1) The expression of clock genes in the avian premammillary nucleus (PMM) was examined under short and long photoperiods to understand photoperiodic time measurement and its effects on seasonal reproduction. 2) Under long photoperiods, the Per3 gene was phase-delayed by 16 hours compared to short photoperiods. Cry1 and Per3 genes were also induced by light pulses at Zeitgeber time 14, the photosensitive phase. 3) In contrast, clock genes in the pineal gland and suprachiasmatic nucleus showed different patterns of expression depending on photoperiod and light pulses, suggesting they may not be directly associated with photosensitivity and reproduction