鄧亮生, CUHK
“AIS is a genetic disease, complex trait”
- How much we know after 2007
Nelson Tang, MD
The Chinese University of Hong Kong
鄧亮生, CUHK
AIS as a Complex-traits Disease since 2007
• Back in 2007, AIS was called a complex trait
for the first time.
• My team published this review about the
possible etiology and pathogenesis of
idiopathic scoliosis (AIS)
• Two statements were made then (CORR,2017).
• 1. AIS is a genetic disease (complex trait)
• 2. Research of AIS needs to separately
investigate the initiation and progression
phases. These 2 phases are influenced by
different factors
鄧亮生, CUHK
AIS as a Complex-trait genetic disease
• Systemic disease: not only spine affected
• Both Single gene & Polygenic inheritance
• Different mechanisms / genes for
INITIATION & PROGRESSION
1. AIS is a genetic disease (complex trait)
鄧亮生, CUHK
Onset of AIS
Curve Progression & Severity
Normal puberty
Environmental
factors
Disease modifier genes/
progression genes
Affects progression & severity of
curve
e.g. ESR, COL, IGF1 ….
Initiation Phase:
Progression
Predisposition genes/
initiation genes
(More than ONE gene)
Family Linkage Studies
(Miller et al.)
Association Studies
(e.g. Melatonin receptor)
2. To separately investigate
the initiation and
progression phases
鄧亮生, CUHK
We have come a long way
2000 2005/06
1. Polygenetic disease: Population studies
2. Initiation vs progression genes
3. Axial Biotech
4. Candidate Gene studies
GWAS became
feasible
(WTCCC 2007)
2007
Dr. Cotrel’s
China Visit
2010
TDT
2011
Case control
GWAS found
LBX1
(Ikegawa)
Familial Study
Only
鄧亮生, CUHK
Old genetic diseases
Genetics
Environment
Disease
New genetic diseases (complex trait)
复杂性状
BRCA1
Mutation
4%
No
mutation
96%
Effect size
(penetrance)
鄧亮生, CUHK
Architecture of
Genetics in Complex trait
• 1. How many Genes ?
• 2. How big the effect ?
• 3. Any clinical Use ?
• The idea have been presented in
Cotrel’s meeting in Institut de
France, SRS, and other orthopedic
meetings etc
鄧亮生, CUHK
How much caused by Genetics ?
• Tang NL, Yeung HY, Hung VW, et al. Genetic epidemiology and heritability
of AIS: A study of 415 Chinese female patients. J Orthop Res.
2012;30(9):1464-1469. doi:10.1002/jor.22090
• Out of the total 531 sibs of AIS cases, 94 sibs had scoliosis (sibling
recurrence risk = 17.7%). The prevalence of AIS among male and female
sibs of an index case were 11.5% (95% CI = 7.5-15.5) and 23.0% (95% CI
= 18.1-27.9), respectively. Female sibs of an index case had an increased
risk of 8.9-fold (95% CI = 3.2-34.4) for developing AIS. These recurrent
risks were significantly higher than the risk in the control group (p <
0.0001). Overall, heritability was estimated to be 87.5 ± 11.1%.
鄧亮生, CUHK
Heritability
• Overall heritability: 98±5% (h2±S.E.)
• Female: 95±7%
• J Orth Research 2012
鄧亮生, CUHK
Medical Condition Heritability
Eye color 0.98
AIS 0.98
Hair curliness 0.95
Autism 0.9
Epilepsy 0.88
Type-1 diabetes 0.88
Celiac disease 0.87
Height 0.81
Schizophrenia 0.81
Alzheimer's disease 0.79
Polycystic ovary
syndrome
0.72
Bipolar disorder 0.7
Menarche, age at 0.7
鄧亮生, CUHK
Initiation of AIS is a genetic
disease (complex trait)
• Hypothesis:
– Initiation of AIS is a genetic disease (complex
trait)
• Prediction:
– Genome wide association study will disclose
the genetic predisposition for initiation of
curve (initiation phase)
• Action:
– Time to do GWAS
鄧亮生, CUHK
鄧亮生, CUHK
S-2000
Scoliosis 2000 proposal
鄧亮生, CUHK
Genotyping Platforms
• 2 common platforms
• Affymetrix: ver 6, >1M SNPs
• Illumina: chips with various
density
李嘉誠健康科學研究所
鄧亮生, CUHK
GWAS worked and found LBX1
• So far, LBX1 is the only AIS predisposition
gene that can be replicated (confirmed) by
other research groups.
• That is It is REAL.
Joint Scoliosis Research
Centre CUHK NU
鄧亮生, CUHK
Joint Scoliosis Research
Centre CUHK NU
The idea that
AIS is a genetic
disease (complex trait)
is first proven
鄧亮生, CUHK
However,
• Like other variants found by GWAS
• The risk effect is small (Odd ratio of < 2).
鄧亮生, CUHK
What we can learn from
GWAS study of Height ?
• Styrkarsdottir, U., Stefansson, O. A., Gunnarsdottir, K., …..Nelson Tang…..et al. (2019). GWAS of bone size yields
twelve loci that also affect height, BMD, osteoarthritis or fractures. Nature Communications, 10(1), 2054.
https://doi.org/10.1038/s41467-019-09860-0
• Also reviewed by Chatterjee et al 2013.
Joint Scoliosis Research
Centre CUHK NU
鄧亮生, CUHK
Joint Scoliosis Research
Centre CUHK NU
鄧亮生, CUHK
Low hanging
fruit is found
first among
others
鄧亮生, CUHK
Missing Heritability
• Heritability : >90% (sib risk: ~10x)
• LBX1, odd ratio = 1.8x, MAF=0.5
• Attributable risk due to LBX1: 15%
鄧亮生, CUHK
How Many Genes ?
• Many More involved
• Need large sample size to find
http://www.nature.com/nature/journal/v467/n7317/fig_tab/nature09410_F1.html
鄧亮生, CUHK
The first Chinese AIS GWAS 2015
• Zhu Z, Tang NL, Xu L, et al. Genome-wide association study identifies
new susceptibility loci for adolescent idiopathic scoliosis in Chinese
girls. Nat Commun. 2015;6:8355. doi:10.1038/ncomms9355
• Overall, we identify three new susceptibility loci at 1p36.32 near AJAP1 (rs241215,
Pcombined=2.95 × 10(-9)), 2q36.1 between PAX3 and EPHA4 (rs13398147,
Pcombined=7.59 × 10(-13)) and 18q21.33 near BCL-2 (rs4940576, Pcombined=2.22 ×
10(-12)). In addition, we refine a previously reported region associated with AIS at
10q24.32 (rs678741, Pcombined=9.68 × 10(-37)), which suggests LBX1AS1, encoding
an antisense transcript of LBX1, might be a functional variant of AIS. This is the first
GWAS investigating genetic variants associated with AIS in Chinese population, and the
findings provide new insight into the multiple aetiological mechanisms of AIS.
鄧亮生, CUHK
How Big the effect ?
• Each SNPs has small O.R.
• OR 1.3 to 1.5
• Little immediate clinical utility
鄧亮生, CUHK
Is it useful in clinic ?
• Not directly
• Clinical
parameters
would perform
better
鄧亮生, CUHK
Scolioscore ?
• 53 SNPs to predict progression
• You may remember my comment from
Day 1 that disease progression could not
be predicted by genetic markers (for the
great majority of AIS patients)
鄧亮生, CUHK
Joint Scoliosis Research
Centre CUHK NU
Severity of curve, Cobb angle:
UNLIKELY to be under large genetic influence
e.g. TWINs with very different severity
So, CLINICAL and ENVIRONMENTAL factors will be better predictor
鄧亮生, CUHK
Joint Scoliosis Research
Centre CUHK NU

Idiopathic Scoliosis is a genetic disease (complex trait)

  • 1.
    鄧亮生, CUHK “AIS isa genetic disease, complex trait” - How much we know after 2007 Nelson Tang, MD The Chinese University of Hong Kong
  • 2.
    鄧亮生, CUHK AIS asa Complex-traits Disease since 2007 • Back in 2007, AIS was called a complex trait for the first time. • My team published this review about the possible etiology and pathogenesis of idiopathic scoliosis (AIS) • Two statements were made then (CORR,2017). • 1. AIS is a genetic disease (complex trait) • 2. Research of AIS needs to separately investigate the initiation and progression phases. These 2 phases are influenced by different factors
  • 3.
    鄧亮生, CUHK AIS asa Complex-trait genetic disease • Systemic disease: not only spine affected • Both Single gene & Polygenic inheritance • Different mechanisms / genes for INITIATION & PROGRESSION 1. AIS is a genetic disease (complex trait)
  • 4.
    鄧亮生, CUHK Onset ofAIS Curve Progression & Severity Normal puberty Environmental factors Disease modifier genes/ progression genes Affects progression & severity of curve e.g. ESR, COL, IGF1 …. Initiation Phase: Progression Predisposition genes/ initiation genes (More than ONE gene) Family Linkage Studies (Miller et al.) Association Studies (e.g. Melatonin receptor) 2. To separately investigate the initiation and progression phases
  • 5.
    鄧亮生, CUHK We havecome a long way 2000 2005/06 1. Polygenetic disease: Population studies 2. Initiation vs progression genes 3. Axial Biotech 4. Candidate Gene studies GWAS became feasible (WTCCC 2007) 2007 Dr. Cotrel’s China Visit 2010 TDT 2011 Case control GWAS found LBX1 (Ikegawa) Familial Study Only
  • 6.
    鄧亮生, CUHK Old geneticdiseases Genetics Environment Disease New genetic diseases (complex trait) 复杂性状 BRCA1 Mutation 4% No mutation 96% Effect size (penetrance)
  • 7.
    鄧亮生, CUHK Architecture of Geneticsin Complex trait • 1. How many Genes ? • 2. How big the effect ? • 3. Any clinical Use ? • The idea have been presented in Cotrel’s meeting in Institut de France, SRS, and other orthopedic meetings etc
  • 8.
    鄧亮生, CUHK How muchcaused by Genetics ? • Tang NL, Yeung HY, Hung VW, et al. Genetic epidemiology and heritability of AIS: A study of 415 Chinese female patients. J Orthop Res. 2012;30(9):1464-1469. doi:10.1002/jor.22090 • Out of the total 531 sibs of AIS cases, 94 sibs had scoliosis (sibling recurrence risk = 17.7%). The prevalence of AIS among male and female sibs of an index case were 11.5% (95% CI = 7.5-15.5) and 23.0% (95% CI = 18.1-27.9), respectively. Female sibs of an index case had an increased risk of 8.9-fold (95% CI = 3.2-34.4) for developing AIS. These recurrent risks were significantly higher than the risk in the control group (p < 0.0001). Overall, heritability was estimated to be 87.5 ± 11.1%.
  • 9.
    鄧亮生, CUHK Heritability • Overallheritability: 98±5% (h2±S.E.) • Female: 95±7% • J Orth Research 2012
  • 10.
    鄧亮生, CUHK Medical ConditionHeritability Eye color 0.98 AIS 0.98 Hair curliness 0.95 Autism 0.9 Epilepsy 0.88 Type-1 diabetes 0.88 Celiac disease 0.87 Height 0.81 Schizophrenia 0.81 Alzheimer's disease 0.79 Polycystic ovary syndrome 0.72 Bipolar disorder 0.7 Menarche, age at 0.7
  • 11.
    鄧亮生, CUHK Initiation ofAIS is a genetic disease (complex trait) • Hypothesis: – Initiation of AIS is a genetic disease (complex trait) • Prediction: – Genome wide association study will disclose the genetic predisposition for initiation of curve (initiation phase) • Action: – Time to do GWAS
  • 13.
  • 14.
  • 15.
    鄧亮生, CUHK Genotyping Platforms •2 common platforms • Affymetrix: ver 6, >1M SNPs • Illumina: chips with various density 李嘉誠健康科學研究所
  • 16.
    鄧亮生, CUHK GWAS workedand found LBX1 • So far, LBX1 is the only AIS predisposition gene that can be replicated (confirmed) by other research groups. • That is It is REAL. Joint Scoliosis Research Centre CUHK NU
  • 17.
    鄧亮生, CUHK Joint ScoliosisResearch Centre CUHK NU The idea that AIS is a genetic disease (complex trait) is first proven
  • 18.
    鄧亮生, CUHK However, • Likeother variants found by GWAS • The risk effect is small (Odd ratio of < 2).
  • 19.
    鄧亮生, CUHK What wecan learn from GWAS study of Height ? • Styrkarsdottir, U., Stefansson, O. A., Gunnarsdottir, K., …..Nelson Tang…..et al. (2019). GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures. Nature Communications, 10(1), 2054. https://doi.org/10.1038/s41467-019-09860-0 • Also reviewed by Chatterjee et al 2013. Joint Scoliosis Research Centre CUHK NU
  • 20.
    鄧亮生, CUHK Joint ScoliosisResearch Centre CUHK NU
  • 21.
    鄧亮生, CUHK Low hanging fruitis found first among others
  • 22.
    鄧亮生, CUHK Missing Heritability •Heritability : >90% (sib risk: ~10x) • LBX1, odd ratio = 1.8x, MAF=0.5 • Attributable risk due to LBX1: 15%
  • 23.
    鄧亮生, CUHK How ManyGenes ? • Many More involved • Need large sample size to find http://www.nature.com/nature/journal/v467/n7317/fig_tab/nature09410_F1.html
  • 24.
    鄧亮生, CUHK The firstChinese AIS GWAS 2015 • Zhu Z, Tang NL, Xu L, et al. Genome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls. Nat Commun. 2015;6:8355. doi:10.1038/ncomms9355 • Overall, we identify three new susceptibility loci at 1p36.32 near AJAP1 (rs241215, Pcombined=2.95 × 10(-9)), 2q36.1 between PAX3 and EPHA4 (rs13398147, Pcombined=7.59 × 10(-13)) and 18q21.33 near BCL-2 (rs4940576, Pcombined=2.22 × 10(-12)). In addition, we refine a previously reported region associated with AIS at 10q24.32 (rs678741, Pcombined=9.68 × 10(-37)), which suggests LBX1AS1, encoding an antisense transcript of LBX1, might be a functional variant of AIS. This is the first GWAS investigating genetic variants associated with AIS in Chinese population, and the findings provide new insight into the multiple aetiological mechanisms of AIS.
  • 25.
    鄧亮生, CUHK How Bigthe effect ? • Each SNPs has small O.R. • OR 1.3 to 1.5 • Little immediate clinical utility
  • 26.
    鄧亮生, CUHK Is ituseful in clinic ? • Not directly • Clinical parameters would perform better
  • 27.
    鄧亮生, CUHK Scolioscore ? •53 SNPs to predict progression • You may remember my comment from Day 1 that disease progression could not be predicted by genetic markers (for the great majority of AIS patients)
  • 28.
    鄧亮生, CUHK Joint ScoliosisResearch Centre CUHK NU Severity of curve, Cobb angle: UNLIKELY to be under large genetic influence e.g. TWINs with very different severity So, CLINICAL and ENVIRONMENTAL factors will be better predictor
  • 29.
    鄧亮生, CUHK Joint ScoliosisResearch Centre CUHK NU