Lawrence Souder from Drexel University presented on June 14, 2011 at a panel on "International Year of Chemistry: Perils and Promises of Modern Communication in the Sciences" at the Special Libraries Association meeting. His talk covered Trust in Science and Science by Blogging, using as an example the NASA press release on arsenic in bacteria and subsequent controversy taking place in the blogosphere
Lawrence Souder from Drexel University presented on June 14, 2011 at a panel on "International Year of Chemistry: Perils and Promises of Modern Communication in the Sciences" at the Special Libraries Association meeting. His talk covered Trust in Science and Science by Blogging, using as an example the NASA press release on arsenic in bacteria and subsequent controversy taking place in the blogosphere
Article critiques ( Min 1500 words) Styles of leadership. .docxdavezstarr61655
Article critiques :( Min 1500 words)
Styles of leadership.
Note :-( Rules for submission) The structure includes:
• Title – informs us it is a review
• Informative Abstract – informs us this is a meta-analysis (novel analysis in a novel context of previously published data)
• Introduction
• Body – Material & Methods, Results (including the use of tables and figures to display novel findings), Discussion
• Conclusion – a listing of novel findings of the meta-analysis
• References – organized alphabetically
1. Abstract On your abstract page, center the word “Abstract” at the top of the page without any additional formatting.
On the next line, write a concise summary of your critique. This should be a brief summary about the article and your critique. Examples of points to make in this paragraph include objectively analyzing the article and evaluating its contributions to learning. This paragraph should be between 150 to 250 words.
2. Main Body Type your title at the top of the page without any additional formatting. Following a double space, begin writing your critique. Journal critiques analyze a variety of topics. Examples of issues you may want to include in this section include whether you found any errors of fact or interpretation, the author was objective.
Choose one of the following subjects:
1-Bureaucratic Leadership
2-Charismatic Leadership
3-Servant Leadership
4-Transactional Leadership
References
Bacco, Alessandra Di, and Grace Gill. "The Secreted Glycoprotein CREG Inhibits Cell Growth Dependent on the Mannose-6-phosphate|[sol]|insulin-like Growth Factor II Receptor." Nature News. Nature Publishing Group, 21 Aug. 2003.
Bauer, Matthias, Anne C. Hamm, Melanie Bonaus, Andrea Jacob, Jens Jaekel, Hubert Schorle, Michael J. Pankratz, and Joerg D. Katzenberger. "Starvation Response in Mouse Liver Shows Strong Correlation with Life-span-prolonging Processes." Physiological Genomics. American Physiological Society, 13 Apr. 2004.
Briers, Demarcus. "Liver: Cell Types Found in Liver Simplified." DBrierscom. N.p., 20 Sept. 2012.
Bulla, Gary A. "Selective Loss of the Hepatic Phenotype Due to the Absence of a Transcriptional Activation Pathway." Somatic Cell and Molecular Genetics, 7 Mar. 1997.
Bulla, Gary. "Extinction of Alpha1-antitrypsin Expression in Cell Hybrids Is Independent of HNF1alpha and HNF4 and Involves Both Promoter and Internal DNA Sequences." Nucleic Acids Research 27 April. 1999. 1190-197.
Bulla, Gary A., Caitlin M. Aylmer, Adele L. Dust, Jeffrey L. Kurkewich, Leon K. Mire, and Arnold B. Estanda. "Genome-wide Analysis of Hepatic Gene Silencing in Hepatoma Cell Variants." Genomics 100.3 (2012): 176-83.
Bustin, Stephens. “Absolute Quantification of mRNA Using Real-Time Reverse Transcription Polymerase Chain Reaction Assays.” Journal of Molecular Endocrinology 25 (2000): 169–193.
Castell James and Gomez-Lechon John. “Liver Cell Culture Techniques.” Methods in Molecular Biology 481 (2009): 36-46.
.
Article critiques ( Min 1500 words) Styles of leadership. .docxdavezstarr61655
Article critiques :( Min 1500 words)
Styles of leadership.
Note :-( Rules for submission) The structure includes:
• Title – informs us it is a review
• Informative Abstract – informs us this is a meta-analysis (novel analysis in a novel context of previously published data)
• Introduction
• Body – Material & Methods, Results (including the use of tables and figures to display novel findings), Discussion
• Conclusion – a listing of novel findings of the meta-analysis
• References – organized alphabetically
1. Abstract On your abstract page, center the word “Abstract” at the top of the page without any additional formatting.
On the next line, write a concise summary of your critique. This should be a brief summary about the article and your critique. Examples of points to make in this paragraph include objectively analyzing the article and evaluating its contributions to learning. This paragraph should be between 150 to 250 words.
2. Main Body Type your title at the top of the page without any additional formatting. Following a double space, begin writing your critique. Journal critiques analyze a variety of topics. Examples of issues you may want to include in this section include whether you found any errors of fact or interpretation, the author was objective.
Choose one of the following subjects:
1-Bureaucratic Leadership
2-Charismatic Leadership
3-Servant Leadership
4-Transactional Leadership
References
Bacco, Alessandra Di, and Grace Gill. "The Secreted Glycoprotein CREG Inhibits Cell Growth Dependent on the Mannose-6-phosphate|[sol]|insulin-like Growth Factor II Receptor." Nature News. Nature Publishing Group, 21 Aug. 2003.
Bauer, Matthias, Anne C. Hamm, Melanie Bonaus, Andrea Jacob, Jens Jaekel, Hubert Schorle, Michael J. Pankratz, and Joerg D. Katzenberger. "Starvation Response in Mouse Liver Shows Strong Correlation with Life-span-prolonging Processes." Physiological Genomics. American Physiological Society, 13 Apr. 2004.
Briers, Demarcus. "Liver: Cell Types Found in Liver Simplified." DBrierscom. N.p., 20 Sept. 2012.
Bulla, Gary A. "Selective Loss of the Hepatic Phenotype Due to the Absence of a Transcriptional Activation Pathway." Somatic Cell and Molecular Genetics, 7 Mar. 1997.
Bulla, Gary. "Extinction of Alpha1-antitrypsin Expression in Cell Hybrids Is Independent of HNF1alpha and HNF4 and Involves Both Promoter and Internal DNA Sequences." Nucleic Acids Research 27 April. 1999. 1190-197.
Bulla, Gary A., Caitlin M. Aylmer, Adele L. Dust, Jeffrey L. Kurkewich, Leon K. Mire, and Arnold B. Estanda. "Genome-wide Analysis of Hepatic Gene Silencing in Hepatoma Cell Variants." Genomics 100.3 (2012): 176-83.
Bustin, Stephens. “Absolute Quantification of mRNA Using Real-Time Reverse Transcription Polymerase Chain Reaction Assays.” Journal of Molecular Endocrinology 25 (2000): 169–193.
Castell James and Gomez-Lechon John. “Liver Cell Culture Techniques.” Methods in Molecular Biology 481 (2009): 36-46.
.
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
7. Ebrahim A., Almaas E., Bauer E., Bordbar A., Burgard A.P., Chang R.L., Dräger A., Famili I., Feist A.M., Fleming
R.M., Fong S.S., Hatzimanikatis V., Herrgård M.J., Holder A., Hucka M., Hyduke D., Jamshidi N., Lee S.Y., Le
Novère N., Lerman J.A., Lewis N.E., Ma D., Mahadevan R., Maranas C., Nagarajan H., Navid A., Nielsen J., Nielsen
L.K., Nogales J., Noronha A., Pal C., Palsson B.O., Papin J.A., Patil K.R., Price N.D., Reed J.L., Saunders M.,
Senger R.S., Sonnenschein N., Sun Y., Thiele I. Do genome-scale models need exact solvers or clearer standards?
Molecular Systems Biology (2015) 11(10):831
Swat M.J., Moodie S., Wimalaratne S.M., Kristensen N.R., Lavielle M., Mari A., Magni P., Bizzotto R., Pasotti L,
Mezzalana E, Smith M. K., Comets E., Sarr C., Terranova N., Blaudez E., Chan P., Chard J., Chatel K., Chenel M.,
Edwards D., Franklin C, Giorgino T., Glont M., Girard P., Grenon P., Harling K., Hooker A.C, Kaye R., Keizer R., Kloft
C., Kok, J. N., Kokash N., Laibe C., Laveille C., Lestini G., Mentré F., Mezzalana E., Munafo A., Nordgren R., Nyberg
H.B., Para-Guillen Z.P., Pasotti L., Plan E., Ribba B., Smith G., Trocóniz I.F., Yvon F., Harnisch L., Karlsson M.,
Hermjakob H., Le Novère N. Pharmacometrics Markup Language (PharmML): Opening New Perspectives for Model
Exchange in Drug Development. CPT: Pharmacometrics & Systems Pharmacology (2015) 6: 316-319
Deans A.R., Lewis S.E., Huala E., Anzaldo S.S., Ashburner M., Balhoff J.P., Blackburn D.C., Blake J.A., Burleigh
J.G., Chanet B., Cooper L.D., Courtot M., Csõsz S., Cui H., Dahdul W., Das S., Dececchi T.A., Dettai A., Diogo R.,
Druzinsky R.E., Dumontier M., Franz N.M., Friedrich F., Gkoutos G.V., Haendle M., Harmon L.J., Hayamizu T.F., He
Y., Hines H.M., Ibrahim N., Jackson L.M., Jaiswal P., James-Zorn C., Köhler S., Lapp H., Lawrence C.J., Le Novère
N., Lecointre G., Lundberg J.G., Macklin J., Mast A.R., Midford P.E., Mikó I., Mungall C.J., Oellrich A., Osumi-
Sutherland D., Parkinson H., Ramírez M.J., Richter S., Robinson P.N., Ruttenberg A., Schulz K.S., Segerdell E.,
Seltmann K.C., Sharkey M.J., Smith A.D., Smith B., Specht C.D., Squires R.B., Thacker R.W., Thessen A.,
Fernandez-Triana J., Vihinen M., Vize P.D., Voget L., Wall C.E., Walls R.L., Westerfield M., Wharton R.A., Wirkner
C.S., Wooley J.B., Yoder M.J., Zorn A.M., Mabee P.M. Finding our way through phenotypes. PLoS Biology (2015)
13(1): e1002033
Thiele I., Swainston N., Fleming R.M.T., Hoppe A., Sahoo S., Aurich M.K., Haraldsdottir H., Mo M.L., Rolfsson O.,
Stobbe M.D., Thorleifsson S.G., Agren R., Bölling C., Bordel S., Chavali A.K., Dobson P., Dunn W.B., Endler L.,
Goryanin I., Gudmundsson S., Hala D., Hucka M., Hull D., Jameson D., Jamshidi N., Jonsson J.J., Juty N., Keating
S., Nookaew I., Le Novère N., Malys N., Mazein A., Papin J.A, Price N.D., Selkov E., Sigurdsson M.I., Simeonidis E.,
Sonnenschein N., Smallbone K., Sorokin A., Van Beek H., Weichart D., Nielsen J.B., Westerhoff H.V, Kell D.B.,
Mendes P., Palsson B.Ø. A community-driven global reconstruction of human metabolism. Nature Biotechnology
(2013) 31: 419–425
8. Some of the problems
Position of “dry” authors on publications
● Bioinformatics & modelling are sometimes afterthoughts
● Bioinformatics & modelling sometimes vanish once the prediction
has been validated
● Bioinformatics & modelling are “just techniques”. They are not “the
important thing”: Genotypes → medic leads; animal models →
molecular biologist leads; structure → crystallographer leads
Evaluation
● Only “peer reviewed” “articles” are counted. E.g. technical
specifications reviewed by 200 developers and users do not count
● Only the first and last author positions count, even if n main
authors and m senior ones
● Evaluations are made with only a cursory look at the CV: panel
consider journal name only (metrics are even banned from places
like EMBO and ERC)
14. Some attempts to subvert
the article-centrism
Journal publication of
dataset descriptors
Journal publications for
technical specifications of standards
15. Some attempts to subvert
the article-centrism
Journal publication of
dataset descriptors
Journal publications for
technical specifications of standards
This is great, but just hacks! One should directly acknowledge
the datasets, technical specs and training material!
18. Example: AERES
PhD supervision
3 medium impact publications = 1 publication in Nat/Cell/Sci
1 publications as 1st
author in journal of “important audience”
22. “There is no fate but what we make
for ourselves” (Sarah Connor, 1991)
Policies are designed by groups of researchers
Scientific officers are former researchers
Grant evaluation panels are made up of researchers
Editorial boards are made up of researchers
Recruitment panels are made up of researchers
Activity evaluation structures are made up of researchers
Who makes the rules? Who apply them?
So who exactly are the mindless bureaucrats
forcing inadequate rules on us?
23. Simple recommendations
Extend recognised types of outputs in natural sciences:
PhD thesis, books, technical specifications,
websites, software tools, datasets etc.
Allow multiple equal junior and senior authors
Promote author switching procedures for equal authors in CVs
Smith*, Dupont*, Müller, Fernandez et al.
→ Dupont*, Smith*, Müller, Fernandez et al.
Use metrics. Imperfect, but better than using only journal names.
read papers > m-index
> h-index > citation index
> journal names > # publis