Figure 24.6a The most common shapes of prokaryotes (part 1: spherical)
  16. Figure 24.6b The most common shapes of prokaryotes (part 2: rod-shaped)
  17. Figure 24.6c The most common shapes of prokaryotes (part 3: spiral)
  18. Figure 24.7 Gram staining
  19. Figure 24.7a Gram staining (part 1: Gram-positive)
  20. Figure 24.7b Gram staining (part 2: Gram-negative)
  21. Figure 24.7c Gram staining (part 3: micrograph)
  22. Figure 24.8 Capsule
  23. Figure 24.9 Fimbriae
  24. Figure 24.10 A prokaryotic flagellum
  25. Figure 24.10a A prokaryotic flagellum (TEM)
  26. Figure 24.11 Specialized membranes of prokaryotes
  27. Figure 24.11a Specialized membranes of prokaryotes (part 1: aerobic)
  28. Figure 24.11b Specialized membranes of prokaryotes (part 2: photosynthetic)
  29. Figure 24.12 A prokaryotic chromosome and plasmids
  30. Table 24.1 Major nutritional modes
  31. Figure 24.13 Metabolic cooperation in a prokaryote
  32. Figure 24.14 Inquiry: Can prokaryotes evolve rapidly in response to environmental change?
  33. Figure 24.14a Inquiry: Can prokaryotes evolve rapidly in response to environmental change? (results)
  34. Figure 24.15-1 Transduction (step 1)
  35. Figure 24.15-2 Transduction (step 2)
  36. Figure 24.15-3 Transduction (step 3)
  37. Figure 24.15-4 Transduction (step 4)
  38. Figure 24.15-5 Transduction (step 5)
  39. Figure 24.16 Bacterial conjugation
  40. Figure 24.17-1 Conjugation and transfer of an F plasmid, resulting in recombination (step 1)
  41. Figure 24.17-2 Conjugation and transfer of an F plasmid, resulting in recombination (step 2)
  42. Figure 24.17-3 Conjugation and transfer of an F plasmid, resulting in recombination (step 3)
  43. Figure 24.17-4 Conjugation and transfer of an F plasmid, resulting in recombination (step 4)
  44. Figure 24.18 A simplified phylogeny of prokaryotes
  45. Figure 24.UN01 In-text figure, bacteria mini-tree, p. 471
  46. Figure 24.19a Exploring major groups of bacteria (part 1)
  47. Figure 24.19aa Exploring major groups of bacteria (part 1a: proteobacteria tree)
  48. Figure 24.19ab Exploring major groups of bacteria (part 1b: alpha subgroup)
  49. Figure 24.19ac Exploring major groups of bacteria (part 1c: beta subgroup)
  50. Figure 24.19ad Exploring major groups of bacteria (part 1d: gamma subgroup)
  51. Figure 24.19ae Exploring major groups of bacteria (part 1e: delta subgroup)
  52. Figure 24.19af Exploring major groups of bacteria (part 1f: epsilon subgroup)
  53. Figure 24.19b Exploring major groups of bacteria (part 2)
  54. Figure 24.19ba Exploring major groups of bacteria (part 2a: chlamydias)
  55. Figure 24.19bb Exploring major groups of bacteria (part 2b: spirochetes)
  56. Figure 24.19bc Exploring major groups of bacteria (part 2c: cyanobacteria)
  57. Figure 24.19bd Exploring major groups of bacteria (part 2d: Gram-positive, Streptomyces)
  58. Figure 24.19be Exploring major groups of bacteria (part 2e: Gram-positive, mycoplasmas)
  59. Figure 24.UN02 In-text figure, Archaea mini-tree, p. 471
  60. Table 24.2 A comparison of the three domains of life
  61. Table 24.2a A comparison of the three domains of life (part 1)
  62. Table 24.2b A comparison of the three domains of life (part 2)
  63. Figure 24.20 Extreme thermophiles
  64. Figure 24.21 A highly thermophilic methanogen
  65. Figure 24.21a A highly thermophilic methanogen (part 1: photo)
  66. Figure 24.21b A highly thermophilic methanogen (part 2: micrograph)
  67. Figure 24.22 Impact of bacteria on soil nutrient availability
  68. Figure 24.22a Impact of bacteria on soil nutrient availability (photo)
  69. Figure 24.23 Mutualism: bacterial “headlights”
  70. Figure 24.24 Lyme disease
  71. Figure 24.24a Lyme disease (part 1: tick)
  72. Figure 24.24b Lyme disease (part 2: rash)
  73. Figure 24.24c Lyme disease (part 3: SEM)
  74. Figure 24.25 Products from prokaryotes
  75. Figure 24.25a Products from prokaryotes (part 1: PHA)
  76. Figure 24.25b Products from prokaryotes (part 2: E-85)
  77. Figure 24.26 Bioremediation of an oil spill
  78. Figure 24.UN03 Skills exercise: making a bar graph and interpreting data
  79. Figure 24.UN04 Summary of key concepts: prokaryote adaptations
  80. Figure 24.UN05 Test your understanding, question 8 (mutualism)