birgHPC MOSC2011
Upcoming SlideShare
Loading in...5
×

Like this? Share it with your network

Share
  • Full Name Full Name Comment goes here.
    Are you sure you want to
    Your message goes here
    Be the first to comment
    Be the first to like this
No Downloads

Views

Total Views
543
On Slideshare
543
From Embeds
0
Number of Embeds
0

Actions

Shares
Downloads
7
Comments
0
Likes
0

Embeds 0

No embeds

Report content

Flagged as inappropriate Flag as inappropriate
Flag as inappropriate

Select your reason for flagging this presentation as inappropriate.

Cancel
    No notes for slide

Transcript

  • 1. birgHPC Creating Instant Computing Clusters for Bioinformatics and Molecular Dynamics Chew Teong Han Bioinformatics Research Group Faculty of Biosciences & Bioengineering Universiti Teknologi Malaysia
  • 2. bi rg Team
  • 3. Introduction
  • 4. Beowulf circa 1996 NASA/CESDIS US History
  • 5. PS3s circa 2007 NCSU US
  • 6. Tienhe-1A circa 2010 NSC China
  • 7. Motivations
  • 8. Daytime ~Full load Night time/ Holidays ~Idle
  • 9. Solution + { something } = - - -
  • 10. bi rg HPC +
  • 11. Features
    • Required only one CD/flash drive on head node
    • 12. Use netboot image to boot compute nodes
    • 13. Auto config of SSH, firewall, IP, apache, home directory detection, slots detection, …
    • 14. Include parallel-enabled compilers, libraries
    • 15. Include parallel-ready bioinformatics suite: Gromacs, NAMD, mpiBLAST & ClustalW-MPI
    • 16. Ganglia cluster monitoring
    • 17. Include job script
  • 18.  
  • 19.  
  • 20.  
  • 21.  
  • 22.  
  • 23.  
  • 24.  
  • 25.  
  • 26. Availability http://birg1.fbb.utm.my/birghpc
  • 27. http://sourceforge.net/projects/birghpc/
  • 28. Oxford Bioinformatics
  • 29. Acknowledgment
    • Team members
      • Dr Shahir Shamsir Omar
      • 30. Joyce Tan Kwee Hong
      • 31. Farizuwana Akma binti Zulkifle
    • Funding
      • MOSTI TechnoFund vote 79910
    • Facilities
      • Universiti Teknologi Malaysia
  • 32. Contact Us
    • Dr Mohd Shahir Shamsir Omar
      • [email_address]
      • 33. [email_address]
    • Chew Teong Han
      • [email_address]
      • 34. [email_address]