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Soil Biology
         Ms. Robyn Stroup
Associate Professor of Biology, TCC
      Master Gardener, OSU
Why Compost?
• Compost is a great way to create a
  natural soil conditioner.

• Composting is copying what Mother
  Nature is conducting in natural
  environments.
Anyone can create compost!


• Either outside in a pile or bin.

• Or inside with a little help from
  composting worms.
Soil, aka Dirt
• Soil is the top layer of the Earth’s
  surface.
• Gardeners are primarily interested in
  the top 6-16 inches of soil.
Looking at soil contents
• Various sizes of rock. From clay particles
  to sand to gravel to rocks.
• Organic matter such as dead plant
  material.
• Water which can become depleted
  (drought) or saturated (flooding).
• Oxygen – if not compacted or flooded.
• Living organisms – micro to macro.
• It’s a complex ecosystem and It’s Alive!!!!
What does soil do?
• It holds plants up.
• Makes food for plants.
• Helps rain and snow soak into the
  ground.
• Provides a home for lots of organisms.
• In most ecosystems, more life and
  diversity lives underground than above.
Soil Communities

• Help cycle nutrients through the
  environment.

• Decomposition – help rot dead plants and
  animals to recycle nutrients.

• Degrade pollutants before they reach
  groundwater or surface water.

• Each organism carries out a function that
  contributes to the entire ecosystem.
Bacteria
• Bacteria are microscopic one-celled
  organisms that aren’t plants or animals.




 Photo Credit: Michael T. Holmes, Oregon State University, Corvallis.
Bacteria
• Bacteria help rot dead plants and
  animals to recycle nutrients into plant
  food.

• They help make nitrogen (a plant food)
  for plants.

• Some live free in the soil; others grow
  on the roots of plants (legumes).
Bacteria

• One cup of soil can hold as many bacteria
  as there are people on Earth


    That’s over 6 billion!
• The weight of all bacteria in 1 acre (about
  the size of a football field) can equal the
  weight of one or two cows.
Fungi
• Fungi help plants get food and
  water from the soil.
• Other fungi help rot dead plants to
  recycle nutrients.
• A teaspoon of farm soil or
  grassland may contain tens of yards
  of fungi.
• The same amount of soil from a
  coniferous forest may hold tens of
  miles of fungi.
Fungi grow in threads called hyphae.




Fungal hyphae, http://serendip.brynmawr.edu/exchange/wfrankli/classification.problem/mycology
Some fungi produce large above
     ground structures.
Actinomycetes
• Have cells like bacteria, but grow in
  threads like fungi.
• Help degrade tough materials, like
  cellulose, for bacteria to further
  degrade.
• Source of the antibiotic Streptomycin.
• Produce geosmin – that wonderful
  “earthy” smell of fresh plowed ground.
Actinomycetes
Protozoa
• Are tiny animals that feed on bacteria
  and move through the soil.

• When they eat bacteria, they help
  release nutrients for plants to use.

• Some live in termite guts and help
  digest wood fibers.
Protozoans




Flagellate soil protozoa.                                                      Ciliate soil protozoa eat tens of thousands of bacteria daily.

Photo credit: Wilhelm Foissner, Institute of Zoology, University of Salzburg
Nematodes
• Tiny roundworms that are common in
  farm or grassland soils.

• Some are serious pests, but many help
  provide plant food for plants

• They help mix up the soil.

• 5,000 soil species have been described.
Nematodes




Plant-parasitic and non-parasitic nematodes recovered from soil by sieving. (Greg Tylka)
Arthropods
• Don’t have a backbone, but do have
  jointed legs.

• They include
  ants, termites, spiders, mites, centipede
  s, millipedes and many others.

• They stir up the soil so it gets more air
  and moves nutrients around.
Arthropods

• They chew up dead plants into tiny pieces
  for bacteria and fungi.

• When you take a step in a forest, you are
  being held up on the backs of thousands of
  bugs.


        How cool is that?!!!!!!!
Arthropods




Image source : http://macromite.wordpress.com/2009/04/29/a-menagerie-of-microarthropods
Earthworms
• Some live on the surface in leaf
  litter, some lie just beneath the
  surface, some burrow deep in the soil.
• As they move around, they move organic
  material from the soil surface to the lower
  layers.
• They also create cavities for air and water
  to move.
• Where earthworms are active, they can
  turn over the top 6 inches of soil in 10-20
  years.
Earthworm




© Robert Pickett/Corbis
Small Scale Vermicomposting
• Common earthworms won’t work!
• Need red wigglers or African red worms.
• Can’t tolerate extreme temperatures.
• Works quite well in small living spaces.
• Takes several months to create worm
  compost.
• A great additive to potting soil!
• Worm tea is also a benefit to watering
  plants.
Organisms living in soil
Making compost is managing a
         microbe farm.
• All it takes is food, air, and water.
• The food needs to be balanced.
• Principal concerns are carbon and
  nitrogen.
• Water and oxygen are also necessary.

• The microbes will do the rest!
Diversity is best!
• Nutrient diversity - balanced diet.

• Biological diversity – inoculum to get
  started.

• Particle size diversity- prevents
  compaction and allows for aeration.

• Water content – not too wet or too dry.
Carbon vs. Nitrogen
• Carbon sources are leaves, straw, and
  wood shavings.

• Nitrogen sources are manure and plant
  material.

• Try to maintain a 3:1 ratio of Carbon to
  Nitrogen.
Air
• Develops faster when turned.
• Compaction results in anaerobic zones
  that will create bad odors.
• Varied particle size will help prevent
  compaction.
• Large 4” PVC pipe drilled with holes and
  placed in center can help.
Water
• Microbes need water.

• Good when you can squeeze a hand full and it
  stays together.

• Too much can cause it to smell.

• Too little can slow it down and likely not
  compost evenly.

• Don’t count on rainfall to be adequate!
Temperature
• Compost must heat to develop properly.
• Center of pile can reach above 130 F.
• Too hot for a human hand.
• Test temperature by placing hand in
  pile. If too hot, then aeration is
  necessary to bring temperature down.
• If not heating, then may be too dry or
  not enough nitrogen present.
pH
• pH is a measure of acidity or alkalinity
• The ideal pH is <7.5
• The pH will decline as the compost
  matures.
• For home gardeners, testing is usually
  not necessary.
Adding compost to soil
• Spread on soil surface and turn into the
  top 6 inches.
• Mix with potting soil or use to make
  your own potting soil.
• Additional mulch added on top is
  necessary to help hold in moisture.
Benefits of adding compost
• Rebuilds soil structure.

• Improves clay soil.

• Slows rain run-off.

• Increases water holding capacity.

• Releases nutrients at a slow rate.
Adding compost creates healthy soil.
The End


Thank you!

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Compost Biology

  • 1. Soil Biology Ms. Robyn Stroup Associate Professor of Biology, TCC Master Gardener, OSU
  • 2. Why Compost? • Compost is a great way to create a natural soil conditioner. • Composting is copying what Mother Nature is conducting in natural environments.
  • 3. Anyone can create compost! • Either outside in a pile or bin. • Or inside with a little help from composting worms.
  • 4. Soil, aka Dirt • Soil is the top layer of the Earth’s surface. • Gardeners are primarily interested in the top 6-16 inches of soil.
  • 5. Looking at soil contents • Various sizes of rock. From clay particles to sand to gravel to rocks. • Organic matter such as dead plant material. • Water which can become depleted (drought) or saturated (flooding). • Oxygen – if not compacted or flooded. • Living organisms – micro to macro. • It’s a complex ecosystem and It’s Alive!!!!
  • 6. What does soil do? • It holds plants up. • Makes food for plants. • Helps rain and snow soak into the ground. • Provides a home for lots of organisms. • In most ecosystems, more life and diversity lives underground than above.
  • 7. Soil Communities • Help cycle nutrients through the environment. • Decomposition – help rot dead plants and animals to recycle nutrients. • Degrade pollutants before they reach groundwater or surface water. • Each organism carries out a function that contributes to the entire ecosystem.
  • 8. Bacteria • Bacteria are microscopic one-celled organisms that aren’t plants or animals. Photo Credit: Michael T. Holmes, Oregon State University, Corvallis.
  • 9. Bacteria • Bacteria help rot dead plants and animals to recycle nutrients into plant food. • They help make nitrogen (a plant food) for plants. • Some live free in the soil; others grow on the roots of plants (legumes).
  • 10. Bacteria • One cup of soil can hold as many bacteria as there are people on Earth That’s over 6 billion! • The weight of all bacteria in 1 acre (about the size of a football field) can equal the weight of one or two cows.
  • 11. Fungi • Fungi help plants get food and water from the soil. • Other fungi help rot dead plants to recycle nutrients. • A teaspoon of farm soil or grassland may contain tens of yards of fungi. • The same amount of soil from a coniferous forest may hold tens of miles of fungi.
  • 12. Fungi grow in threads called hyphae. Fungal hyphae, http://serendip.brynmawr.edu/exchange/wfrankli/classification.problem/mycology
  • 13. Some fungi produce large above ground structures.
  • 14. Actinomycetes • Have cells like bacteria, but grow in threads like fungi. • Help degrade tough materials, like cellulose, for bacteria to further degrade. • Source of the antibiotic Streptomycin. • Produce geosmin – that wonderful “earthy” smell of fresh plowed ground.
  • 16. Protozoa • Are tiny animals that feed on bacteria and move through the soil. • When they eat bacteria, they help release nutrients for plants to use. • Some live in termite guts and help digest wood fibers.
  • 17. Protozoans Flagellate soil protozoa. Ciliate soil protozoa eat tens of thousands of bacteria daily. Photo credit: Wilhelm Foissner, Institute of Zoology, University of Salzburg
  • 18. Nematodes • Tiny roundworms that are common in farm or grassland soils. • Some are serious pests, but many help provide plant food for plants • They help mix up the soil. • 5,000 soil species have been described.
  • 19. Nematodes Plant-parasitic and non-parasitic nematodes recovered from soil by sieving. (Greg Tylka)
  • 20. Arthropods • Don’t have a backbone, but do have jointed legs. • They include ants, termites, spiders, mites, centipede s, millipedes and many others. • They stir up the soil so it gets more air and moves nutrients around.
  • 21. Arthropods • They chew up dead plants into tiny pieces for bacteria and fungi. • When you take a step in a forest, you are being held up on the backs of thousands of bugs. How cool is that?!!!!!!!
  • 22. Arthropods Image source : http://macromite.wordpress.com/2009/04/29/a-menagerie-of-microarthropods
  • 23. Earthworms • Some live on the surface in leaf litter, some lie just beneath the surface, some burrow deep in the soil. • As they move around, they move organic material from the soil surface to the lower layers. • They also create cavities for air and water to move. • Where earthworms are active, they can turn over the top 6 inches of soil in 10-20 years.
  • 25. Small Scale Vermicomposting • Common earthworms won’t work! • Need red wigglers or African red worms. • Can’t tolerate extreme temperatures. • Works quite well in small living spaces. • Takes several months to create worm compost. • A great additive to potting soil! • Worm tea is also a benefit to watering plants.
  • 27. Making compost is managing a microbe farm. • All it takes is food, air, and water. • The food needs to be balanced. • Principal concerns are carbon and nitrogen. • Water and oxygen are also necessary. • The microbes will do the rest!
  • 28. Diversity is best! • Nutrient diversity - balanced diet. • Biological diversity – inoculum to get started. • Particle size diversity- prevents compaction and allows for aeration. • Water content – not too wet or too dry.
  • 29. Carbon vs. Nitrogen • Carbon sources are leaves, straw, and wood shavings. • Nitrogen sources are manure and plant material. • Try to maintain a 3:1 ratio of Carbon to Nitrogen.
  • 30. Air • Develops faster when turned. • Compaction results in anaerobic zones that will create bad odors. • Varied particle size will help prevent compaction. • Large 4” PVC pipe drilled with holes and placed in center can help.
  • 31. Water • Microbes need water. • Good when you can squeeze a hand full and it stays together. • Too much can cause it to smell. • Too little can slow it down and likely not compost evenly. • Don’t count on rainfall to be adequate!
  • 32. Temperature • Compost must heat to develop properly. • Center of pile can reach above 130 F. • Too hot for a human hand. • Test temperature by placing hand in pile. If too hot, then aeration is necessary to bring temperature down. • If not heating, then may be too dry or not enough nitrogen present.
  • 33. pH • pH is a measure of acidity or alkalinity • The ideal pH is <7.5 • The pH will decline as the compost matures. • For home gardeners, testing is usually not necessary.
  • 34. Adding compost to soil • Spread on soil surface and turn into the top 6 inches. • Mix with potting soil or use to make your own potting soil. • Additional mulch added on top is necessary to help hold in moisture.
  • 35. Benefits of adding compost • Rebuilds soil structure. • Improves clay soil. • Slows rain run-off. • Increases water holding capacity. • Releases nutrients at a slow rate.
  • 36. Adding compost creates healthy soil.