TERN Australia Soil & Herbarium Collection Brochure

TERN Australia
TERN AustraliaTERN Australia
TERN Australia Soil and
Herbarium Collection
Identifying new species diversity in
golden everlasting paper daisies
Golden everlasting paper daisies
occur across Australia in virtually
all habitats, except harsh desert.
Once considered one species,
TERN plant voucher samples and
tissue samples were instrumental to
research by the NSW Government,
which has identified that there are
in fact 11 similar looking species.
Realising the existence of species
and where they occur is essential
to their effective management;
otherwise there is the potential for
entire species, with important local
adaptations, to decline or become
extinct undetected. Specimen
collections such as TERN’s help
discover this cryptic species diversity.
The collection also enables scientists
to go back to samples of species
which have been revised to re-identify
them. This ensures species lists
from TERN sites can always be
kept accurate, something which
is impossible for surveys which
simply record species in the
field without taking a sample.
Supporting the discovery of new
medicines
Biological compounds found in soil,
called secondary metabolites, have
previously led to the discovery of
important medicines and agricultural
chemicals. The TERN soil sample
collection is the only one in the world
where every sample is linked to detailed
environmental data, and the only one
covering an entire continent. This
combination allowed scientists from
Rockefeller University in New York to
use TERN biological soil samples to
determine strategies to maximise the
discovery of secondary metabolites
based on latitude and environmental
conditions. This new knowledge is
expected to be instrumental to the
discovery of future medicines.
Re-evaluating carbon in dryland
ecosystems
A global analysis of the distribution of
forests and woodlands across dryland
ecosystems using TERN data has
increased current estimates of global
forest cover by nearly 10%. The work
is a direct result of TERN’s on-going
collaborations with the United Nation’s
Food and Agriculture Organization
through their Global Forest Survey,
which uses TERN data for crucial
on-ground verification of satellite-based
analyses. The results have drastically
improved the accuracy of global models
of terrestrial carbon sinks and carbon
inventories submitted under international
climate conventions including the
UNFCCC and the Kyoto Protocol.
Identification of species in new areas
In Tasmania, TERN plant samples
identified a weedy grass (Koeleria
mactantha) which was last seen in the
state around 200 years ago. The record
has alerted regional managers to the
re-emergence of the weed which is
naturalised in New South Wales
and the ACT.
In Northern Australia, the red-flowering
kurrajong, a small native tree, was not
previously known to occur in Kakadu
National Park, with previous sightings in
the park misidentified. TERN vegetation
samples collected in Kakadu in 2021
have now been identified and verified
as red-flowering Kurrajong, thus
extending the known range of the
species into a new area.
It is always important to know which
species exist where, but this is especially
true for national parks. Knowing what
species are and are not present helps
with the development of management
strategies to protect them.
About TERN
The Terrestrial Ecosystem Research
Network (TERN) is Australia’s land
ecosystem observatory and is enabled
by the Australian Government’s
National Collaborative Research
Infrastructure Strategy (NCRIS).
TERN acknowledges the traditional
custodians of the lands upon which
we study and work and pay respect
to their elders past and present.
For collection enquiries contact
tern@adelaide.edu.au
tern.org.au
The TERN Australia Soil and
Herbarium Collection has over
150,000 vegetation and soil samples
collected from over 900 sites across
the continent and which represent
every major ecosystem.
Due to the growth of the national
collection, it has moved to new
purpose-built facilities at The
University of Adelaide Waite Campus,
which were jointly funded by the
Australian Government through the
National Collaborative Research
Infrastructure Strategy (NCRIS),
The University of Adelaide and the
South Australian Government.
The collection is nationally and
internationally unique as all samples
can be linked to other soil and
plant samples and detailed
environmental context data from
sample locations. This provides a
comprehensive understanding of
the condition of hundreds of
Australian ecosystems, how they
are changing, and how different
parts of the environment interact.
Thousands of samples are
borrowed by scientists from
Australia and overseas each year to
support research in environmental
science, agriculture and even
pharmaceutical development.
At a glance
Impacts
What is the collection
The TERN Australia Soil and Herbarium
Collection contains over 150,000
vegetation and soil samples collected
over the past 12 years from over 900
sites across the continent and which
represent every major ecosystem.
The collection is rapidly growing,
but currently contains:
• 55,000 Plant voucher specimens
of vascular plant species present
(i.e. everything more complex than
algae, or mosses and similar). Such
specimens are used for species
identification. The collection
contains 5,804 plant species
which represents one quarter
of Australia’s plant species.
• 70,000 Plant tissue samples,
particularly from dominant
species at survey sites, matched
to a voucher specimen. Tissue
samples can be used for genetic,
molecular, and isotopic analyses.
• 22,000 500g Soil samples for
physical and chemical analyses.
Supported by information on
soil classification, bulk density,
pH and salinity.
• 10,000 Samples of top-layer soil,
for DNA analysis to determine
species present. These are
called metagenomic samples.
National significance
One of the most unique and nationally
valuable things about this collection
is that rather than just providing
individual standalone sample records
like traditional reference herbariums,
for each sample in the TERN collection
scientists can access comprehensive
environmental information about
the 100m x 100m plot sites where
they were collected, and also find
every other sample collected at
the site. Sites are also resampled
roughly every three to ten years,
depending on the speed of
ecological change at the site.
This combination of detailed contextual
data and repeat sampling allows real
understand the conditions of the
environment where samples were
collected and how they are changing.
It also enables scientists to undertake
complex multi-disciplinary studies
about how different parts of the
environment relate to each other.
In this way, they can find connections
between short and long-term weather
patterns, soils, soil microbes, the
variety and numbers of different
plants, leaf litter, soil carbon, moisture,
vegetation structure and biomass
and other aspects of biodiversity.
Demand for the samples
Every year scientists from around
Australia and the globe borrow
thousands of samples from the
collection to further their research.
They work in a huge variety of fields
including environmental fields,
agriculture, microbiology and even
the development of pharmaceuticals.
For example, soils are one of the
main places that scientists look to
discover new biological products that
can underpin the development of
new antibiotics and even agricultural
chemicals. See the case study box
on supporting the discovery of new
medicines and other examples of how
the TERN collection is having impact.
The TERN Herbarium Collection is
internationally recognised and part of
Index Herbariorum – a global network
of herbaria. TERN also provides samples
to state herbariums where they
have gaps in their collections.
Ground-truthing national
environmental data
Another important use of the collection
is the calibration and validation of
national data sets that are derived from
modelling or satellite data. This includes
nationally comprehensive datasets on
soils, landscapes, vegetation structure,
biomass, carbon, and plant communities.
These data sets are in turn used to
support environmental reporting and
decision making, such as State of the
Environment reporting and agricultural
assessments, and can also help to
meet emerging demands such as
natural capital accounting, and
industry sustainability reporting.
About the facility
The TERN Australia Soil and Herbarium
Collection facility is located at the Waite
Campus of The University of Adelaide.
The University of Adelaide is a key
TERN operating partner.
The new purpose-built facility was
opened in Dec 2022 by the National
Soils Advocate The Hon Penny Wensley
AC, after the collection outgrew
previous infrastructure. As new samples
are added to the collection each year,
the facility has been sized to meet the
needs of the collection until 2030. The
facility includes standard storage areas,
climate-controlled storage for perishable
samples and sample processing areas.
The on-going operation of the facility is
undertaken by The University of Adelaide,
with funding from NCRIS through TERN.
12 staff are involved in the on-going
collection, processing and management
of the samples. In addition, volunteers
contribute around 5000 hours per year
participating in collecting field work
(though numbers have reduced since
COVID); many are students for whom
the trips provide valuable scientific
field experience to compliment
environmental science degrees.
Enhanced service for
the scientific community
The upgraded facilities will also support
increased service and products for
the scientific community.
One of these will be the scanning of
vegetation voucher samples. The freely
available high-resolution images will
allow scientists to make better decisions
about which samples to loan and,
in some cases, use the digital
image for their research.
Vegetation sample records and scans
will increasingly flow through to
major national and international data
aggregators, such the Atlas of Living
Australia and the Global Biodiversity
Information Facility, to enhance the
visibility and accessibility of samples
by the scientific community, as well as
other interested community members.
TERN also collaborates with other
herbaria to ensure the specimens
collected have the highest scientific
and collection value.
Another new addition is a spectrometer
for scanning soil samples. This
instrument measures reflected
electromagnetic radiation at 2,500
separate wavelengths, giving an
indication of soil properties including
mineral composition. Many soil samples
have already been scanned and the
remainder will be will soon be scanned
and the data made freely available.
The types of samples collected and
made available is being expanded to
include additional faunal biodiversity
measures. While ants, which are
valuable ecological indicator species,
have been collected at some sites
historically, TERN is developing new
rapid and efficient ant sampling
methods, which could allow ants
to be routinely collected at all sites.
TERN works closely with numerous
NGO conservation groups, and
is open to strengthen these
collaborations, such as through
joint collecting trips and targeted
specimen exchanges.
1 of 2

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TERN Australia Soil & Herbarium Collection Brochure

  • 1. TERN Australia Soil and Herbarium Collection Identifying new species diversity in golden everlasting paper daisies Golden everlasting paper daisies occur across Australia in virtually all habitats, except harsh desert. Once considered one species, TERN plant voucher samples and tissue samples were instrumental to research by the NSW Government, which has identified that there are in fact 11 similar looking species. Realising the existence of species and where they occur is essential to their effective management; otherwise there is the potential for entire species, with important local adaptations, to decline or become extinct undetected. Specimen collections such as TERN’s help discover this cryptic species diversity. The collection also enables scientists to go back to samples of species which have been revised to re-identify them. This ensures species lists from TERN sites can always be kept accurate, something which is impossible for surveys which simply record species in the field without taking a sample. Supporting the discovery of new medicines Biological compounds found in soil, called secondary metabolites, have previously led to the discovery of important medicines and agricultural chemicals. The TERN soil sample collection is the only one in the world where every sample is linked to detailed environmental data, and the only one covering an entire continent. This combination allowed scientists from Rockefeller University in New York to use TERN biological soil samples to determine strategies to maximise the discovery of secondary metabolites based on latitude and environmental conditions. This new knowledge is expected to be instrumental to the discovery of future medicines. Re-evaluating carbon in dryland ecosystems A global analysis of the distribution of forests and woodlands across dryland ecosystems using TERN data has increased current estimates of global forest cover by nearly 10%. The work is a direct result of TERN’s on-going collaborations with the United Nation’s Food and Agriculture Organization through their Global Forest Survey, which uses TERN data for crucial on-ground verification of satellite-based analyses. The results have drastically improved the accuracy of global models of terrestrial carbon sinks and carbon inventories submitted under international climate conventions including the UNFCCC and the Kyoto Protocol. Identification of species in new areas In Tasmania, TERN plant samples identified a weedy grass (Koeleria mactantha) which was last seen in the state around 200 years ago. The record has alerted regional managers to the re-emergence of the weed which is naturalised in New South Wales and the ACT. In Northern Australia, the red-flowering kurrajong, a small native tree, was not previously known to occur in Kakadu National Park, with previous sightings in the park misidentified. TERN vegetation samples collected in Kakadu in 2021 have now been identified and verified as red-flowering Kurrajong, thus extending the known range of the species into a new area. It is always important to know which species exist where, but this is especially true for national parks. Knowing what species are and are not present helps with the development of management strategies to protect them. About TERN The Terrestrial Ecosystem Research Network (TERN) is Australia’s land ecosystem observatory and is enabled by the Australian Government’s National Collaborative Research Infrastructure Strategy (NCRIS). TERN acknowledges the traditional custodians of the lands upon which we study and work and pay respect to their elders past and present. For collection enquiries contact tern@adelaide.edu.au tern.org.au The TERN Australia Soil and Herbarium Collection has over 150,000 vegetation and soil samples collected from over 900 sites across the continent and which represent every major ecosystem. Due to the growth of the national collection, it has moved to new purpose-built facilities at The University of Adelaide Waite Campus, which were jointly funded by the Australian Government through the National Collaborative Research Infrastructure Strategy (NCRIS), The University of Adelaide and the South Australian Government. The collection is nationally and internationally unique as all samples can be linked to other soil and plant samples and detailed environmental context data from sample locations. This provides a comprehensive understanding of the condition of hundreds of Australian ecosystems, how they are changing, and how different parts of the environment interact. Thousands of samples are borrowed by scientists from Australia and overseas each year to support research in environmental science, agriculture and even pharmaceutical development. At a glance Impacts
  • 2. What is the collection The TERN Australia Soil and Herbarium Collection contains over 150,000 vegetation and soil samples collected over the past 12 years from over 900 sites across the continent and which represent every major ecosystem. The collection is rapidly growing, but currently contains: • 55,000 Plant voucher specimens of vascular plant species present (i.e. everything more complex than algae, or mosses and similar). Such specimens are used for species identification. The collection contains 5,804 plant species which represents one quarter of Australia’s plant species. • 70,000 Plant tissue samples, particularly from dominant species at survey sites, matched to a voucher specimen. Tissue samples can be used for genetic, molecular, and isotopic analyses. • 22,000 500g Soil samples for physical and chemical analyses. Supported by information on soil classification, bulk density, pH and salinity. • 10,000 Samples of top-layer soil, for DNA analysis to determine species present. These are called metagenomic samples. National significance One of the most unique and nationally valuable things about this collection is that rather than just providing individual standalone sample records like traditional reference herbariums, for each sample in the TERN collection scientists can access comprehensive environmental information about the 100m x 100m plot sites where they were collected, and also find every other sample collected at the site. Sites are also resampled roughly every three to ten years, depending on the speed of ecological change at the site. This combination of detailed contextual data and repeat sampling allows real understand the conditions of the environment where samples were collected and how they are changing. It also enables scientists to undertake complex multi-disciplinary studies about how different parts of the environment relate to each other. In this way, they can find connections between short and long-term weather patterns, soils, soil microbes, the variety and numbers of different plants, leaf litter, soil carbon, moisture, vegetation structure and biomass and other aspects of biodiversity. Demand for the samples Every year scientists from around Australia and the globe borrow thousands of samples from the collection to further their research. They work in a huge variety of fields including environmental fields, agriculture, microbiology and even the development of pharmaceuticals. For example, soils are one of the main places that scientists look to discover new biological products that can underpin the development of new antibiotics and even agricultural chemicals. See the case study box on supporting the discovery of new medicines and other examples of how the TERN collection is having impact. The TERN Herbarium Collection is internationally recognised and part of Index Herbariorum – a global network of herbaria. TERN also provides samples to state herbariums where they have gaps in their collections. Ground-truthing national environmental data Another important use of the collection is the calibration and validation of national data sets that are derived from modelling or satellite data. This includes nationally comprehensive datasets on soils, landscapes, vegetation structure, biomass, carbon, and plant communities. These data sets are in turn used to support environmental reporting and decision making, such as State of the Environment reporting and agricultural assessments, and can also help to meet emerging demands such as natural capital accounting, and industry sustainability reporting. About the facility The TERN Australia Soil and Herbarium Collection facility is located at the Waite Campus of The University of Adelaide. The University of Adelaide is a key TERN operating partner. The new purpose-built facility was opened in Dec 2022 by the National Soils Advocate The Hon Penny Wensley AC, after the collection outgrew previous infrastructure. As new samples are added to the collection each year, the facility has been sized to meet the needs of the collection until 2030. The facility includes standard storage areas, climate-controlled storage for perishable samples and sample processing areas. The on-going operation of the facility is undertaken by The University of Adelaide, with funding from NCRIS through TERN. 12 staff are involved in the on-going collection, processing and management of the samples. In addition, volunteers contribute around 5000 hours per year participating in collecting field work (though numbers have reduced since COVID); many are students for whom the trips provide valuable scientific field experience to compliment environmental science degrees. Enhanced service for the scientific community The upgraded facilities will also support increased service and products for the scientific community. One of these will be the scanning of vegetation voucher samples. The freely available high-resolution images will allow scientists to make better decisions about which samples to loan and, in some cases, use the digital image for their research. Vegetation sample records and scans will increasingly flow through to major national and international data aggregators, such the Atlas of Living Australia and the Global Biodiversity Information Facility, to enhance the visibility and accessibility of samples by the scientific community, as well as other interested community members. TERN also collaborates with other herbaria to ensure the specimens collected have the highest scientific and collection value. Another new addition is a spectrometer for scanning soil samples. This instrument measures reflected electromagnetic radiation at 2,500 separate wavelengths, giving an indication of soil properties including mineral composition. Many soil samples have already been scanned and the remainder will be will soon be scanned and the data made freely available. The types of samples collected and made available is being expanded to include additional faunal biodiversity measures. While ants, which are valuable ecological indicator species, have been collected at some sites historically, TERN is developing new rapid and efficient ant sampling methods, which could allow ants to be routinely collected at all sites. TERN works closely with numerous NGO conservation groups, and is open to strengthen these collaborations, such as through joint collecting trips and targeted specimen exchanges.