This was a presentation I gave as part of a four-hour workshop about using iNaturalist. The rest of the time, I did live screen sharing of the iOS app and website, or we were outside making observations.
This is a presentation I gave after showing an excellent introductory video created by the Virginia Master Naturalists (http://www.virginiamasternaturalist.org/citizen-science.html#presentation). It is of course a familiar mash up of my earlier presentations (it has several different slides than my presentations earlier this month).
This is a presentation I gave in March 2016 at Earlham College in Richmond, Indiana. The talk was recorded so you can watch it here: https://youtu.be/pCoTaBrgMRI
This is a presentation I gave to DC government biologists about how they can use iNaturalist to encourage residents to share their observations of biodiversity. The audience was "project managers" rather than participants. Thank you to Cullen Hanks (Texas Parks and Wildlife) for the slides he shared. Please adapt it for your own use (CC BY).
I hoped that attendees would bring laptops, but almost no one did. Thankfully it was a small group so they worked in pairs. I demoed some of the website features and gave the overview with time to make sure they created accounts (that lasted about an hour) and then everyone went outside to observe with mobile phones (or digital cameras). And as usual, this is a mashup of other presentations.
This presentation was given at a happy hour and focused on mobile data entry. There are several iOS app screen shots, but I recommend you move quickly through those slides and mostly refer people to the tutorial when they first download the app.
LinEpig: An online resource on erigonine epigynaNina Sandlin
Poster presented at 2009 American Arachnological Society describing LinEpig. This online gallery of anatomical spider images - which at this point included 120 species - was intended to help museum identify the Linyphiidae in their collections. These are some of the most numerous, most diverse and tiniest spiders in North America.
This is a presentation I gave after showing an excellent introductory video created by the Virginia Master Naturalists (http://www.virginiamasternaturalist.org/citizen-science.html#presentation). It is of course a familiar mash up of my earlier presentations (it has several different slides than my presentations earlier this month).
This is a presentation I gave in March 2016 at Earlham College in Richmond, Indiana. The talk was recorded so you can watch it here: https://youtu.be/pCoTaBrgMRI
This is a presentation I gave to DC government biologists about how they can use iNaturalist to encourage residents to share their observations of biodiversity. The audience was "project managers" rather than participants. Thank you to Cullen Hanks (Texas Parks and Wildlife) for the slides he shared. Please adapt it for your own use (CC BY).
I hoped that attendees would bring laptops, but almost no one did. Thankfully it was a small group so they worked in pairs. I demoed some of the website features and gave the overview with time to make sure they created accounts (that lasted about an hour) and then everyone went outside to observe with mobile phones (or digital cameras). And as usual, this is a mashup of other presentations.
This presentation was given at a happy hour and focused on mobile data entry. There are several iOS app screen shots, but I recommend you move quickly through those slides and mostly refer people to the tutorial when they first download the app.
LinEpig: An online resource on erigonine epigynaNina Sandlin
Poster presented at 2009 American Arachnological Society describing LinEpig. This online gallery of anatomical spider images - which at this point included 120 species - was intended to help museum identify the Linyphiidae in their collections. These are some of the most numerous, most diverse and tiniest spiders in North America.
LinEpig: Developing a taxonomic reference using collections-management systemsNina Sandlin
Presentation to the 2015 meeting of the American Arachnological Society on migrating LinEpig, from a public photo-sharing site to a museum-orientated relational database. LinEpig provides a reference to the only North American spiders with no key to genus.
First public presentation, at 2008 American Arachnological Society, of LinEpig, an online gallery to help museums identify spiders in the Linyphiidae family. This huge family of minute spiders includes the only North American spiders with no key to genus. LinEpig utilizes social features of Google's "Picasa" image-sharing software to deliver taxonomic and geolocation data.
This is a high school classroom ppt to accompany our study of the scientific method. Note: All of my lesson-based ppts are structured to accompany Holt Biology 2004 text book.
Learning about the world’s ecosystems updated power point aingridcyriaque
This is a powerpoint slideshare that is informative about nature's natural ecosytems. You will be able to view and visit various pictures of ecosystems. Also, you can participate over the web by going to sites where you can actively participate in activities geared towards kids learning more about ecosystems.
TraitBank is the structured data service of the Encyclopedia
of Life. Launched in 2014, it currently hosts 9 million
data records for 1.7 million taxa, including trait records
(eg: cell size, life history traits) and other attributes including
administrative ones (eg: IUCN status, type specimen
repository). Marine datasets include verbal localities
from WoRMS, habitat categories from AlgaeBase, water
temperature ranges based on known occurrence records
from OBIS, and literature derived datasets including cell
masses of phytoplankton and tissue mineralization types
of algae and invertebrates. Hosted records include all
available metadata, including detailed attribution, url of
data source if online; organism information including sex
and life stage; date, locality and method information for
field studies, and any other fields provided by the source.
TraitBank is not a repository. Most hosted records are
deposited with a scholarly publication, or an institutional
or aggregator database. Presence in TraitBank makes
individual records findable by EOL search (http://eol.org/
data_search) or web search engine. Search results on EOL
are available by CSV download and records are available
to semantic web applications via a JSON-LD web service,
including all metadata. Fresh Data is a data search service
in development primarily for the Citizen Science community,
funded by NSF. Interested occurrence data providers
will register to be indexed. Their data will be deposited at
GBIF, using the IPT, if possible, and in TraitBank otherwise
(eg: presence/absence or abundance data, if GBIF
cannot accommodate them). Searchers can query the
index for recent records by time, location and taxonomic
group. Registered researchers will also be able to save and
publish their data queries, which will alert them if new
data appears matching their criteria, and alert the data
provider that their data was delivered to a subscriber.
Listen to this recording of by IFLA's ENSULIB standing committee, to learn how libraries are working at the forefront of citizen science; the connection between NASA climate change science, citizen science observations, and mosquito-borne disease; how the international GLOBE Mission Mosquito citizen science campaign is providing a common language and approach for meeting the global challenge to ensure good health for all from mosquito-borne diseases; and examples of resources and partnerships that public, academic, and research libraries can leverage.
iEvoBio Keynote: Frontiers of discovery with Encyclopedia of Life -- TRAITBANK Cyndy Parr
Talk presented at iEvoBio 2014 conference in Raleigh, North Carolina. Though there's a similar title and overlap with the talk I posted last week, there is new material here especially geared towards an informatics crowd savvy in the tools and technology.
Data Publication for UC Davis Publish or PerishCarly Strasser
Intro presentation for panel on going beyond publishing journal articles. UC Davis "Publish or Perish?" Event, 13 Feb 2014. Sorry about missing gradient on some of slides!
Darlene Cavalier's keynote presentation, More Can Be Done, at Quebec STEM con...Darlene Cavalier
Copy of presentation delivered at Quebec STEM symposium. (note: some videos will not appear in slideshare): https://sites.google.com/site/quebecstem2012/
LinEpig: Developing a taxonomic reference using collections-management systemsNina Sandlin
Presentation to the 2015 meeting of the American Arachnological Society on migrating LinEpig, from a public photo-sharing site to a museum-orientated relational database. LinEpig provides a reference to the only North American spiders with no key to genus.
First public presentation, at 2008 American Arachnological Society, of LinEpig, an online gallery to help museums identify spiders in the Linyphiidae family. This huge family of minute spiders includes the only North American spiders with no key to genus. LinEpig utilizes social features of Google's "Picasa" image-sharing software to deliver taxonomic and geolocation data.
This is a high school classroom ppt to accompany our study of the scientific method. Note: All of my lesson-based ppts are structured to accompany Holt Biology 2004 text book.
Learning about the world’s ecosystems updated power point aingridcyriaque
This is a powerpoint slideshare that is informative about nature's natural ecosytems. You will be able to view and visit various pictures of ecosystems. Also, you can participate over the web by going to sites where you can actively participate in activities geared towards kids learning more about ecosystems.
TraitBank is the structured data service of the Encyclopedia
of Life. Launched in 2014, it currently hosts 9 million
data records for 1.7 million taxa, including trait records
(eg: cell size, life history traits) and other attributes including
administrative ones (eg: IUCN status, type specimen
repository). Marine datasets include verbal localities
from WoRMS, habitat categories from AlgaeBase, water
temperature ranges based on known occurrence records
from OBIS, and literature derived datasets including cell
masses of phytoplankton and tissue mineralization types
of algae and invertebrates. Hosted records include all
available metadata, including detailed attribution, url of
data source if online; organism information including sex
and life stage; date, locality and method information for
field studies, and any other fields provided by the source.
TraitBank is not a repository. Most hosted records are
deposited with a scholarly publication, or an institutional
or aggregator database. Presence in TraitBank makes
individual records findable by EOL search (http://eol.org/
data_search) or web search engine. Search results on EOL
are available by CSV download and records are available
to semantic web applications via a JSON-LD web service,
including all metadata. Fresh Data is a data search service
in development primarily for the Citizen Science community,
funded by NSF. Interested occurrence data providers
will register to be indexed. Their data will be deposited at
GBIF, using the IPT, if possible, and in TraitBank otherwise
(eg: presence/absence or abundance data, if GBIF
cannot accommodate them). Searchers can query the
index for recent records by time, location and taxonomic
group. Registered researchers will also be able to save and
publish their data queries, which will alert them if new
data appears matching their criteria, and alert the data
provider that their data was delivered to a subscriber.
Listen to this recording of by IFLA's ENSULIB standing committee, to learn how libraries are working at the forefront of citizen science; the connection between NASA climate change science, citizen science observations, and mosquito-borne disease; how the international GLOBE Mission Mosquito citizen science campaign is providing a common language and approach for meeting the global challenge to ensure good health for all from mosquito-borne diseases; and examples of resources and partnerships that public, academic, and research libraries can leverage.
iEvoBio Keynote: Frontiers of discovery with Encyclopedia of Life -- TRAITBANK Cyndy Parr
Talk presented at iEvoBio 2014 conference in Raleigh, North Carolina. Though there's a similar title and overlap with the talk I posted last week, there is new material here especially geared towards an informatics crowd savvy in the tools and technology.
Data Publication for UC Davis Publish or PerishCarly Strasser
Intro presentation for panel on going beyond publishing journal articles. UC Davis "Publish or Perish?" Event, 13 Feb 2014. Sorry about missing gradient on some of slides!
Darlene Cavalier's keynote presentation, More Can Be Done, at Quebec STEM con...Darlene Cavalier
Copy of presentation delivered at Quebec STEM symposium. (note: some videos will not appear in slideshare): https://sites.google.com/site/quebecstem2012/
Frontiers of discovery with Encyclopedia of LifeCyndy Parr
Presented at the National Museum of Natural History, Smithsonian Institution 18 June 2014
Describes, among other things, development of the TraitBank repository of species attributes, and the use of EOL and TraitBank in scientific research.
ANAMOLOUS SECONDARY GROWTH IN DICOT ROOTS.pptxRASHMI M G
Abnormal or anomalous secondary growth in plants. It defines secondary growth as an increase in plant girth due to vascular cambium or cork cambium. Anomalous secondary growth does not follow the normal pattern of a single vascular cambium producing xylem internally and phloem externally.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
DERIVATION OF MODIFIED BERNOULLI EQUATION WITH VISCOUS EFFECTS AND TERMINAL V...Wasswaderrick3
In this book, we use conservation of energy techniques on a fluid element to derive the Modified Bernoulli equation of flow with viscous or friction effects. We derive the general equation of flow/ velocity and then from this we derive the Pouiselle flow equation, the transition flow equation and the turbulent flow equation. In the situations where there are no viscous effects , the equation reduces to the Bernoulli equation. From experimental results, we are able to include other terms in the Bernoulli equation. We also look at cases where pressure gradients exist. We use the Modified Bernoulli equation to derive equations of flow rate for pipes of different cross sectional areas connected together. We also extend our techniques of energy conservation to a sphere falling in a viscous medium under the effect of gravity. We demonstrate Stokes equation of terminal velocity and turbulent flow equation. We look at a way of calculating the time taken for a body to fall in a viscous medium. We also look at the general equation of terminal velocity.
ESR spectroscopy in liquid food and beverages.pptxPRIYANKA PATEL
With increasing population, people need to rely on packaged food stuffs. Packaging of food materials requires the preservation of food. There are various methods for the treatment of food to preserve them and irradiation treatment of food is one of them. It is the most common and the most harmless method for the food preservation as it does not alter the necessary micronutrients of food materials. Although irradiated food doesn’t cause any harm to the human health but still the quality assessment of food is required to provide consumers with necessary information about the food. ESR spectroscopy is the most sophisticated way to investigate the quality of the food and the free radicals induced during the processing of the food. ESR spin trapping technique is useful for the detection of highly unstable radicals in the food. The antioxidant capability of liquid food and beverages in mainly performed by spin trapping technique.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
Using iNaturalist for record keeping, citizen science, and public engagement
1. Using for record keeping,
citizen science, & public engagement
Workshop for NAI Beltway Chapter
By Carrie E. Seltzer (@carrieseltzer)
National Geographic Society
April 25, 2016
3. Elements of an observation
C.E. Seltzer. CC BY
What? Who? When?
Where?
Details?
Community ID
Evidence
(photo or sound)
4. iNaturalist has an underlying taxonomy
• Observations should
somehow be attached
to the tree of life (i.e.
not rocks, water, trash,
etc.)
• Observations can be
attached at any
taxonomic level
C.E. Seltzer. CC BY
5. Start with the level of identification you know and others can
suggest IDs further up the tree of life
iNaturalist, CC BY
14. How you can be involved
Come to the Biodiversity Festival: Explore booths and
entertainment at Constitution Gardens.
Attend an inventory: Be a citizen scientist and work with
an expert.
Identify observations on iNaturalist: During and after the
event, help identify observations & welcome new users!
Be a Pro-Observer: Learn how to use iNaturalist and help
record data on inventories.
18. Export Data
• Use for analysis or
tracking student work
• Filter data and select
relevant fields to export
data as .csv or .kml (for
Google Earth)
C.E. Seltzer, National Geographic. CC BY
19. Open data for use and re-use
C.E. Seltzer, National Geographic. CC BY
29. What CAN’T you do with iNaturalist?
• Abiotic recording/monitoring (water quality,
precipitation, temperature, air quality, etc.)
• Recording/mapping entire plant communities
• Absence (iNat is best for presence-only)
• Difficult to record metadata around sampling
effort
• Not a GIS itself, but you can use the data in
another GIS.
C.E. Seltzer, National Geographic. CC BY
Editor's Notes
iNaturalist.org is a place for people to share their observations of biodiversity from anywhere in the world.
If you imagine the tree of life representing the relationships among species, iNaturalist you can start with whatever level of identification you know. Then someone else can come along and add a more specific ID and others can agree with it.
First of all, what is a BioBlitz?
National Geographic’s primary activity within our BioBlitz initiative has been partnering with the National Park Service to conduct a BioBlitz in a different national park each year during the decade leading up to the Park Service Centennial in 2016. This year there are BioBlitzes happening at more than 100 parks across the country and I’m going to explain how you can see data from ALL of them.
Cornerstone event: May 20 – 21 here in DC
When we first started in 2007 in Rock Creek Park, data were collected on paper data sheets and entered into spreadsheets. Then they moved to an iteratively improving relational database for the next several years, which improved data entry but the data weren’t readily accessible by most people. In 2014, NG and NPS started working with iNaturalist to open up the experience of data collection, use, and exploration. So what is iNaturalist?