Comunicación presentada a la 7th International Conference of Open Repositories (OR). Edinburgh. 9-13 july. 2012 Pilar Toro, Teresa Matamoros y Verónica Juan

1. Andalusian Health Repository
Promoting the scientific
health output among
professionals and providing
citizens with quality health
information
Toro-Sánchez-Blanco, Pilar, Matamoros-Casas, Teresa,
Juan-Quilis, Verónica
Biblioteca Virtual del Sistema Sanitario Público de Andalucía. Consejería de
Salud de la Junta de Andalucía, Seville, Spain

2. Index
• Andalusian Public Health System
• Andalusian Health repository
• Special features
• Customization of DSpace
• Metadata Dublin Core Scheme
• Advanced Search
• Integration MeSH Thesaurus
• Submission Form
• Batch Ingest

3. Andalusian Public Health System
Andalusia:
- More than 8 million inhabitants
- 87,268 km2 (17.2% of Spain)
- 8 provinces
Health System:
- Health Regional Government and other
management centres
- 45 hospitals
- 1520 primary healthcare centres
- More than 20 research and teaching centres
- 102.500 professionals

4. Andalusian Health System Scientific Output
Medical care, research, health promotion and administrative activities
Monographs
Health System entities
Evaluated by:
Journals editorial committee or
Articles Scientific journals a peer review system
Materials for patients and citizens
Plans and health programs
Produced in electronic format
Guides and healthcare protocols
Research projects…

6. Andalusian Health Repository
Unique open and interoperable environment
to collect and manage all the scientific output
generated by the Health System professionals

7. Goals
• To collect and manage in one, open and interoperable, place research
outcomes, scientific output and quality health information for patients and
citizens.
• To guarantee the long-term preservation and access to all the
information generated by the health system professionals.
• To facilitate the knowledge transfer among the health system
professionals and turn scientific discoveries into clinical practice.
• To provide quality health information for patients and citizens.

8. Andalusian Health Repository
DSpace 1.6.2 (jspui):
- open source software- complies with the Andalusia
Government standards and policies
- large community of users and developers
- covers our main specifications

9. Andalusian Health Repository
Institutional Subject
Specific qualifiers:
Structure: Contents: Collections:
MeSH (Medical Subject
Type of centres Strict quality criteria kinds of
Headings) as subjects
and their activities prior to submitting documents
headings

10. Collections
Sub-communities: provinces
and centers

11. Customization of DSpace
Advanced Search MeSH Thesaurus Submission form

12. Advanced Search

13. advanced.jsp dspace.cfg
QueryArgs.java input_forms.xml

14. dspace.cfg

15. QueryArgs.java

16. MeSH Thesaurus

17. navbar_default.jsp
Input_forms.xml
mesh.xml

18. http://www.nlm.nih.gov/mesh/filelist.html

19. MeSH Subject Headings
Body Regions; A01
Anatomic Landmarks; A01.1 MeSH
Breast; A01.2
Mammary Glands, Human;A01.2.1 Anatomy Organisms
Nipples; A01.2.2
A B
Head; A01.3
Digestive System; A02 Digestive System
Body Regions
Biliary Tract; A02.1
A01 A02
Anatomic
Landmarks Breast Head Biliary Tract
A01.1 A01.2 A01.3 A02.1
Mammary Glands Nipples
A01.2.1 A01.2.2

20. DSpace Controlled Vocabulary
<node label =«Medical Subject Headings» id=«MeSH»>
<isComposedBy>
<node label=«Anatomy» id=«A»>
<isComposedBy>
<node label=«Body Regions» id=«A01»>
….
</isComposedBy>
</node> label
<node label=«Organisms» id = «B»>
id
…
</node>
….
</isComposedBy> isComposedBy
</node>

21. XML used
by DSpace

23. Anual Update: Batch Metadata Editing
[dspace]/bin/dspace metadata-export –f name_of_file.csv
Field MeSH of the document
Medical Subject Headings::Health Care::Environment and Public Health::Public
Health::Epidemiologic Measurements::Biometry::Anthropometry::Body Mass Index
||
Medical Subject Headings::Health Care::Environment and Public Health::Public
Health::Epidemiologic Measurements::Demography::Health Status::Health Status
Disparities
||
Medical Subject Headings::Health Care::Environment and Public Health::Public
Health::Epidemiologic Methods::Epidemiologic Study Characteristics as
Topic::Epidemiologic Studies::Cohort Studies::Prospective Studies||Medical
Subject Headings::Phenomena and Processes::Physiological Phenomena::Body
Constitution::Body Weights and Measures::Body Size::Waist Circumference

24. [dspace]/bin/dspace metadata-import –f name_of_file_csv

25. Submission Form

26. Collections
Marc21 Metadato Label Artículos Publicaciones Informes Guías y Presentaciones Material de
SSPA tcos protocolos a congresos divulgación
Artículo Libro internos Guía/ Conferencia
Metadata
Carta
Corrección
Parte de libro Informe Protocolo Presentación Campaña Folleto
Imagen
Type of documents
Revista Póster
Editorial Revisión de libro? Ponencia Vídeo
Meeting abstract
Revisión
100,110,111 dc.contributor.author Autor X X X X X X X
700,711
710 dc.contributor.authoraffiliation Afiliación X X X X X ¿
dc.contributor.group Grupo X X X X
245 dc.title Título X X X X X X X
dc.title.alternative Otros títulos
dc.date.issued Fecha de Publicación X X X X X X X
260 dc.publisher Editor X X X X X X
dc.identifier.citation Cita Bibliográfica X X X
440,490,800,8
8 dc.relation.ispartof Publicación X X X
10,811,830
760,733 Fields
dc.relation.ispartofseries Series X X X X
dc.relation.conferencename Congreso X
dc.relation.conferencedate Fecha del congreso X
dc.relation.conferenceplace Lugar del congreso X
019,020,080 dc.identifier Identificadores X X X X X X X
856 dc.relation.publisherversion Versión del editor X X X X X X X
Leader06 dc.type Tipo X X X X X X X
dc.language.iso Idioma X X X X X X X
650,651 dc.subject Palabras clave X X X X X X X
650 dc.subject.mesh Términos MeSH X X X X X X X
dc.subject.cip CIP/IPC
520 dc.description.abstract Abstract X X X X X X X
520 dc.description.otherabstracts Other Abstracts X X X X X X X
dc.description.sponsorship Patrocinadores X X X X X
500 dc.description Descripción X X X X X X X
505 dc.description.tableofcontents Contenido X X
dc.description.version Revisión por pares X X X X X
dc type version
dc.type.version Versión X X X X X*
506 dc.rights.accessRights Derechos X X X X X X X
300 dc.format.extent Nº Páginas** X X X X X X

27. Submission Form: dc_type, dc_type_subtype
input-forms.xml
item_submission.xml Messages.properties
Web
UI
doc.jsp edit-metadata.jsp review-doc.jsp
JSPDocStep.java
InProgressSubmission.java
WorkspaceItem.java
DocStep.java DCInputSet.jsp WorkflowItem.java

29. dc.type.subtype dc.type (DRIVER)
Artículo
Carta
Corrección
Editorial info:eu-repo/semantics/article
Meeting Abstract
Revisión
Revisión de libro
Libro
info:eu-repo/semantics/book
Parte de libro info:eu-repo/semantics/bookPart
Informe técnico
info:eu-repo/semantics/report
Guías y protocolos
Conferencia info:eu-repo/semantics/conferenceObject
Póster
Presentación
Campaña publicitaria
Folleto info:eu-repo/semantics/other
Imagen
Vídeo

31. item_submission.xml
doc.jsp JSPDocStep.java DocStep.java
User interface. Processes the form. Contains auxiliary
Shows the form in functions used by
the Web Browser JSPDocStep.java

32. JSPDocStep.java
Store changes in the database

33. Submission Form: dc_type, dc_type_subtype
input-forms.xml
item_submission.xml Messages.properties
Web
UI
doc.jsp
JSPDocStep.java
InProgressSubmission.java
WorkspaceItem.java
DocStep.java WorkflowItem.java

34. edit-metadata.jsp
Can’t be modified by
the user

35. DCInputSet.java
Fields not shown in the
form where the
document is described

36. Submission Form: dc_type, dc_type_subtype
input-forms.xml
item_submission.xml Messages.properties
Web
UI
doc.jsp edit-metadata.jsp
JSPDocStep.java
InProgressSubmission.java
WorkspaceItem.java
DocStep.java DCInputSet.jsp WorkflowItem.java

37. review-doc.jsp

38. Submission Form: dc_type, dc_type_subtype
input-forms.xml
item_submission.xml Messages.properties
Web
UI
doc.jsp edit-metadata.jsp review-doc.jsp
JSPDocStep.java
InProgressSubmission.java
WorkspaceItem.java
DocStep.java WorkflowItem.java

39. Batch Ingest

40. Articles Monographs
Bibliographic
dabatases
Impactia
Excel text file
script

41. Equivalences WoS and DC Qualified
Id WoS (Impactia) Dublin Core
Qualified
AU authors dc.contributor.author
C1 auth-affi dc.contributor.authoraffiliation
dc.contributor.group
TI title dc.title*
PY year dc.date.issued
PU publishers dc.publisher
SO abbreviated_source_title
VL volume
dc.identifier.citation
IS issue
BP page_start
EP page_end
dc.relation.publisherversion
SC Source-title dc.relation.ispartof
SN journal dc.identifier.issn
DI doi dc.identifier.doi
dc.identifier.pmid
dc.identifier.other (PMC)
dc.type (info:eu-
repo/semantics/Article)
http://images.webofknowledge.com/WOK45/help/WOK/hft_inspec.html

42. Marc21 Metadato Label
Equivalences Marc21 FEPU dc.date.issued Fecha de
Publicación
and DC Qualified LENG dc.language.iso Idioma
T019 dc.identifier.dl DL
T020 dc.identifier.isbn ISBN
T022 dc.identifier.issn ISSN
T080 dc.identifier.other Otro
T245 dc.title Título
T250 dc.citation Cita bibliográfica
T260 dc.publisher Editor
T300 dc.format.extent Nº Páginas
T500 dc.description Descripción
T501 dc.description Descripción
T505 dc.description.tableofc Contenido
ontents
T520 dc.description.other Resumen
abstracts
T525 dc.description Descripción
T650 dc.subject Palabras Clave
T651 dc.subject Palabras Clave
T700 dc.contributor.author Autor
T710 dc.publisher Editor
T711 dc.relation.conferencen
ame
T856 dc.relation.publisherversion Versión del editor

44. /usr/local/dspace/bin/import -a ptoro@bvsspa.es -c 10668/10 -s
/home/dspace/Escritorio/archive_directory -m mapfile -w
-a: Add Items to DSpace
-c: Destination Collection by their Handle or database ID
-s: source of the items (directory)
-w: Send the submission through collection’s workflow
Workflow:
• Complete metadata
• Assign MeSH terms
• Check contents
• Upload files

45. Conclusions

46. Health System
Health System:
professionals:
• Visibility of scientific
• Access to publisehd and
output and relationships
unpublished materials
between centres
• Less duplication of work
Andalusian
Health
Repository
Patients and citizens:
• Easier access to quality
health information

47. Thank you
pilar.toro@juntadeandalucia.es
teresa.matamoros@juntadeandalucia.es
veronica.juan@juntadeandalucia.es
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