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Discovering Disease Genes-  The Example of Schizophrenia   Pippa Thomson,  Medical Genetics Section, Dept of Medical Sciences, MMC, University of Edinburgh.
Importance of the illness ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Schizophrenia Positive symptoms: visual & auditory hallucinations, delusions, incoherent speech
Schizophrenia   Negative symptoms: withdrawal & isolation, impaired attention & blunted emotions
Altered brain structure & function
High Heels Cause Schizophrenia  and 6 Other Outlandish Medical Theories  2. High-heeled shoes cause schizophrenia.  You have to wonder where some medical theories originate. Why did Swedish scientist Jarl Flensmark decide to study  a connection between heeled shoes and the incidence of schizophrenia ? The world may never know. But his initial research seems sound, and he has connected certain brain activity with stimulation of certain points on the feet. The spread of schizophrenia around the globe has closely followed the spread of availability of heeled shoes. Is it an eerie coincidence or a real cause for concern? Look out, men - this theory applies not only to stilettos, but to any shoe with a heel. remedicated.com
Relative risk of developing Schizophrenia Environment !
Benefits of gene identification ,[object Object],[object Object],[object Object],[object Object],[object Object],Kraepelin, 1896  “ As we do not know what causes the illness there cannot be a rational treatment”
Allelic architecture and mapping strategy Magnitude of effect Frequency in population Family-based  linkage studies Association studies in populations Unlikely to exist Fnct. Studies
Locus Identification-problems ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Locus identification- reducing the problems ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Linkage Analysis
A balanced t(1;11)(q42;q14) translocation der1 der11 11 1 1 1q42 11q14 11
? recurrent major depression minor diagnosis unaffected schizophrenia bipolar affective disorder (1;11)(q42;q14) translocation translocation increases risk by 50-fold t(1;11) co-segregates with major mental illness
[object Object],[object Object],[object Object],[object Object],Controls Schizophrenics 100’s  Individuals =  1%  Schizophrenia 100’s  Individuals =  100%  Schizophrenia
Case-control association studies ,[object Object],[object Object],[object Object],[object Object],p Mb T A G C
SNPs are genotyped in parent-offspring trios, initially in CEPH trios. This can be used to identify SNPs that co-segregate (i.e. are in linkage disequilibrium) versus those that segregate independently. A subset of SNPs can therefore be chosen that best represent the genetic diversity in a region/gene, reducing the costs of genotyping. Summary of genotyped SNPs:  Populations   CEU  CHB+JPT YRI Total Non-Redundant   3,204,709   3,244,897  3,150,433  International HapMap project http://www.hapmap.org/
Region of interest HapMap genotyped SNPs Known SNPs* Known genes in the regions Linkage Disequilibrium (LD) *http://www.ncbi.nlm.nih.gov/SNP/
Tagging SNP selection  Proportion of haplotype diversity explained : SNPs 1-23 - 97%   SNPs 24-46 - 98%
DISC2 TRANSLOCATION LOD=7.1, SCOTLAND Genetic evidence implicating  DISC1  in psychiatric illness 1 SCZ  &   BPAD  &   MDD SCOTLAND SCZ ,  BPAD HAPLOTYPE p =0.0044,  p =0.0016 2 3 4 5 6 7 8 9 10 11 12 13 DISC1 LOD=2, BRITAIN & ICELAND  (Curtis et al 2003) D1S251 LOD=1, TAIWAN  (Hwu et al 2003) SCZ BPAD HAPLOTYPE p =0.00024, FINLAND  (Hennah et al 2003) SCZ  &   SCZAFF LOD=3.21, FINLAND  (Ekelund et al 2001) SCZ D1S2709 p =0.000027, North-America  (Hodgkinson et al 2004) rs6675281 SCZAFF
Table 1. Summary of current evidence supporting several of the more promising genes implicated in schizophrenia, bipolar disorder, and mixed bipolar-psychosis phenotypes Craddock et al., SCZ Bulletin, 2006 Genes for Schizophrenia ? >130 genes implicated
DISC1 interactome protein-protein interactions Chris Carter, http://www.polygenicpathways.co.uk/disc11_vml.htm
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Effects of altered DISC1 on gene expression Clapcote et al., Neuron. 2007 May 3; 54 ( 3 ): 387-402 .
Schizophrenia Depression Effects of Altered DISC1 on Behaviour ( How do you know if a mouse is schizophrenic? )
Effects of altered DISC1 on gene expression ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Detect disrupted pathways
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Whole genome sequencing
Psychiatric Genetics- Unanswered Questions ,[object Object]
DISC1 Kirsty Millar Shaun Mackie Fumiaki Ogawa Jennifer Chubb Becky Carlyle Nick Bradshaw Sheila Christie Steve Clapcote Kathy Evans Sarah Brown William Hennah Medical Genetics Prof David Porteous Prof Douglas Blackwood Walter Muir Ben Pickard Other collaborators DISC1 Consortium Wellcome Trust CRF Illumina, San Diego Cold Spring Harbor laboratories Acknowledgements

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Schizophrenia

  • 1. Discovering Disease Genes- The Example of Schizophrenia Pippa Thomson, Medical Genetics Section, Dept of Medical Sciences, MMC, University of Edinburgh.
  • 2.
  • 3. Schizophrenia Positive symptoms: visual & auditory hallucinations, delusions, incoherent speech
  • 4. Schizophrenia Negative symptoms: withdrawal & isolation, impaired attention & blunted emotions
  • 6. High Heels Cause Schizophrenia and 6 Other Outlandish Medical Theories 2. High-heeled shoes cause schizophrenia. You have to wonder where some medical theories originate. Why did Swedish scientist Jarl Flensmark decide to study a connection between heeled shoes and the incidence of schizophrenia ? The world may never know. But his initial research seems sound, and he has connected certain brain activity with stimulation of certain points on the feet. The spread of schizophrenia around the globe has closely followed the spread of availability of heeled shoes. Is it an eerie coincidence or a real cause for concern? Look out, men - this theory applies not only to stilettos, but to any shoe with a heel. remedicated.com
  • 7. Relative risk of developing Schizophrenia Environment !
  • 8.
  • 9. Allelic architecture and mapping strategy Magnitude of effect Frequency in population Family-based linkage studies Association studies in populations Unlikely to exist Fnct. Studies
  • 10.
  • 11.
  • 12.
  • 13. A balanced t(1;11)(q42;q14) translocation der1 der11 11 1 1 1q42 11q14 11
  • 14. ? recurrent major depression minor diagnosis unaffected schizophrenia bipolar affective disorder (1;11)(q42;q14) translocation translocation increases risk by 50-fold t(1;11) co-segregates with major mental illness
  • 15.
  • 16.
  • 17. SNPs are genotyped in parent-offspring trios, initially in CEPH trios. This can be used to identify SNPs that co-segregate (i.e. are in linkage disequilibrium) versus those that segregate independently. A subset of SNPs can therefore be chosen that best represent the genetic diversity in a region/gene, reducing the costs of genotyping. Summary of genotyped SNPs: Populations CEU CHB+JPT YRI Total Non-Redundant 3,204,709 3,244,897 3,150,433 International HapMap project http://www.hapmap.org/
  • 18. Region of interest HapMap genotyped SNPs Known SNPs* Known genes in the regions Linkage Disequilibrium (LD) *http://www.ncbi.nlm.nih.gov/SNP/
  • 19. Tagging SNP selection Proportion of haplotype diversity explained : SNPs 1-23 - 97% SNPs 24-46 - 98%
  • 20. DISC2 TRANSLOCATION LOD=7.1, SCOTLAND Genetic evidence implicating DISC1 in psychiatric illness 1 SCZ & BPAD & MDD SCOTLAND SCZ , BPAD HAPLOTYPE p =0.0044, p =0.0016 2 3 4 5 6 7 8 9 10 11 12 13 DISC1 LOD=2, BRITAIN & ICELAND (Curtis et al 2003) D1S251 LOD=1, TAIWAN (Hwu et al 2003) SCZ BPAD HAPLOTYPE p =0.00024, FINLAND (Hennah et al 2003) SCZ & SCZAFF LOD=3.21, FINLAND (Ekelund et al 2001) SCZ D1S2709 p =0.000027, North-America (Hodgkinson et al 2004) rs6675281 SCZAFF
  • 21. Table 1. Summary of current evidence supporting several of the more promising genes implicated in schizophrenia, bipolar disorder, and mixed bipolar-psychosis phenotypes Craddock et al., SCZ Bulletin, 2006 Genes for Schizophrenia ? >130 genes implicated
  • 22. DISC1 interactome protein-protein interactions Chris Carter, http://www.polygenicpathways.co.uk/disc11_vml.htm
  • 23.
  • 24. Schizophrenia Depression Effects of Altered DISC1 on Behaviour ( How do you know if a mouse is schizophrenic? )
  • 25.
  • 26.
  • 27.
  • 28. DISC1 Kirsty Millar Shaun Mackie Fumiaki Ogawa Jennifer Chubb Becky Carlyle Nick Bradshaw Sheila Christie Steve Clapcote Kathy Evans Sarah Brown William Hennah Medical Genetics Prof David Porteous Prof Douglas Blackwood Walter Muir Ben Pickard Other collaborators DISC1 Consortium Wellcome Trust CRF Illumina, San Diego Cold Spring Harbor laboratories Acknowledgements