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GLOBAL
BIODIVERSITY   INFORMATION
               FACILITY

               An Inspirational Large
                 Scale International
                 Collaboration
                     David Remsen
                     Senior Programme Officer
                     September 2010

                       WWW.GBIF.ORG
Outline
                      • Basis of the GBIF Collaboration
                          • Focus
                          • Scope
                      • Organisation of the Collaboration
                          • Social
                          • Technical
                      • Impacts & Influences on the Collaboration
                          • Social
                          • Technical
                      • Impacts & Influences of the Collaboration
                          • Social
                          • Technical

Photo by Greg Basco
The Basis of the Collaboration




    Biodiversity

Photo by David Remsen
The focus of the Collaboration

    Free and open access




    To biodiversity data
Photo by Greg Basco
Biodiversity Information




            Information or data linked to a scientific name
Biodiversity data
                                                              Spanning Centuries
                                                              International Barcode of Life, 2010




 From T.E. Glover, The Fishes of Southwestern Japan, c.1870




       Spanning Continents
Biodiversity Informatics
Primary Biodiversity Data




                    Billions and billions of specimens
Primary Biodiversity Data




 • Spans Centuries
 • Vouchered                                              1874



                     Billions and billions of specimens
Primary Biodiversity Data




    Important focus of biodiversity informatics
Basis of the Collaboration




             History


Photo by Greg Basco
Photo by Christian Lange
History




• 33 (mostly) developed countries
• Megascience Forum est. 1992
  – Address the gap between scientists’
    perceived future requirements and those
    of their political authorities
History




• 1996 Working Group on Biological Informatics
  – Biodiversity information is vast and complex
  – Existing information is neither accessible nor fully
    useful
  – Recent technological and political developments
    presented OECD with leadership opportunity
History




• Establish a Global Biodiversity Information
  Facility (GBIF)
  – 2001 – GBIF Secretariat in Copenhagen
  – 2002 initiated a work programme
Organisation of the Collaboration




                       Social
 Photo by Greg Basco
GBIF Organisation
GBIF Organisation
GBIF Governing Board
GBIF Organisation
GBIF Funding
• If you fund you get a vote on the Gov. Board
• World Bank publishes GDP (in billions USD)
• Multiplied by

     Year     2007     2008     2009     2010     2011
     Factor   121.00   139.15   153.48   166.22   177.36



• USA 2009 = 14,256 * 153.48 = ~2M
• then various allowed adjustments
GBIF Participant Countries
GBIF Organisation




                   54 Countries (32 Voting/22 Assoc)
                   45 International Organisations
                   100s institutions
                   8000+ databases
Organisation of the Collaboration

            Technical




Photo by Greg Basco
Collaboration: Standards-enabled




            Dublin Darwin Core
Australia: National-level organisation

  Australian Virtual Herbarium
  Atlas of Living Australia
USA: Network of networks

  • MANIS
  • VertNet
  • NBII
  • ORNIS
  • eBIRD
  • NatureServe




                  Personal Trust
GBIF Network: Global Discovery




            Personal Trust
GBIF Network: Global Discovery




            Personal Trust
Global Discovery: data portal
216 million biodiversity data records
Using biodiversity data: Interoperability
Using biodiversity data
Using biodiversity data




              Reveal & verify migration trends/patterns
              Trans-boundary issues
Using biodiversity data




   • Crop wild relatives
   • Changes in species richness under
   climate change scenarios
Impacts on the Collaboration

                      Social Impacts




       Trust

Photo by Greg Basco
                      Coordination
Personal Trust: Data in

    Facetime is critical
    Recognition - citation/attribution
    Personally-Enabled
Personal Trust: Data Out




                           • Documentation
                           • Annotation
                           • Standards
              Social       • Technically-enabled
 Photo by David Remsen
National Trust
                 A History of Exploitation

                      North/South divide
Data Repatriation
Coordination


           Design by Committee
• The defining characteristics of "design by
  committee" are needless complexity,
  internal inconsistency, logical flaws,
  banality, and the lack of a unifying vision.

     TO BE AVOIDED (BUT HARDER THAN IT SEEMS)
Collaborative Requirements Capture




          Core Implementation
Impacts & Influences on the Collaboration

                              Technical Impacts




                             Some lessons learned
  Photo by Christian Lange
Impacts on the Collaboration
                      Don’t build your network on a house of cards




Photo by Greg Basco
Impacts on the Collaboration
                        Put the burden on the
                                infrastructure




                      Not the users
Photo by Greg Basco
Gauging measures of success
                   The best network
            is the one you don’t see



Data record numbers – tip of the iceberg
Impacts of the Collaboration




Photo by Greg Basco   Social Impacts
Mainstreaming Data Sharing




Mediation
Enabling regionalisation




Decentralised use of the infrastructure
Impacts of the Collaboration




     Technical Impacts

 The consequences of Scale
Consequences of Scale

Social sharing is progressive




                But may impact Trust
Consequences of Scale

               Data sharing is conservative
                           even regressive
• Federated Search
• Databases to indexes
• XML to CSV
• Complex Protocols to good old HTTP
• LifeWatch & staying grounded
The Global Biodiversity Information System

           Thank you




                 David Remsen
               dremsen@gbif.org

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Collaboration Forum Keynote

Editor's Notes

  1. A component of a comprehensive strategy for addressing names as components of biodiversity information. Names in the wild frontiers.
  2. From the past
  3. And it’s delivered by an assortment of interests in biology and information management that have consolidated into something called Biodiversity Informatics – a relatively new domain of biological informatics that fills a gaping hole between traditional bioinformatics with its focus on genomes and Ecoinformatics that looks at entire landscapes and their interaction with the physical world.
  4. SCOPE of biodiversity data.
  5. SCOPE of biodiversity data.
  6. And Im going to tell you about just a tiny piece of this
  7. Update these to current
  8. Picture of a regional meeting or people here.
  9. National Level vs Personal
  10. Don’t want their problems/ challenges solved for them. Lessons from Entebbe. Development of regional centers and independence from the central GBIFS.
  11. Don’t want their problems/ challenges solved for them. Lessons from Entebbe. Development of regional centers and independence from the central GBIFS.
  12. Don’t want their problems/ challenges solved for them. Lessons from Entebbe. Development of regional centers and independence from the central GBIFS.