Umbrella sampling is used to study nucleation in systems like the Ising model by adding a bias potential to restrict simulations to a range of the reaction coordinate φ. Multiple histograms of the biased distributions are combined to obtain the unbiased distribution and free energy. In the long-range Ising model, clusters can be mapped to a percolation model using a bond probability dependent on magnetization. The size of the largest cluster is used as the reaction coordinate. The choice of reaction coordinate affects results - underestimating cluster probabilities yields incorrect predictions while rigorous percolation mapping is consistent with theory. Vanishing of the free energy barrier does not necessarily imply a spinodal due to mean-field effects in long-range systems.
1) Robust wavelet denoising is proposed as an improvement over traditional waveshrink and basis pursuit methods, which are less effective when noise is non-Gaussian and contains outliers.
2) The proposed method formulates robust wavelet denoising as an optimization problem that minimizes a robust loss function, such as the Huber loss function, rather than least squares.
3) Two algorithms are proposed to solve the robust wavelet denoising optimization problem: block coordinate relaxation and an interior point method. Parameter selection is also discussed.
The document discusses generalized distributions and the central limit theorem. It begins by covering the normal distribution and how the central limit theorem explains why it is so common. It then discusses power law distributions and how they are more common in complex systems. The generalized central limit theorem states that the sum of random variables with power law distributions will tend towards a stable distribution. Stable distributions include the normal distribution as a special case and exhibit power law behavior for large values.
The document discusses a model of thermal sneutrino dark matter in the FD-term model of hybrid inflation. The FD-term model extends the MSSM with an inflaton-waterfall sector generating an effective μ-term and neutrino masses. During hybrid inflation, the inflaton field acquires a vacuum expectation value that breaks supersymmetry, giving masses to the right-handed sneutrino. Thermal production of right-handed sneutrinos in the early universe can account for the observed dark matter abundance if the sneutrinos annihilate via Yukawa interactions.
2nd semester 3rd class a optics lab exam 2013Qahtan Al-zaidi
1. The document is an optics laboratory note for a physics class at Baghdad University that provides 12 questions on topics in optics.
2. The questions cover concepts like Heisenberg's uncertainty principle, diffraction grating calculations, Michelson interferometer principles, Malus' law, Newton's rings experiment analysis, and definitions of optical phenomena like optical activity.
3. Students are instructed to answer 7 of the 12 questions in detail for the lab assignment.
This document summarizes an MPhys project report on optical coherence tomography using a Fourier domain method. The student, Riccardo William Monfardini, built an OCT apparatus and used it to measure the thickness of a microscope cover glass, determined to be 154.33±4.70μm. The report describes the theory behind OCT, including Fourier domain techniques, and details the student's method of using the apparatus to indirectly measure the glass thickness.
A simple, easy and flexible Defected Ground Structure (DGS) is proposed for rectangular arrays and
demonstrated theoretically in here with the aim of achieving suppression of cross polarization resulting improved
polarization purity in radiated fields. The employed DGS appears to be highly efficient in terms of suppressing
Cross Polarization especially in H-plane. A [2×2] array has been designed having aspect ratio of 1.3 and showing
14 dB enhancement in the segregation between the co-polarization to cross-polarization dissemination with
improved impedance Bandwidth.
Numerical ray tracing through a modified cladding fiber optic segment sensorsRadhi Chyad
1) The document investigates light transmission through an optical fiber with a modified cladding segment using 3D geometric optics modeling.
2) It analyzes how the intensity of transmitted light is affected by the refractive index and length of the modified cladding segment.
3) The modeling shows that if the modified cladding has a higher refractive index than the core, light transmission is very low due to partial reflection and losses. But if the modified cladding has a lower refractive index, transmission reaches saturation after a short segment length, making it suitable for sensor applications.
This document provides an overview of fundamental parameters of antennas including radiation pattern, beamwidth, radiation power density, radiation intensity, and directivity. Key points discussed include:
- Radiation patterns describe the directional properties of antenna radiation and include main lobes, minor lobes, and side lobes. Beamwidth refers to the angular width of the main lobe.
- Radiation power density and radiation intensity describe the power of electromagnetic waves radiated by an antenna in different units.
- Directivity is defined as the ratio of radiation intensity in a given direction compared to the average radiation intensity uniformly distributed over all directions.
1) Robust wavelet denoising is proposed as an improvement over traditional waveshrink and basis pursuit methods, which are less effective when noise is non-Gaussian and contains outliers.
2) The proposed method formulates robust wavelet denoising as an optimization problem that minimizes a robust loss function, such as the Huber loss function, rather than least squares.
3) Two algorithms are proposed to solve the robust wavelet denoising optimization problem: block coordinate relaxation and an interior point method. Parameter selection is also discussed.
The document discusses generalized distributions and the central limit theorem. It begins by covering the normal distribution and how the central limit theorem explains why it is so common. It then discusses power law distributions and how they are more common in complex systems. The generalized central limit theorem states that the sum of random variables with power law distributions will tend towards a stable distribution. Stable distributions include the normal distribution as a special case and exhibit power law behavior for large values.
The document discusses a model of thermal sneutrino dark matter in the FD-term model of hybrid inflation. The FD-term model extends the MSSM with an inflaton-waterfall sector generating an effective μ-term and neutrino masses. During hybrid inflation, the inflaton field acquires a vacuum expectation value that breaks supersymmetry, giving masses to the right-handed sneutrino. Thermal production of right-handed sneutrinos in the early universe can account for the observed dark matter abundance if the sneutrinos annihilate via Yukawa interactions.
2nd semester 3rd class a optics lab exam 2013Qahtan Al-zaidi
1. The document is an optics laboratory note for a physics class at Baghdad University that provides 12 questions on topics in optics.
2. The questions cover concepts like Heisenberg's uncertainty principle, diffraction grating calculations, Michelson interferometer principles, Malus' law, Newton's rings experiment analysis, and definitions of optical phenomena like optical activity.
3. Students are instructed to answer 7 of the 12 questions in detail for the lab assignment.
This document summarizes an MPhys project report on optical coherence tomography using a Fourier domain method. The student, Riccardo William Monfardini, built an OCT apparatus and used it to measure the thickness of a microscope cover glass, determined to be 154.33±4.70μm. The report describes the theory behind OCT, including Fourier domain techniques, and details the student's method of using the apparatus to indirectly measure the glass thickness.
A simple, easy and flexible Defected Ground Structure (DGS) is proposed for rectangular arrays and
demonstrated theoretically in here with the aim of achieving suppression of cross polarization resulting improved
polarization purity in radiated fields. The employed DGS appears to be highly efficient in terms of suppressing
Cross Polarization especially in H-plane. A [2×2] array has been designed having aspect ratio of 1.3 and showing
14 dB enhancement in the segregation between the co-polarization to cross-polarization dissemination with
improved impedance Bandwidth.
Numerical ray tracing through a modified cladding fiber optic segment sensorsRadhi Chyad
1) The document investigates light transmission through an optical fiber with a modified cladding segment using 3D geometric optics modeling.
2) It analyzes how the intensity of transmitted light is affected by the refractive index and length of the modified cladding segment.
3) The modeling shows that if the modified cladding has a higher refractive index than the core, light transmission is very low due to partial reflection and losses. But if the modified cladding has a lower refractive index, transmission reaches saturation after a short segment length, making it suitable for sensor applications.
This document provides an overview of fundamental parameters of antennas including radiation pattern, beamwidth, radiation power density, radiation intensity, and directivity. Key points discussed include:
- Radiation patterns describe the directional properties of antenna radiation and include main lobes, minor lobes, and side lobes. Beamwidth refers to the angular width of the main lobe.
- Radiation power density and radiation intensity describe the power of electromagnetic waves radiated by an antenna in different units.
- Directivity is defined as the ratio of radiation intensity in a given direction compared to the average radiation intensity uniformly distributed over all directions.
This document reviews research on the convergence of perturbation series in quantum field theory. It discusses Dyson's argument that perturbation series in quantum electrodynamics (QED) have zero radius of convergence due to vacuum instability when the coupling constant is negative. Large-order estimates show that perturbation series coefficients grow factorially fast in quantum mechanics and field theories. Finally, it describes the method of Borel summation, which may allow extracting the exact physical quantity from a divergent perturbation series through a unique mapping.
1998 characterisation of multilayers by x ray reflectionpmloscholte
This document presents a theoretical model for characterizing multilayers using X-ray reflection. The model includes refraction effects and describes diffuse scattering from multilayers with roughened interfaces, including islands and miscut-induced steps. The model calculates X-ray intensity profiles that can be compared to experimental data to deduce the morphology of interfaces, such as mean island size and average step height. The model is applied to experimental data from a Si/Ge multilayer and results in values consistent with AFM images.
Phase problem sorts out all the problem which occurs after the x-ray crystallization data. In this way, we have to find out maximum values of phases and amplitude both to give the better picture of electron density map and later it is verified and validated upto maximum refined 3-D structure.
Discovery of a_massive_selected_galaxy_clusterSérgio Sacani
This document reports the discovery of a massive galaxy cluster, IDCS J1426+3508, at a redshift of 1.75. Spectroscopic observations from Hubble and Keck confirm the cluster redshift. Archival Chandra X-ray data detect the cluster as an extended X-ray source, implying a mass of 5.6×1014 solar masses. This makes it an exceptionally massive cluster for its high redshift of 1.75. The discovery helps address issues in astrophysics by providing more high-redshift clusters to constrain cosmological parameters and study the evolution of massive galaxies in dense environments.
This document discusses challenges and open questions in nuclear density functional theory (DFT). It begins by providing background on DFT and how it has been applied to nuclei using approximations like the local density approximation. It then discusses questions around improving the nuclear energy density functional, including justifying terms from microscopic theory, improving treatment of pairing and beyond-mean-field correlations, and incorporating dynamics. The document concludes by emphasizing the need for focused theoretical efforts, international collaborations, and new experimental data to help address open questions in nuclear DFT.
Dielectrics in a time-dependent electric field: density-polarization functi...Claudio Attaccalite
In presence of a time-dependent macroscopic electric field the electron dynamics of dielectrics cannot be described by the time-dependent density only. We present a real-time formalism that has the density and the macroscopic polarization P as key quantities. We show that a simple local function of P already captures long-range correlation in linear and non-linear optical response functions.
Fractal analysis of resting state functional connectivity of the brainWonsang You
A variety of resting state neuroimaging data tend to exhibit fractal behavior where its power spectrum follows power-law scaling. Resting state functional connectivity is significantly influenced by fractal behavior which may not directly originate from neuronal population activities of the brain. To describe the fractal behavior, we adopted the fractionally integrated process (FIP) model instead of the fractional Gaussian noise (FGN) since the FIP model covers more general aspects of fractality than the FGN model. We also introduce a novel concept called the nonfractal connectivity which is defined as the correlation of short memory independent of fractal behavior, and compared it with the fractal connectivity which is an asymptotic wavelet correlation. We propose several wavelet-based estimators of fractal connectivity and nonfractal connectivity for a multivariate fractionally integrated noise (mFIN). The performance of these estimators was evaluated through simulation studies and the analyses of resting state functional MRI data of the rat brain.
The discovery of a giant arc associated with the galaxy cluster IDCS J1426.5+3508 at z=1.75 is reported. HST imaging reveals an arc-like object with a length-to-width ratio greater than 10, located near the brightest cluster galaxy. Attempts to measure the redshift of the arc through spectroscopy were unsuccessful. The existence of such a massive, strongly lensing cluster at this early epoch poses challenges for the standard ΛCDM model of structure formation.
The optical constants of highly absorbing films using the spectral reflectanc...Alexander Decker
This document summarizes a study that determined the optical constants of thin rhodium films using spectral reflectance measurements. The study used Kramers-Kronig relations to calculate the phase angle from reflectance measurements. This allowed determining the real refractive index. The extinction coefficient was then estimated using equations relating reflectance, refractive index, and film thickness. The determined optical constants compared well to values from an interference method. The method provides an accurate way to determine optical constants of highly absorbing thin films using normal incidence reflectance measurements alone.
Coherence and Stochastic Resonances in Fitz-Hugh-Nagumo ModelPratik Tarafdar
This document is a presentation summarizing a master's dissertation project on coherence and stochastic resonances in the FitzHugh-Nagumo model. It introduces coherence resonance and stochastic resonance as phenomena where noise can induce regularity or aid information transmission. It describes simulations showing these effects in the FitzHugh-Nagumo model and measures like coefficient of variation used to analyze the results. Future plans are to study how the model's response varies with parameter changes and noise on the oscillatory rather than fixed point side.
This document presents Kendi Muchungi's PhD thesis on rod-cone convergence in the retina. The thesis includes:
1) An introduction to the participating neurons in the retina and existing models of light adaptation and contrast gain control.
2) Research questions on how rod-cone convergence affects light adaptation and contrast gain control, and how this convergence could be exploited.
3) Details of the author's biologically inspired computational model of the retina that incorporates rod influence through rod-cone coupling and feedback from horizontal and amacrine cells.
4) Evaluation of the model showing it can replicate biological responses to variations in light intensity and contrast.
5) Analysis demonstrating the significance of rod influence in improving
This document summarizes research on quantum turbulence in superfluids like helium-4. Key points include:
- Turbulence involves a tangle of quantized vortex filaments. Dissipation occurs through reconnections and kelvin wave cascades.
- Numerical simulations show fluctuations in vortex line density follow a f^-5/3 scaling, matching experiments.
- Velocity statistics are non-Gaussian at small scales due to the quantum nature of vortices, but become Gaussian at larger scales.
- The decay of quantum turbulence can follow either a quasiclassical t^-3/2 or ultraquantum t^-1 scaling depending on conditions.
This document discusses techniques for analyzing electron diffraction patterns obtained via transmission electron microscopy (TEM). It begins by explaining what electron diffraction is and how it can be used to determine properties of crystalline samples like crystal structure, grain size, and orientation. Key points covered include indexing diffraction patterns, analyzing polycrystalline and single crystal patterns, and relating diffraction patterns to a sample's reciprocal lattice. The document provides detailed steps for measuring diffraction pattern features and indexing them to identify unknown materials.
This document is a master's thesis that analyzes stochastic oscillations and their power spectra. It begins with an introduction that discusses the ubiquity and challenges of modeling stochastic oscillations in biological systems. These oscillations are characterized by their autocorrelation functions and power spectra, which often display a narrow peak at a preferred frequency. The thesis will focus on analyzing the power spectra of two specific models of stochastic oscillations: an integrate-and-fire neuron driven by colored noise and a noisy heteroclinic oscillator. It will develop and apply analytical, semi-analytical, and numerical approaches to calculate the power spectra and characterize oscillations, comparing results to stochastic simulations.
Ptychography is a technique for scanning diffractive imaging that allows reconstruction of the phase and amplitude of an object from multiple diffraction patterns collected at different positions. It uses an iterative algorithm to recover the object by alternating between updating an estimated object and simulated diffraction patterns. This document discusses using ptychography at scanning transmission x-ray microscopes to achieve resolutions below 10 nm, as well as its applications in 3D imaging of biological samples with resolutions of 100nm or better and quantitative chemical analysis.
Phase locking in chains of multiple-coupled oscillatorsLiwei Ren任力偉
This document summarizes a research paper that studied phase locking in chains of oscillators with coupling beyond nearest neighbors. It introduced a model for such chains using piecewise linear coupling functions. The paper proved the existence of phase locked solutions for this model by using a homotopy method to smoothly transform the model into more realistic coupling functions. It discussed differences between models with multiple coupling versus nearest neighbor coupling only, and highlighted the importance of studying coupling beyond just the nearest neighbors seen in some biological systems.
1) Theoretical physics theories are more valid if they can predict new phenomena that can be tested, rather than just explaining existing phenomena.
2) The document presents three examples from network science that demonstrate both explanation and prediction: (i) predicting epidemic spreading, (ii) predicting abrupt breakdown of interconnected networks, and (iii) predicting El Niño events.
3) Research on coupled networks found that the robustness of interconnected networks decreases abruptly rather than continuously as networks become more complex, moving from a second-order transition to a first-order transition with cascading failures.
1. The document describes experiments and models of visual cortex neurons and their responses to visual stimuli.
2. A 2-dimensional continuum model of visual cortex is presented, with excitatory and inhibitory neuron populations in different layers and types of synapses between them.
3. The model is able to simulate responses of neurons to changes in orientation of visual stimuli and capture effects of adaptation and stimulus contrast. Comparisons are made to experimental data.
E. Sefusatti, Tests of the Initial Conditions of the Universe after PlanckSEENET-MTP
This document outlines Emiliano Sefusatti's presentation on testing the initial conditions of the universe using data from the Planck satellite. The presentation covers predictions from inflation like a flat, homogeneous universe with a nearly scale-invariant power spectrum. It discusses how Planck improved constraints on non-Gaussianity parameters like fNL compared to WMAP. For example, Planck reduced errors on the local fNL parameter by a factor of 2-4 depending on the shape. The implications of Planck's results are explored through the example of constraints on a DBI inflation model.
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E. Sefusatti, Tests of the Initial Conditions of the Universe after Planck
Umbrella Sampling in the Long-Range Ising Model
1. Umbrella Sampling in the Long-Range Ising Model
Ranjit Chacko Harvey Gould W. Klein
Clark University Clark University Boston University How does the choice of the reaction coordinate affect
Questions
the results?
• Umbrella sampling has been used to study
• For largest cluster to be a good reaction coordinate the
nucleation in the Ising model, Lennard-Jones and
clusters must be statistically independent and large
other particle systems. How does the order
clusters must be rare.
parameter affect the magnitude of the free energy
barrier ∆F ? • Rigorous percolation mapping for clusters gives
results consistent with theory (diamonds in Fig. 1).
• Does vanishing of ∆F imply the existence of a
Other choices give the wrong physics.
spinodal?
• Underestimating p predicts hs to be less than mean-
Fig. 1: ∆F vs. φ for 1D long-range Ising model field value (crosses in Fig. 1).
(L = 512, R = 64) at h = 1.2 and T = 4Tc /9.
What is umbrella sampling? • Overestimating p increases predicted value of hs .
Changing p changes the value of∆F .
Instead of simulating the system of interest, a bias Hence, there appears to be a metastable state beyond
potential V(φ), where φ is the reaction coordinate, the actual limit of stability. Various workers have
is added to the Hamiltonian of the original system. studied nucleation in the Ising model using p = 1
V(φ) restricts the simulation to a range of φ. The (circles in Fig. 1).
biased sampling generates a distribution ˜
P (φ) which How do we know when there is a spinodal?
is related to the distribution P (φ) of the unbiased • A spinodal is the limit of stability, and is defined by
system. the divergence of χ. χ will diverge at an inflection
We obtain a series of estimates of P (φ) by using point of the free energy.
different bias potentials Vk in different windows: Fig. 2: ∆F vs. φ for 1D long-range Ising model • Because a spinodal is a mean-field effect, a system
˜
Pk (φ) ∝ exp(βVk )Pk (φ). at three values of h. Theory: hs = 1.27 . Correct with short-range interactions cannot have a spinodal.
probability: hs ≈ 1.25. p = 0.89: hs > 1.25. Spinodal effects can appear if the interaction is
The multiple histogram method is used to calculate p = 0.02: hs 1.1. sufficiently long-range.
P (φ) from Pk (φ). The free energy F (φ) ∝ P (φ) .
• The vanishing of ∆F is not a sufficient condition for a
spinodal, because the inflection point can occur at the
maximum value of the order parameter. See Fig. 3.
What are the clusters in the long-range Ising
model? References
The long-range Ising model can be rigorously [1] G. Torrie and M. Valleau, J. Comp. Phys. 23, 187 (1977).
mapped onto a percolation model by placing bonds [2] A. Ferrenberg and R. Swendsen, Phys. Rev. Lett. 63, 1195 (1989).
[3] W. Klein, Phys. Rev. Lett. 65, 1462 (1990).
between parallel spins with bond probability [4] A. Pan and D. Chandler, J. Phys. Chem. B 108, 19681 (2004).
p = 1 − exp(−2βJ(1 + m)), [5] D. Frenkel, P. R. ten Wolde, and M. J. Ruiz-Montero, J. Chem.
where m is the magnetization. The clusters are Fig. 3: Free energy vs. m for 2D nearest Phys. 102 9932 (1996).
neighbor Ising model for different values of h [6] H. Wang, H. Gould, and W. Klein, Phys. Rev. E 76, 031604 (2007).
statistically independent. We use the size of the [7] P. Bhimalapuram, S. Chakrabarty, and B. Bagchi, cond-mat
largest cluster as a reaction coordinate. at T = 4Tc /9. ∆F → 0 at h = 0.91. χ does 0702158.
not diverge.