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Contemporary rodent decline in
         Australia
Presentation by Mike Lawes, Diana Fisher, Chris
Johnson, Mike Letnic, Alex Kutt, Anke Frank
An output of the ACEAS working group:
Vast lands and variable data: systematic
analyses to understand the patterns and
      processes of mammal decline
Databases
Collate survey, museum, literature data on mammal presence/abundance
across Australia, especially northern Australia: >600,000 data records
Australia: a third (24 species) of all recent
     mammal extinctions worldwide




                  Causes? Invasive
               predators, changed fire
            regimes, cattle/sheep grazing
             pressure…plus other factors
… the northern tropics seemed OK…
But northern savannas have recently
      experienced dramatic declines of small
      mammals: eg. Kakadu NP (Woinarski et al
      2010)
                                          Individuals                                                 Species
                              16                                                         3.5
No. of individuals per plot




                              14                                                          3




                                                               No. of species per plot
                              12                                                         2.5
                              10
                                                                                          2
                              8
                                                                                         1.5
                              6
                                                                                          1
                              4
                              2                                                          0.5
                              0                                                           0
                                   1996          2001   2008                                   1996        2001   2008
                                                 Year                                                      Year
Problems in diagnosing cause:
• Lots of contenders:
  fire, grazing, cats, climate/weather
  change, disease, toads…
• Patchy survey, observational & historical
  data, spread unevenly over a vast area
• Almost no in-depth study of declining
  populations, and little time
• Declines happening fast
Aims:
• Collate, review and analyse all existing
  data & evidence
• Evaluate hypotheses/formulate new
  hypotheses
• Apply traditional & novel methods for
  analysis of disparate data sets
• Define new policy and management
  practices for Govts and communities
Global Ecology and Biogeography

The historical and current decline of
tropical marsupials in Australia

Diana O. Fisher, Chris N. Johnson, Michael J.
Lawes, Susanne A. Fritz, Hamish
McCallum, Simon P. Blomberg, Jeremy
VanDerWal, Brett Abbott, Anke Frank, Sarah
Legge, Mike Letnic, Colette R. Thomas, Alaric
Fisher, Iain J. Gordon, Alex Kutt.

   North & South                          South             North

   Body mass                      medium-sized species   small species

   Habitat structure

   Habitat modification
   (reduced cover)

   Introduced predators
Random forest -             Error rates:
                            Out-of-sample prediction: 21%
conditional inference       Non-declining species     16%
                            Declining species         27%
tree                N   S
Rodents
• Accounted for
  phylogenetic non-
  independence using
  GLS model and
  phylogeny derived
  from Cardillo et al.
  (2004), using Ford
  (2006) for resolution
  of Pseudomys and
  Geffen et al. (2011)
  for Rattus.
• Strong phylogenetic
  signal.
Regression models
          Declines: Size in S vs. N
• Strong linear
  correlation
  between decline
  and body mass in
  the south but not
  the north.
• Declining rodent
  species in the
  north are 40-270 g.
• This size range in
  the south is the
  larger species.
Declines: Size in S vs. N
Larger rodents
declined more in the
south, and no ‘large’
rodents survived in
the south.

Maximum size of                Maximum size
southern rodents is            southern spp.
approx. half that for
northern rodents
Declines: Aridity S vs. N
• Rodent declines in the south
  have been worse in arid
  areas.
• No clear trend with rainfall in
  the north
• All declined rodents in the
  north are from mid-rainfall
  savanna and not desert or
  forest
• But, many savanna-climate
  rodents are also OK
Summary: Regression models
• A particular size range (75 – 240 g) of rodents is
  at risk.
• These are the larger southern rodents and the
  medium sized northern ones.
• As in marsupials, all rainforest species are safe.
• The most declined rodents are in savanna and
  arid environments, but also many species in all
  rainfall bands are fine – climate is NOT the
  primary driver of declines.
Classification tree analysis – all rodent
                 species
Northern rodent species
Of the three most important variables
(mass, habitat openness, rainfall) the declines
among northern rodents partition by mass
only and even then this is a weak inference.
Rodents larger than 76g are likely (P=0.3) to
decline, while smaller rodents are unlikely to
decline.
Southern rodent species
Species in semi-arid and arid regions are
significantly more likely to decline than those
in mesic regions, and in particular herbivorous
rodents. Insectivores or generalists are slightly
less likely to decline than herbivores.
Conclusions
• Drivers of decline consistent with findings for
  marsupials
• Decline predicted by a distinct suite of traits: body
  mass and habitat structure (climate and grazing
  dependent)
• Like the earlier southern declines, but size-range
  shifted down in the south and the north – predation?
• Suggests cat predation in
   the north vs. foxes in the
   south?
• Indicates interacting
  causes: cats/foxes-fire
  -grazing
Causes? (1) predation (cats)
• Declined species are prey
  of cats
• Persistence on cat-free
  islands …
• … but declines follow
  arrival of cats on islands
• Anecdotal evidence for
  local increase of cats (?)

And…
Causes? (2) fire




 Data from Woinarski et al (2010)


 and ….
Causes? (3) grazing
Recovery of mammals at Mornington
Sanctuary AWC, Kimberley
(data from Sarah Legge)
       Small mammal abundance




                                Years since removal of cattle
Single overall process causing rodent
  declines throughout the continent

• Declines caused primarily by predation
  (cats/foxes)

• Habitat changes by fire and grazing
  simplifies vegetation structure
  amplifying the effects of predation
Bigger messages
1. TERN/ACEAS process worked well to develop
   understanding of a rapidly unfolding ecological
   change
2. We might be looking at a classic ‘tipping point’ story
3. CWR for rodents
4. Control feral predators
5. Comparative analysis
   useful for identifying
   potential causes of
   multi-species decline
Further work enabled by the ACEAS
           working group
• ARC Linkage project on mechanisms of
  mammal decline
• NERP field projects on landscape
  management for northern small mammals
• AWC adaptive landscape management
• New sub-projects by WG members (fire
  scale, trends in dingoes)
• Data inputs for Red List reassessments of
  mammals [Australia  Global]

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Michael Lawes_Contemporary rodent decline and extinction in Australia: feral animals, frogs, felines or fire?

  • 1. Contemporary rodent decline in Australia Presentation by Mike Lawes, Diana Fisher, Chris Johnson, Mike Letnic, Alex Kutt, Anke Frank
  • 2. An output of the ACEAS working group: Vast lands and variable data: systematic analyses to understand the patterns and processes of mammal decline
  • 3. Databases Collate survey, museum, literature data on mammal presence/abundance across Australia, especially northern Australia: >600,000 data records
  • 4. Australia: a third (24 species) of all recent mammal extinctions worldwide Causes? Invasive predators, changed fire regimes, cattle/sheep grazing pressure…plus other factors
  • 5. … the northern tropics seemed OK…
  • 6. But northern savannas have recently experienced dramatic declines of small mammals: eg. Kakadu NP (Woinarski et al 2010) Individuals Species 16 3.5 No. of individuals per plot 14 3 No. of species per plot 12 2.5 10 2 8 1.5 6 1 4 2 0.5 0 0 1996 2001 2008 1996 2001 2008 Year Year
  • 7. Problems in diagnosing cause: • Lots of contenders: fire, grazing, cats, climate/weather change, disease, toads… • Patchy survey, observational & historical data, spread unevenly over a vast area • Almost no in-depth study of declining populations, and little time • Declines happening fast
  • 8. Aims: • Collate, review and analyse all existing data & evidence • Evaluate hypotheses/formulate new hypotheses • Apply traditional & novel methods for analysis of disparate data sets • Define new policy and management practices for Govts and communities
  • 9. Global Ecology and Biogeography The historical and current decline of tropical marsupials in Australia Diana O. Fisher, Chris N. Johnson, Michael J. Lawes, Susanne A. Fritz, Hamish McCallum, Simon P. Blomberg, Jeremy VanDerWal, Brett Abbott, Anke Frank, Sarah Legge, Mike Letnic, Colette R. Thomas, Alaric Fisher, Iain J. Gordon, Alex Kutt. North & South South North Body mass medium-sized species small species Habitat structure Habitat modification (reduced cover) Introduced predators
  • 10. Random forest - Error rates: Out-of-sample prediction: 21% conditional inference Non-declining species 16% Declining species 27% tree N S
  • 11. Rodents • Accounted for phylogenetic non- independence using GLS model and phylogeny derived from Cardillo et al. (2004), using Ford (2006) for resolution of Pseudomys and Geffen et al. (2011) for Rattus. • Strong phylogenetic signal.
  • 12. Regression models Declines: Size in S vs. N • Strong linear correlation between decline and body mass in the south but not the north. • Declining rodent species in the north are 40-270 g. • This size range in the south is the larger species.
  • 13. Declines: Size in S vs. N Larger rodents declined more in the south, and no ‘large’ rodents survived in the south. Maximum size of Maximum size southern rodents is southern spp. approx. half that for northern rodents
  • 14. Declines: Aridity S vs. N • Rodent declines in the south have been worse in arid areas. • No clear trend with rainfall in the north • All declined rodents in the north are from mid-rainfall savanna and not desert or forest • But, many savanna-climate rodents are also OK
  • 15. Summary: Regression models • A particular size range (75 – 240 g) of rodents is at risk. • These are the larger southern rodents and the medium sized northern ones. • As in marsupials, all rainforest species are safe. • The most declined rodents are in savanna and arid environments, but also many species in all rainfall bands are fine – climate is NOT the primary driver of declines.
  • 16. Classification tree analysis – all rodent species
  • 17. Northern rodent species Of the three most important variables (mass, habitat openness, rainfall) the declines among northern rodents partition by mass only and even then this is a weak inference. Rodents larger than 76g are likely (P=0.3) to decline, while smaller rodents are unlikely to decline.
  • 18. Southern rodent species Species in semi-arid and arid regions are significantly more likely to decline than those in mesic regions, and in particular herbivorous rodents. Insectivores or generalists are slightly less likely to decline than herbivores.
  • 19. Conclusions • Drivers of decline consistent with findings for marsupials • Decline predicted by a distinct suite of traits: body mass and habitat structure (climate and grazing dependent) • Like the earlier southern declines, but size-range shifted down in the south and the north – predation? • Suggests cat predation in the north vs. foxes in the south? • Indicates interacting causes: cats/foxes-fire -grazing
  • 20. Causes? (1) predation (cats) • Declined species are prey of cats • Persistence on cat-free islands … • … but declines follow arrival of cats on islands • Anecdotal evidence for local increase of cats (?) And…
  • 21. Causes? (2) fire Data from Woinarski et al (2010) and ….
  • 22. Causes? (3) grazing Recovery of mammals at Mornington Sanctuary AWC, Kimberley (data from Sarah Legge) Small mammal abundance Years since removal of cattle
  • 23. Single overall process causing rodent declines throughout the continent • Declines caused primarily by predation (cats/foxes) • Habitat changes by fire and grazing simplifies vegetation structure amplifying the effects of predation
  • 24. Bigger messages 1. TERN/ACEAS process worked well to develop understanding of a rapidly unfolding ecological change 2. We might be looking at a classic ‘tipping point’ story 3. CWR for rodents 4. Control feral predators 5. Comparative analysis useful for identifying potential causes of multi-species decline
  • 25. Further work enabled by the ACEAS working group • ARC Linkage project on mechanisms of mammal decline • NERP field projects on landscape management for northern small mammals • AWC adaptive landscape management • New sub-projects by WG members (fire scale, trends in dingoes) • Data inputs for Red List reassessments of mammals [Australia  Global]

Editor's Notes

  1. Add icons from ACEAS presentation 2010
  2. The most important variables in random forest models were body mass, habitat type, rainfall, diet, litter size and whether the species was from northern or southern Australia (Fig. 2). A conditional inference tree with these six traits indicates that the effects of habitat, body mass, diet and rainfall on decline probability differ between northern and southern marsupials, and that the crucial (first) dichotomous split was whether a species was northern versus southern (Fig. 2). The regression tree based on the Australia-wide data set indicates that body mass is the critical trait associated with declines in southern Australia, and reveals a threshold at 40.7 g, below which species were unlikely to decline. Species heavier than 6310 g had a lower risk than intermediate body sizes (40.7 – 6310 g).In contrast, the regression tree model suggests that medium body mass is not a critical factor in distinguishing species most at risk in the tropics, but among grassland and savanna dwelling marsupials, herbivorous species (which are relatively large: 6763  1186 g) were significantly less likely to decline than were carnivorous or omnivorous species (which are small: 625  156 g). The regression tree indicates that in southern Australia, rainfall is the next most important predictor of decline after body mass. All marsupials in the intermediate body mass range (40.7 – 6310 g) in the south declined if they were in a climate zone with less than 789 mm of rainfall a year. Most species in this size range also declined in higher rainfall regions in the south.In contrast, habitat structure is the critical trait that distinguishes declining marsupials in the tropics. Grassland and woodland (tropical savanna) species are at greatest risk, and almost no marsupials in forest or rainforest are declining. Among non-herbivores in the relatively open habitats of grassland and savanna, most marsupials in regions with more than 911 mm of annual rainfall are declining.