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A Guide to Branched Structure Analyses in Neurolucida

Categories of Branched
Structure Analyses in
Neurolucida

Neuron Summary
Segment
Segment Points
Each Tree
Tree Totals
Individual Tree
Terminal Distance
Layer Length
Nearest Termination
Terminals
Tree Intervals
Individual Marker
Marker Totals
Spines
Nodes
Synapse tree
Synapse details
Part of the neuron

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Morphometric data

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+ Synapse analyses are only available if you have the AutoSynapse module
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* end or node
** feret max, feret min, aspect ratio, compactness, convexity, form factor, roundness, solidity
*** process is axon, dendrite, and/or apical dendrite
**** end, center, or beginning
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Nl explorer branched structure analyses final

  • 1. wh ol e eac neur on hs po egme i nt nt t tre o poi eb nt y ord orde er r ( tre all tr ees e ) use r -d tre efine dc eb l yt erm osed bin co n sa ina l som ong p l type tour roc * ap som erim esses ete (b e aa r low som rea ) av ol u som me as pro hape ** ces pro s len gth ces *** pro s sur fa c ces ea r pro s vol um ea ces s to e pro ces rtuo sity nu s dia mb me t e dis r of n er t an od ce es nu mb to no d e spi r of s e ne pin de nsi es spi ty ne l nu ength mb an e typ r of e d dia me eo nd ter ord f end ings i ng er of en e din ndin gc g o dis tan ordin ce ate en din to en din gn nu g e mb ighb or er co o of ter s mi nal egme rdina tes ang n t les ype* ts po i nt c po oord i nt ina t t nu ype* es mb *** e loc r of m ati ar o de n, dis kers nsi ta ty o f n ce o dia fm me ma r ark k ers syn ter of ers ap ma se rke d syn ap ensit r s y+ syn e dia me ap s t syn e dis er + tan ap s ce syn e dis t tan o bra ap se ce n ch dia a + me long ter bra nch + + A Guide to Branched Structure Analyses in Neurolucida Categories of Branched Structure Analyses in Neurolucida Neuron Summary Segment Segment Points Each Tree Tree Totals Individual Tree Terminal Distance Layer Length Nearest Termination Terminals Tree Intervals Individual Marker Marker Totals Spines Nodes Synapse tree Synapse details Part of the neuron ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● Morphometric data ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● + Synapse analyses are only available if you have the AutoSynapse module ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● * end or node ** feret max, feret min, aspect ratio, compactness, convexity, form factor, roundness, solidity *** process is axon, dendrite, and/or apical dendrite **** end, center, or beginning ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● ●