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Worked Example
Refer to Worksheet 2
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
• An investigator invented a new diagnostic
tool for diagnosing liver impairment.
• the test gave readings ranging from 5 –
25.
• The investigator applied his test to a
sample of 25 volunteers. Of whom 10 were
known to have liver impairment and 15 are
known to be free.
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
5
10
15
20
25
Values obtained by the sample
Diseased
Free
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
• Since there was an overlap of values
obtained from Diseased and Disease free
individuals, the investigator was very
confused.
• What value should be considered as
Positive?
• What should be the cutoff point that
separates Diseased from Non Diseased?
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
• So , He decided to try different
cutoff points, and for each cutoff
calculate the predictive power of the
test.
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Step one:
• He decided that a value of 10 or
more will be considered as positive.
• And tried to construct a 2X2 table.
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Positive = 20
Negative = 5
5
10
15
20
25
Values obtained by the sample
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
All
Positives
All
Negatives
True
Positives
False
Negatives
True
Negatives
All
Disease
free
All Diseased
Test
Negative
Test
Positive
Diseased
Not
Diseased
False
Positives
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Test
Negative
Test
Positive
Diseased
Not
Diseased
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Sensitivity and specificity
• Sensitivity = True positives / all diseased
• 9/10 = 0.9 (90%)
• Specificity= True Negatives / all disease free
• 4/15 = 0.266 (26.6%)
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Step Two:
• He decided that a value of 15 or
more will be considered as positive.
• And tried to construct a 2X2 table.
• Calculated sensitivity and specificity
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Positive = 15
Negative = 10
5
10
15
20
25
Values obtained by the sample
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Test
Negative
Test
Positive
Diseased
Not
Diseased
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Sensitivity and specificity
• Sensitivity = True positives / all diseased
• 8/10 = 0.8 (80%)
• Specificity= True Negatives / all disease free
• 8/15 = 0.533 (53.3%)
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Step three:
• He decided that a value of 20 or
more will be considered as positive.
• And tried to construct a 2X2 table.
• Calculated sensitivity and specificity
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Positive = 10
Negative = 15
5
10
15
20
25
Values obtained by the sample
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Test
Negative
Test
Positive
Diseased
Not
Diseased
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Sensitivity and specificity
• Sensitivity = True positives / all diseased
• 6/10 = 0.6 (60%)
• Specificity= True Negatives / all disease free
• 11/15 = 0.733 (73.3%)
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
Conclusions
Dr. Alaa Hassan - MB BCh, MSc (PH), MD
• No single PERFECT cutoff point
• Sensitivity # Specificity

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Roc worksheet

  • 2. Dr. Alaa Hassan - MB BCh, MSc (PH), MD • An investigator invented a new diagnostic tool for diagnosing liver impairment. • the test gave readings ranging from 5 – 25. • The investigator applied his test to a sample of 25 volunteers. Of whom 10 were known to have liver impairment and 15 are known to be free.
  • 3. Dr. Alaa Hassan - MB BCh, MSc (PH), MD 5 10 15 20 25 Values obtained by the sample Diseased Free
  • 4. Dr. Alaa Hassan - MB BCh, MSc (PH), MD • Since there was an overlap of values obtained from Diseased and Disease free individuals, the investigator was very confused. • What value should be considered as Positive? • What should be the cutoff point that separates Diseased from Non Diseased?
  • 5. Dr. Alaa Hassan - MB BCh, MSc (PH), MD • So , He decided to try different cutoff points, and for each cutoff calculate the predictive power of the test.
  • 6. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Step one: • He decided that a value of 10 or more will be considered as positive. • And tried to construct a 2X2 table.
  • 7. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Positive = 20 Negative = 5 5 10 15 20 25 Values obtained by the sample
  • 8. Dr. Alaa Hassan - MB BCh, MSc (PH), MD All Positives All Negatives True Positives False Negatives True Negatives All Disease free All Diseased Test Negative Test Positive Diseased Not Diseased False Positives
  • 9. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Test Negative Test Positive Diseased Not Diseased
  • 10. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Sensitivity and specificity • Sensitivity = True positives / all diseased • 9/10 = 0.9 (90%) • Specificity= True Negatives / all disease free • 4/15 = 0.266 (26.6%)
  • 11. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Step Two: • He decided that a value of 15 or more will be considered as positive. • And tried to construct a 2X2 table. • Calculated sensitivity and specificity
  • 12. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Positive = 15 Negative = 10 5 10 15 20 25 Values obtained by the sample
  • 13. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Test Negative Test Positive Diseased Not Diseased
  • 14. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Sensitivity and specificity • Sensitivity = True positives / all diseased • 8/10 = 0.8 (80%) • Specificity= True Negatives / all disease free • 8/15 = 0.533 (53.3%)
  • 15. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Step three: • He decided that a value of 20 or more will be considered as positive. • And tried to construct a 2X2 table. • Calculated sensitivity and specificity
  • 16. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Positive = 10 Negative = 15 5 10 15 20 25 Values obtained by the sample
  • 17. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Test Negative Test Positive Diseased Not Diseased
  • 18. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Sensitivity and specificity • Sensitivity = True positives / all diseased • 6/10 = 0.6 (60%) • Specificity= True Negatives / all disease free • 11/15 = 0.733 (73.3%)
  • 19. Dr. Alaa Hassan - MB BCh, MSc (PH), MD Conclusions
  • 20. Dr. Alaa Hassan - MB BCh, MSc (PH), MD • No single PERFECT cutoff point • Sensitivity # Specificity