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Medical Informatics Journal Club
12 January 1998
Frank W. Meissner, M.D., F.A.C.P., F.A.C.C., F.C.C.P.
Prediction of outcome in critically ill
patients using artificial neural network
synthesised by genetic algorithm.
Dybowski R, Weller P, Chang R, Grant V
Lancet; 347, 1146-1150, April 27 1996
Patient Population
●Guy’s Hospital London
●Data from 4484 Patients
●14502 daily records
○Avg hospital d’s = 3.82
●‘Randomized’ selection of 1Day record
●Sepsis Syndrome Definition
○MBP < 70 mmHg
○Mean Temp > 38 degrees Centigrade
○Mean WBC < 4K or >12K
●Case definition = 50% mortality rate
Patient Population
Methodology
●463 records =Case definition
●258 randomly selected by random
number generator
●Training set = 168 records
○Mortality rate = 46%
●Test set = 90 records
○Mortality rate = 49%
Source of Patient Admit
ALL Meeting
Entry Criteria
Patient Demographics
ALL Meeting
Entry Criteria
Patient Physiology
ALL Meeting
Entry Criteria
Type of Organ Failure/Apache III Score
ALL Meeting
Entry Criteria
Neural Network Construction
●CART
○157 Variables => 11 variables
●Logistic Regression Analysis
○157 variables => 9 variables
●Neural Net inputs
○CART + Logistic Regression Variables
○18 variables (2 variables in both sets)
Neural Network Construction
CART/Logisitic Regression Variables
Neural Net ‘Quasi-Darwinian’ Evolution
●20 randomly generated neural networks
●Structure of neural net
○One ‘chromosome’ with 3 ‘gene’ loci
○Loci = 5-bit binary number = # nodes in
intermediate layer of neural net
●Probability of gene passage = function of
performance
●Cross-over position = random event
1 2 3 4
5
Conceptual Diagram of Genetic Algorithm
Encoding Structure of Hidden Layer- Neural Net
Chromosome
01000 00110 00011
=8 nodes =6 nodes =3 nodes
Inputs
Output
Hidden Layer
7th Generation Neural Network
POST ARREST?
NONCARDIAC PULMONARY EDEMA?
CHRONIC CARDIOVASCULAR DZ?
CARDIOTHORACIC SURGERY?
# D’S WITH ARF
URINE OUTPUT
BUN
ARTERIAL pH
ADMIT DUE TO ACID/BASE DISTURBANCE?
PaCO2
AGE
RACE
PLANNED POSTOP MONITORING IN ICU?
ELECTIVE OPERATION?
GI INDICATOR FOR ADMIT?
NEURO INDICATOR FOR ADMIT?
# D’S AN ORGAN FAILURE OCCURRED
RESP FAILURE DURING DAY IN ICU?
ONE MINUTE UNIVERSITY: Stats 690
Reciever Operating Curves
A means of graphically demonstrating the ability of a
test to indicate the presence of the disease for which
the test tests
Area under the ROC = probability of the test
correctly identifying the presence of disease
True
Positive
Rate
ROC Curves For Neural Nets vs Logistic Regression
Critique of Paper

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Medical Informatics Journal Club

  • 1. Medical Informatics Journal Club 12 January 1998 Frank W. Meissner, M.D., F.A.C.P., F.A.C.C., F.C.C.P. Prediction of outcome in critically ill patients using artificial neural network synthesised by genetic algorithm. Dybowski R, Weller P, Chang R, Grant V Lancet; 347, 1146-1150, April 27 1996
  • 2. Patient Population ●Guy’s Hospital London ●Data from 4484 Patients ●14502 daily records ○Avg hospital d’s = 3.82 ●‘Randomized’ selection of 1Day record
  • 3. ●Sepsis Syndrome Definition ○MBP < 70 mmHg ○Mean Temp > 38 degrees Centigrade ○Mean WBC < 4K or >12K ●Case definition = 50% mortality rate Patient Population
  • 4. Methodology ●463 records =Case definition ●258 randomly selected by random number generator ●Training set = 168 records ○Mortality rate = 46% ●Test set = 90 records ○Mortality rate = 49%
  • 5. Source of Patient Admit ALL Meeting Entry Criteria
  • 8. Type of Organ Failure/Apache III Score ALL Meeting Entry Criteria
  • 10. ●CART ○157 Variables => 11 variables ●Logistic Regression Analysis ○157 variables => 9 variables ●Neural Net inputs ○CART + Logistic Regression Variables ○18 variables (2 variables in both sets) Neural Network Construction
  • 12. Neural Net ‘Quasi-Darwinian’ Evolution ●20 randomly generated neural networks ●Structure of neural net ○One ‘chromosome’ with 3 ‘gene’ loci ○Loci = 5-bit binary number = # nodes in intermediate layer of neural net ●Probability of gene passage = function of performance ●Cross-over position = random event
  • 13. 1 2 3 4 5 Conceptual Diagram of Genetic Algorithm
  • 14. Encoding Structure of Hidden Layer- Neural Net Chromosome 01000 00110 00011 =8 nodes =6 nodes =3 nodes Inputs Output Hidden Layer
  • 15. 7th Generation Neural Network POST ARREST? NONCARDIAC PULMONARY EDEMA? CHRONIC CARDIOVASCULAR DZ? CARDIOTHORACIC SURGERY? # D’S WITH ARF URINE OUTPUT BUN ARTERIAL pH ADMIT DUE TO ACID/BASE DISTURBANCE? PaCO2 AGE RACE PLANNED POSTOP MONITORING IN ICU? ELECTIVE OPERATION? GI INDICATOR FOR ADMIT? NEURO INDICATOR FOR ADMIT? # D’S AN ORGAN FAILURE OCCURRED RESP FAILURE DURING DAY IN ICU?
  • 16. ONE MINUTE UNIVERSITY: Stats 690 Reciever Operating Curves A means of graphically demonstrating the ability of a test to indicate the presence of the disease for which the test tests Area under the ROC = probability of the test correctly identifying the presence of disease
  • 17. True Positive Rate ROC Curves For Neural Nets vs Logistic Regression