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for Open Biodiversity Knowledge Management
Donat Agosti
Plazi
Supported by the European Commission through its FP7 research funding programme
Bouchout Declaration
Coordination and Policy Development in Preparation for a European Open
Biodiversity Knowledge Management System
Donat Agosti
Plazi
Supported by the European Commission through its FP7 research funding programme
(pro-)iBiosphere
Hardisty, Nature 502, 171 (2013)
BUT: predictive ecology has substantial data needs
Harfoot, BIH2013, Rome, 2013
The big question
What is the future of the biological world?
Imagine if we could:
…Predict community level dynamics of ecosystems at
scales from local to global, based on the ecology and
biology of all individual organisms
Decentralized biodiversity infrastructure
Plants
3,400 Herbaria worldwide
10,000 Associate curators and specialists
350,000,000 specimens in collections
180,000,000 specimens digitized
2,000,000,000 specimens including animals
Source: gbif.org; http://sciweb.nybg.org/science2/IndexHerbariorum.asp
One collection’s view of the world
Nationaal Herbarium Nederland collection on GBIF
Source: http://www.gbif.org/dataset/7b33b040-f762-11e1-a439-00145eb45e9a
200,000,000+ printed pages
1,900,000 species described
20,000,000+ species treatments
17,000 new species per year
Biodiversity libraries
BUT: The data are hidden
Incomplete digitization
Publications are not semantically
enhanced
Collections are incomplete
Data is not linked
Most data are not open
Names as information tags in life sciences
Names
Characteristics
Publications
GenesCollections
Specimens
Distribution
iBiosphere
Biodiversity Knowledge Management System
Create digital objects
+ Identifiers and resolvers
+ Open Access
+ Legislation
+ Adequate infrastructure
+ Sustainable and permanent infrastructure
+ Reliable services for partners in research projects and society
Seamless Global Virtual Research Knowledge Management System
(European Open Biodiversity Knowledge Management System)
Biodiversity Knowledge Management System
Bouchout Declaration
Bouchout Declaration
Bouchout Declaration
Support reliable and permanent open access to digital
biodiversity records
Create identifiers and link biodiversity literature, collections,
digital objects, genes, etc.
Ensure global interoperability and sharing of biodiversity data,
information and knowledge
Ongoing dialogue to refine the concept and implementation
As signatories, we encourage an overarching approach to Open Biodiversity
Knowledge Management which is based on the following fundamental
principles:
http://plazi.org/?q=bouchout
Status
Institutional: 20; Individual: 7
Large Natural History Institutions (e.g BGBM, Naturalis, MfN,
INBio,)
Scientific Networks (e.g. IUBS, Vertnet, CRIA, TaiBIF,
Canadensys)
Scientists
Global
Initial Signatories (May 23)
Impact
June 12, Bouchout Castle, Plantentuin Meise, Meise, Belgium
Official Launch
Sign now!
When do you sign?
bouchout@plazi.org

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20140523 swiss curators_bouchout_2

  • 1. for Open Biodiversity Knowledge Management Donat Agosti Plazi Supported by the European Commission through its FP7 research funding programme Bouchout Declaration
  • 2. Coordination and Policy Development in Preparation for a European Open Biodiversity Knowledge Management System Donat Agosti Plazi Supported by the European Commission through its FP7 research funding programme (pro-)iBiosphere
  • 3. Hardisty, Nature 502, 171 (2013) BUT: predictive ecology has substantial data needs Harfoot, BIH2013, Rome, 2013 The big question What is the future of the biological world? Imagine if we could: …Predict community level dynamics of ecosystems at scales from local to global, based on the ecology and biology of all individual organisms
  • 4. Decentralized biodiversity infrastructure Plants 3,400 Herbaria worldwide 10,000 Associate curators and specialists 350,000,000 specimens in collections 180,000,000 specimens digitized 2,000,000,000 specimens including animals Source: gbif.org; http://sciweb.nybg.org/science2/IndexHerbariorum.asp
  • 5. One collection’s view of the world Nationaal Herbarium Nederland collection on GBIF Source: http://www.gbif.org/dataset/7b33b040-f762-11e1-a439-00145eb45e9a
  • 6. 200,000,000+ printed pages 1,900,000 species described 20,000,000+ species treatments 17,000 new species per year Biodiversity libraries BUT: The data are hidden Incomplete digitization Publications are not semantically enhanced Collections are incomplete Data is not linked Most data are not open
  • 7. Names as information tags in life sciences Names Characteristics Publications GenesCollections Specimens Distribution
  • 9. Create digital objects + Identifiers and resolvers + Open Access + Legislation + Adequate infrastructure + Sustainable and permanent infrastructure + Reliable services for partners in research projects and society Seamless Global Virtual Research Knowledge Management System (European Open Biodiversity Knowledge Management System) Biodiversity Knowledge Management System
  • 11. Bouchout Declaration Support reliable and permanent open access to digital biodiversity records Create identifiers and link biodiversity literature, collections, digital objects, genes, etc. Ensure global interoperability and sharing of biodiversity data, information and knowledge Ongoing dialogue to refine the concept and implementation As signatories, we encourage an overarching approach to Open Biodiversity Knowledge Management which is based on the following fundamental principles: http://plazi.org/?q=bouchout
  • 12. Status Institutional: 20; Individual: 7 Large Natural History Institutions (e.g BGBM, Naturalis, MfN, INBio,) Scientific Networks (e.g. IUBS, Vertnet, CRIA, TaiBIF, Canadensys) Scientists Global Initial Signatories (May 23)
  • 13. Impact June 12, Bouchout Castle, Plantentuin Meise, Meise, Belgium Official Launch
  • 14. Sign now! When do you sign? bouchout@plazi.org

Editor's Notes

  1. Where does the data come from? Data comes from the institutions and legacy literature 116,000,000 plant records
  2. Collections, GBIF series None is complete on its own, the power is in aggretation; data highly complimentary, none complete alone, power in aggregation