Bio2RDF-ISMB2008

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This document outlines how to use Bio2RDF with a Virtuoso server. It introduces the data integration problem in bioinformatics and describes what Bio2RDF Atlas is. It then provides an overview of semantic web technologies before explaining Bio2RDF's approach. The document then details how to install Virtuoso, load N3 databases into the graph, and query the graph with SPARQL and text search.

Technology Education

How to use Bio2RDF
with a Virtuoso server.
ISMB2008 Technology track

François Belleau, Marc-Alexande Nolin,
Philippe Rigault
Centre de Recherche du CHUL, Université Laval
●

Département d'informatique et de génie logiciel, Université Laval
●

Climate Change is an extraordinary challenge for the development of our socioeconomic environment. The compilation of comprehensive knowledge about our physical environment is a key importance for implementing of mitigation strategies. Long- term terrestrial observatories are supporting the systematic monitoring of environmental parameters. They are responsible for data collection, data analysis and subsequently for decision support. Not only the complex structure and the large volume of data streams but also the necessary integration of existing monitoring infrastructures for such observatories imply special technological challenges for today’s scientific data and information management. Recent developments of Information and Communication Technology provide important conceptual and technological input for the proper design and implementation of underlying monitoring and data infrastructures. To avoid constantly recurring system developments for such infrastructures, a general and integrated approach for a reference architecture concept is needed.

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