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birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
birgHPC MOSC2011
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birgHPC MOSC2011

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  • 1. birgHPC Creating Instant Computing Clusters for Bioinformatics and Molecular Dynamics Chew Teong Han Bioinformatics Research Group Faculty of Biosciences & Bioengineering Universiti Teknologi Malaysia
  • 2. bi rg Team
  • 3. Introduction
  • 4. Beowulf circa 1996 NASA/CESDIS US History
  • 5. PS3s circa 2007 NCSU US
  • 6. Tienhe-1A circa 2010 NSC China
  • 7. Motivations
  • 8. Daytime ~Full load Night time/ Holidays ~Idle
  • 9. Solution + { something } = - - -
  • 10. bi rg HPC +
  • 11. Features <ul><li>Required only one CD/flash drive on head node
  • 12. Use netboot image to boot compute nodes
  • 13. Auto config of SSH, firewall, IP, apache, home directory detection, slots detection, …
  • 14. Include parallel-enabled compilers, libraries
  • 15. Include parallel-ready bioinformatics suite: Gromacs, NAMD, mpiBLAST & ClustalW-MPI
  • 16. Ganglia cluster monitoring
  • 17. Include job script </li></ul>
  • 18.  
  • 19.  
  • 20.  
  • 21.  
  • 22.  
  • 23.  
  • 24.  
  • 25.  
  • 26. Availability http://birg1.fbb.utm.my/birghpc
  • 27. http://sourceforge.net/projects/birghpc/
  • 28. Oxford Bioinformatics
  • 29. Acknowledgment <ul><li>Team members </li><ul><li>Dr Shahir Shamsir Omar
  • 30. Joyce Tan Kwee Hong
  • 31. Farizuwana Akma binti Zulkifle </li></ul><li>Funding </li><ul><li>MOSTI TechnoFund vote 79910 </li></ul><li>Facilities </li><ul><li>Universiti Teknologi Malaysia </li></ul></ul>
  • 32. Contact Us <ul><li>Dr Mohd Shahir Shamsir Omar </li><ul><li>[email_address]
  • 33. [email_address] </li></ul><li>Chew Teong Han </li><ul><li>[email_address]
  • 34. [email_address] </li></ul></ul>

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